public class PeptideprophetSummary extends Object
Java class for anonymous complex type.
The following schema fragment specifies the expected content contained within this class.
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="inputfile" type="{http://regis-web.systemsbiology.net/pepXML}inputFileType" maxOccurs="unbounded"/>
<element name="roc_error_data" type="{http://regis-web.systemsbiology.net/pepXML}rocErrorDataType" maxOccurs="unbounded" minOccurs="0"/>
<element name="distribution_point" maxOccurs="unbounded" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<attribute name="fvalue" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="obs_1_distr" use="required" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
<attribute name="model_1_pos_distr" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="model_1_neg_distr" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="obs_2_distr" use="required" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
<attribute name="model_2_pos_distr" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="model_2_neg_distr" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="obs_3_distr" use="required" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
<attribute name="model_3_pos_distr" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="model_3_neg_distr" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="obs_4_distr" use="required" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
<attribute name="model_4_pos_distr" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="model_4_neg_distr" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="obs_5_distr" use="required" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
<attribute name="model_5_pos_distr" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="model_5_neg_distr" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="obs_6_distr" use="required" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
<attribute name="model_6_pos_distr" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="model_6_neg_distr" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="obs_7_distr" use="required" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
<attribute name="model_7_pos_distr" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="model_7_neg_distr" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
</restriction>
</complexContent>
</complexType>
</element>
<element name="mixture_model" maxOccurs="unbounded" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<choice maxOccurs="unbounded">
<element name="mixturemodel_distribution" maxOccurs="unbounded">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="posmodel_distribution">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="parameter" type="{http://regis-web.systemsbiology.net/pepXML}nameValueType" maxOccurs="unbounded"/>
</sequence>
<attribute name="type" type="{http://regis-web.systemsbiology.net/pepXML}model_dis_type" />
</restriction>
</complexContent>
</complexType>
</element>
<element name="negmodel_distribution">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="parameter" type="{http://regis-web.systemsbiology.net/pepXML}nameValueType" maxOccurs="unbounded"/>
</sequence>
<attribute name="type" type="{http://regis-web.systemsbiology.net/pepXML}model_dis_type" />
</restriction>
</complexContent>
</complexType>
</element>
</sequence>
<attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
</restriction>
</complexContent>
</complexType>
</element>
<element name="mixturemodel" maxOccurs="unbounded">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="point" maxOccurs="unbounded">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<attribute name="value" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="pos_dens" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="neg_dens" type="{http://www.w3.org/2001/XMLSchema}float" />
</restriction>
</complexContent>
</complexType>
</element>
</sequence>
<attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="pos_bandwidth" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="neg_bandwidth" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
</restriction>
</complexContent>
</complexType>
</element>
</choice>
<attribute name="precursor_ion_charge" use="required" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
<attribute name="comments" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="prior_probability" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="est_tot_correct" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="tot_num_spectra" use="required" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
<attribute name="num_iterations" use="required" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
</restriction>
</complexContent>
</complexType>
</element>
</sequence>
<attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="author" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="min_prob" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="options" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="est_tot_num_correct" type="{http://www.w3.org/2001/XMLSchema}float" />
</restriction>
</complexContent>
</complexType>
| Modifier and Type | Class and Description |
|---|---|
static class |
PeptideprophetSummary.DistributionPoint
Java class for anonymous complex type.
|
static class |
PeptideprophetSummary.MixtureModelling
Java class for anonymous complex type.
|
| Modifier and Type | Field and Description |
|---|---|
protected String |
author |
protected List<PeptideprophetSummary.DistributionPoint> |
distributionPoint |
protected Float |
estTotNumCorrect |
protected List<InputFileType> |
inputfile |
protected float |
minProb |
protected List<PeptideprophetSummary.MixtureModelling> |
mixtureModel |
protected String |
options |
protected List<RocErrorDataType> |
rocErrorData |
protected String |
version |
| Constructor and Description |
|---|
PeptideprophetSummary() |
| Modifier and Type | Method and Description |
|---|---|
String |
getAuthor()
Gets the value of the author property.
|
List<PeptideprophetSummary.DistributionPoint> |
getDistributionPoint()
Gets the value of the distributionPoint property.
|
Float |
getEstTotNumCorrect()
Gets the value of the estTotNumCorrect property.
|
List<InputFileType> |
getInputfile()
Gets the value of the inputfile property.
|
float |
getMinProb()
Gets the value of the minProb property.
|
List<PeptideprophetSummary.MixtureModelling> |
getMixtureModel()
Gets the value of the mixtureModel property.
|
String |
getOptions()
Gets the value of the options property.
|
List<RocErrorDataType> |
getRocErrorData()
Gets the value of the rocErrorData property.
|
String |
getVersion()
Gets the value of the version property.
|
void |
setAuthor(String value)
Sets the value of the author property.
|
void |
setEstTotNumCorrect(Float value)
Sets the value of the estTotNumCorrect property.
|
void |
setMinProb(float value)
Sets the value of the minProb property.
|
void |
setOptions(String value)
Sets the value of the options property.
|
void |
setVersion(String value)
Sets the value of the version property.
|
protected List<InputFileType> inputfile
protected List<RocErrorDataType> rocErrorData
protected List<PeptideprophetSummary.DistributionPoint> distributionPoint
protected List<PeptideprophetSummary.MixtureModelling> mixtureModel
protected String version
protected String author
protected float minProb
protected String options
protected Float estTotNumCorrect
public List<InputFileType> getInputfile()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the inputfile property.
For example, to add a new item, do as follows:
getInputfile().add(newItem);
Objects of the following type(s) are allowed in the list
InputFileType
public List<RocErrorDataType> getRocErrorData()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the rocErrorData property.
For example, to add a new item, do as follows:
getRocErrorData().add(newItem);
Objects of the following type(s) are allowed in the list
RocErrorDataType
public List<PeptideprophetSummary.DistributionPoint> getDistributionPoint()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the distributionPoint property.
For example, to add a new item, do as follows:
getDistributionPoint().add(newItem);
Objects of the following type(s) are allowed in the list
PeptideprophetSummary.DistributionPoint
public List<PeptideprophetSummary.MixtureModelling> getMixtureModel()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the mixtureModel property.
For example, to add a new item, do as follows:
getMixtureModel().add(newItem);
Objects of the following type(s) are allowed in the list
PeptideprophetSummary.MixtureModelling
public String getVersion()
Stringpublic void setVersion(String value)
value - allowed object is
Stringpublic String getAuthor()
Stringpublic void setAuthor(String value)
value - allowed object is
Stringpublic float getMinProb()
public void setMinProb(float value)
public String getOptions()
Stringpublic void setOptions(String value)
value - allowed object is
Stringpublic Float getEstTotNumCorrect()
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