public class SearchSummary extends Object
Java class for anonymous complex type.
The following schema fragment specifies the expected content contained within this class.
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="search_database" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<attribute name="local_path" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="URL" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="database_name" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="orig_database_url" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="database_release_date" type="{http://www.w3.org/2001/XMLSchema}dateTime" />
<attribute name="database_release_identifier" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="size_in_db_entries" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
<attribute name="size_of_residues" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
<attribute name="type" use="required">
<simpleType>
<restriction base="{http://www.w3.org/2001/XMLSchema}string">
<enumeration value="AA"/>
<enumeration value="NA"/>
</restriction>
</simpleType>
</attribute>
</restriction>
</complexContent>
</complexType>
</element>
<element name="enzymatic_search_constraint" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<attribute name="enzyme" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="max_num_internal_cleavages" use="required" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
<attribute name="min_number_termini" use="required" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
</restriction>
</complexContent>
</complexType>
</element>
<element name="sequence_search_constraint" maxOccurs="unbounded" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<attribute name="sequence" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
</restriction>
</complexContent>
</complexType>
</element>
<element name="aminoacid_modification" maxOccurs="unbounded" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<attribute name="aminoacid" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="massdiff" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="mass" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="variable" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="peptide_terminus" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="protein_terminus" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="symbol" type="{http://regis-web.systemsbiology.net/pepXML}aa_symbolType" />
<attribute name="binary" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="description" type="{http://www.w3.org/2001/XMLSchema}string" />
</restriction>
</complexContent>
</complexType>
</element>
<element name="terminal_modification" maxOccurs="unbounded" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<attribute name="terminus" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="massdiff" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="mass" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="variable" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="symbol" type="{http://regis-web.systemsbiology.net/pepXML}term_symbolType" />
<attribute name="protein_terminus" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="description" type="{http://www.w3.org/2001/XMLSchema}string" />
</restriction>
</complexContent>
</complexType>
</element>
<element name="parameter" type="{http://regis-web.systemsbiology.net/pepXML}nameValueType" maxOccurs="unbounded" minOccurs="0"/>
</sequence>
<attribute name="base_name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="search_engine" use="required" type="{http://regis-web.systemsbiology.net/pepXML}engineType" />
<attribute name="search_engine_version" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="precursor_mass_type" use="required" type="{http://regis-web.systemsbiology.net/pepXML}massType" />
<attribute name="fragment_mass_type" use="required" type="{http://regis-web.systemsbiology.net/pepXML}massType" />
<attribute name="out_data_type" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="out_data" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="search_id" use="required" type="{http://regis-web.systemsbiology.net/pepXML}positiveInt" />
</restriction>
</complexContent>
</complexType>
| Modifier and Type | Field and Description |
|---|---|
protected List<AminoacidModification> |
aminoacidModification |
protected String |
baseName |
protected EnzymaticSearchConstraint |
enzymaticSearchConstraint |
protected MassType |
fragmentMassType |
protected String |
outData |
protected String |
outDataType |
protected List<NameValueType> |
parameter |
protected MassType |
precursorMassType |
protected SearchDatabase |
searchDatabase |
protected EngineType |
searchEngine |
protected String |
searchEngineVersion |
protected long |
searchId |
protected List<SequenceSearchConstraint> |
sequenceSearchConstraint |
protected List<TerminalModification> |
terminalModification |
| Constructor and Description |
|---|
SearchSummary() |
| Modifier and Type | Method and Description |
|---|---|
List<AminoacidModification> |
getAminoacidModification()
Gets the value of the aminoacidModification property.
|
String |
getBaseName()
Gets the value of the baseName property.
|
EnzymaticSearchConstraint |
getEnzymaticSearchConstraint()
Gets the value of the enzymaticSearchConstraint property.
|
MassType |
getFragmentMassType()
Gets the value of the fragmentMassType property.
|
String |
getOutData()
Gets the value of the outData property.
|
String |
getOutDataType()
Gets the value of the outDataType property.
|
List<NameValueType> |
getParameter()
Gets the value of the parameter property.
|
MassType |
getPrecursorMassType()
Gets the value of the precursorMassType property.
