public class ProteinprophetDetails extends Object
Java class for anonymous complex type.
The following schema fragment specifies the expected content contained within this class.
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="nsp_information">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="nsp_distribution" maxOccurs="unbounded">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<attribute name="bin_no" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
<attribute name="nsp_lower_bound_incl" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="nsp_upper_bound_excl" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="nsp_lower_bound_excl" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="nsp_upper_bound_incl" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="pos_freq" use="required" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="neg_freq" use="required" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="pos_to_neg_ratio" use="required" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="alt_pos_to_neg_ratio" type="{http://www.w3.org/2001/XMLSchema}double" />
</restriction>
</complexContent>
</complexType>
</element>
</sequence>
<attribute name="neighboring_bin_smoothing" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
</restriction>
</complexContent>
</complexType>
</element>
<element name="fpkm_information" maxOccurs="unbounded" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="fpkm_distribution" maxOccurs="unbounded">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<attribute name="bin_no" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
<attribute name="fpkm_lower_bound_incl" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="fpkm_upper_bound_excl" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="fpkm_lower_bound_excl" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="fpkm_upper_bound_incl" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="pos_freq" use="required" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="neg_freq" use="required" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="pos_to_neg_ratio" use="required" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="alt_pos_to_neg_ratio" type="{http://www.w3.org/2001/XMLSchema}double" />
</restriction>
</complexContent>
</complexType>
</element>
</sequence>
<attribute name="neighboring_bin_smoothing" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
</restriction>
</complexContent>
</complexType>
</element>
<element name="ni_information" maxOccurs="unbounded" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="ni_distribution" maxOccurs="unbounded">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<attribute name="bin_no" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
<attribute name="ni_lower_bound_incl" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="ni_upper_bound_excl" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="ni_lower_bound_excl" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="ni_upper_bound_incl" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="pos_freq" use="required" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="neg_freq" use="required" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="pos_to_neg_ratio" use="required" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="alt_pos_to_neg_ratio" type="{http://www.w3.org/2001/XMLSchema}double" />
</restriction>
</complexContent>
</complexType>
</element>
</sequence>
</restriction>
</complexContent>
</complexType>
</element>
<element name="protein_summary_data_filter" maxOccurs="unbounded">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<attribute name="min_probability" use="required" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="sensitivity" use="required" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="false_positive_error_rate" use="required" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="predicted_num_correct" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="predicted_num_incorrect" type="{http://www.w3.org/2001/XMLSchema}double" />
</restriction>
</complexContent>
</complexType>
</element>
</sequence>
<attribute name="occam_flag" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="groups_flag" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="degen_flag" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="nsp_flag" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="fpkm_flag" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="initial_peptide_wt_iters" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="nsp_distribution_iters" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="final_peptide_wt_iters" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="run_options" type="{http://www.w3.org/2001/XMLSchema}string" />
</restriction>
</complexContent>
</complexType>
| Modifier and Type | Field and Description |
|---|---|
protected String |
degenFlag |
protected String |
finalPeptideWtIters |
protected String |
fpkmFlag |
protected List<FpkmInformation> |
fpkmInformation |
protected String |
groupsFlag |
protected String |
initialPeptideWtIters |
protected List<NiInformation> |
niInformation |
protected String |
nspDistributionIters |
protected String |
nspFlag |
protected NspInformation |
nspInformation |
protected String |
occamFlag |
protected List<ProteinSummaryDataFilter> |
proteinSummaryDataFilter |
protected String |
runOptions |
| Constructor and Description |
|---|
ProteinprophetDetails() |
| Modifier and Type | Method and Description |
|---|---|
String |
getDegenFlag()
Gets the value of the degenFlag property.
|
String |
getFinalPeptideWtIters()
Gets the value of the finalPeptideWtIters property.
|
String |
getFpkmFlag()
Gets the value of the fpkmFlag property.
|
List<FpkmInformation> |
getFpkmInformation()
Gets the value of the fpkmInformation property.