|
SearchDatabase |
getSearchDatabase()
Gets the value of the searchDatabase property.
|
EngineType |
getSearchEngine()
Gets the value of the searchEngine property.
|
String |
getSearchEngineVersion()
Gets the value of the searchEngineVersion property.
|
long |
getSearchId()
Gets the value of the searchId property.
|
List<SequenceSearchConstraint> |
getSequenceSearchConstraint()
Gets the value of the sequenceSearchConstraint property.
|
List<TerminalModification> |
getTerminalModification()
Gets the value of the terminalModification property.
|
void |
setBaseName(String value)
Sets the value of the baseName property.
|
void |
setEnzymaticSearchConstraint(EnzymaticSearchConstraint value)
Sets the value of the enzymaticSearchConstraint property.
|
void |
setFragmentMassType(MassType value)
Sets the value of the fragmentMassType property.
|
void |
setOutData(String value)
Sets the value of the outData property.
|
void |
setOutDataType(String value)
Sets the value of the outDataType property.
|
void |
setPrecursorMassType(MassType value)
Sets the value of the precursorMassType property.
|
void |
setSearchDatabase(SearchDatabase value)
Sets the value of the searchDatabase property.
|
void |
setSearchEngine(EngineType value)
Sets the value of the searchEngine property.
|
void |
setSearchEngineVersion(String value)
Sets the value of the searchEngineVersion property.
|
void |
setSearchId(long value)
Sets the value of the searchId property.
|
protected SearchDatabase searchDatabase
protected EnzymaticSearchConstraint enzymaticSearchConstraint
protected List<SequenceSearchConstraint> sequenceSearchConstraint
protected List<AminoacidModification> aminoacidModification
protected List<TerminalModification> terminalModification
protected List<NameValueType> parameter
protected String baseName
protected EngineType searchEngine
protected String searchEngineVersion
protected MassType precursorMassType
protected MassType fragmentMassType
protected String outDataType
protected String outData
protected long searchId
public SearchDatabase getSearchDatabase()
SearchDatabasepublic void setSearchDatabase(SearchDatabase value)
value - allowed object is
SearchDatabasepublic EnzymaticSearchConstraint getEnzymaticSearchConstraint()
EnzymaticSearchConstraintpublic void setEnzymaticSearchConstraint(EnzymaticSearchConstraint value)
value - allowed object is
EnzymaticSearchConstraintpublic List<SequenceSearchConstraint> getSequenceSearchConstraint()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the sequenceSearchConstraint property.
For example, to add a new item, do as follows:
getSequenceSearchConstraint().add(newItem);
Objects of the following type(s) are allowed in the list
SequenceSearchConstraint
public List<AminoacidModification> getAminoacidModification()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the aminoacidModification property.
For example, to add a new item, do as follows:
getAminoacidModification().add(newItem);
Objects of the following type(s) are allowed in the list
AminoacidModification
public List<TerminalModification> getTerminalModification()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the terminalModification property.
For example, to add a new item, do as follows:
getTerminalModification().add(newItem);
Objects of the following type(s) are allowed in the list
TerminalModification
public List<NameValueType> getParameter()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the parameter property.
For example, to add a new item, do as follows:
getParameter().add(newItem);
Objects of the following type(s) are allowed in the list
NameValueType
public String getBaseName()
Stringpublic void setBaseName(String value)
value - allowed object is
Stringpublic EngineType getSearchEngine()
EngineTypepublic void setSearchEngine(EngineType value)
value - allowed object is
EngineTypepublic String getSearchEngineVersion()
Stringpublic void setSearchEngineVersion(String value)
value - allowed object is
Stringpublic MassType getPrecursorMassType()
MassTypepublic void setPrecursorMassType(MassType value)
value - allowed object is
MassTypepublic MassType getFragmentMassType()
MassTypepublic void setFragmentMassType(MassType value)
value - allowed object is
MassTypepublic String getOutDataType()
Stringpublic void setOutDataType(String value)
value - allowed object is
Stringpublic String getOutData()
Stringpublic void setOutData(String value)
value - allowed object is
Stringpublic long getSearchId()
public void setSearchId(long value)
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