|
String |
getGroupsFlag()
Gets the value of the groupsFlag property.
|
String |
getInitialPeptideWtIters()
Gets the value of the initialPeptideWtIters property.
|
List<NiInformation> |
getNiInformation()
Gets the value of the niInformation property.
|
String |
getNspDistributionIters()
Gets the value of the nspDistributionIters property.
|
String |
getNspFlag()
Gets the value of the nspFlag property.
|
NspInformation |
getNspInformation()
Gets the value of the nspInformation property.
|
String |
getOccamFlag()
Gets the value of the occamFlag property.
|
List<ProteinSummaryDataFilter> |
getProteinSummaryDataFilter()
Gets the value of the proteinSummaryDataFilter property.
|
String |
getRunOptions()
Gets the value of the runOptions property.
|
void |
setDegenFlag(String value)
Sets the value of the degenFlag property.
|
void |
setFinalPeptideWtIters(String value)
Sets the value of the finalPeptideWtIters property.
|
void |
setFpkmFlag(String value)
Sets the value of the fpkmFlag property.
|
void |
setGroupsFlag(String value)
Sets the value of the groupsFlag property.
|
void |
setInitialPeptideWtIters(String value)
Sets the value of the initialPeptideWtIters property.
|
void |
setNspDistributionIters(String value)
Sets the value of the nspDistributionIters property.
|
void |
setNspFlag(String value)
Sets the value of the nspFlag property.
|
void |
setNspInformation(NspInformation value)
Sets the value of the nspInformation property.
|
void |
setOccamFlag(String value)
Sets the value of the occamFlag property.
|
void |
setRunOptions(String value)
Sets the value of the runOptions property.
|
protected NspInformation nspInformation
protected List<FpkmInformation> fpkmInformation
protected List<NiInformation> niInformation
protected List<ProteinSummaryDataFilter> proteinSummaryDataFilter
protected String occamFlag
protected String groupsFlag
protected String degenFlag
protected String nspFlag
protected String fpkmFlag
protected String initialPeptideWtIters
protected String nspDistributionIters
protected String finalPeptideWtIters
protected String runOptions
public NspInformation getNspInformation()
NspInformationpublic void setNspInformation(NspInformation value)
value - allowed object is
NspInformationpublic List<FpkmInformation> getFpkmInformation()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the fpkmInformation property.
For example, to add a new item, do as follows:
getFpkmInformation().add(newItem);
Objects of the following type(s) are allowed in the list
FpkmInformation
public List<NiInformation> getNiInformation()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the niInformation property.
For example, to add a new item, do as follows:
getNiInformation().add(newItem);
Objects of the following type(s) are allowed in the list
NiInformation
public List<ProteinSummaryDataFilter> getProteinSummaryDataFilter()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the proteinSummaryDataFilter property.
For example, to add a new item, do as follows:
getProteinSummaryDataFilter().add(newItem);
Objects of the following type(s) are allowed in the list
ProteinSummaryDataFilter
public String getOccamFlag()
Stringpublic void setOccamFlag(String value)
value - allowed object is
Stringpublic String getGroupsFlag()
Stringpublic void setGroupsFlag(String value)
value - allowed object is
Stringpublic String getDegenFlag()
Stringpublic void setDegenFlag(String value)
value - allowed object is
Stringpublic String getNspFlag()
Stringpublic void setNspFlag(String value)
value - allowed object is
Stringpublic String getFpkmFlag()
Stringpublic void setFpkmFlag(String value)
value - allowed object is
Stringpublic String getInitialPeptideWtIters()
Stringpublic void setInitialPeptideWtIters(String value)
value - allowed object is
Stringpublic String getNspDistributionIters()
Stringpublic void setNspDistributionIters(String value)
value - allowed object is
Stringpublic String getFinalPeptideWtIters()
Stringpublic void setFinalPeptideWtIters(String value)
value - allowed object is
Stringpublic String getRunOptions()
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