All Classes
Aa
AbstractContactType
AbstractContactType
AbstractFile
AbstractLCMSDataSource
AbstractParamType
AbstractParamType
AbstractScan
AbstractSpectrum
AbstractXMLBasedDataSource
AbstractXMLBasedIndexElement
ActivationCVTerm
ActivationInfo
ActivationMethodType
ActivationMethodType
ActivationMethodType
Adapter1
Adapter1
Adapter1
Adapter1
Adapter1
Adapter1
Adapter1
Adapter1
Adapter2
Adapter2
Adapter2
Adapter2
Adapter2
Adapter2
Adapter2
Adapter2
AffectedChannel
AffectedChannel
AffectedChannel
AffectedChannel
AffiliationType
AffiliationType
AgilentCefFile
AgilentCefTest
AgilentCompound
AgilentCompounds
AgilentMSPeak
AlternativeProtein
AlternativeProtein
AmbiguousResidueType
AmbiguousResidueType
AminoacidModification
AminoacidModification
AnalysisCollectionType
AnalysisCollectionType
AnalysisDataType
AnalysisDataType
AnalysisProtocolCollectionType
AnalysisProtocolCollectionType
AnalysisResult
AnalysisResult
AnalysisResult
AnalysisResult
AnalysisSampleCollectionType
AnalysisSampleCollectionType
AnalysisSoftwareListType
AnalysisSoftwareListType
AnalysisSoftwareType
AnalysisSoftwareType
AnalysisSummary
AnalysisSummary
AnalysisSummary
AnalysisSummary
AnalysisTimestamp
AnalysisTimestamp
AnalyzerComponentType
ASAPDta
ASAPDta
ASAPPeak
ASAPPeak
ASAPProtAnalysisSummary
ASAPProtAnalysisSummary
ASAPPvalueAnalysisModel
ASAPPvalueAnalysisModel
ASAPPvalueAnalysisSummary
ASAPPvalueAnalysisSummary
ASAPRatio
ASAPRatio
AsapratioContribution
AsapratioContribution
AsapratioContribution
AsapratioLcHeavypeak
AsapratioLcHeavypeak
AsapratioLcHeavypeak
AsapratioLcLightpeak
AsapratioLcLightpeak
AsapratioLcLightpeak
AsapratioPeptideData
AsapratioPeptideData
AsapratioPeptideData
ASAPRatioPvalue
ASAPRatioPvalue
AsapratioResult
AsapratioResult
AsapratioResult
AsapratioSummary
AsapratioSummary
AsapratioSummary
AsapratioTimestamp
AsapratioTimestamp
AsapratioTimestamp
ASAPSeq
ASAPSeq
Attribute
AuditCollectionType
AuditCollectionType
Base64
Base64Context
Base64ContextPooled
Base64DecodingException
Base64Slow
BibliographicReferenceType
BibliographicReferenceType
BinaryDataArrayListType
BinaryDataArrayType
Bioml
BufferedRandomAccessFile
BufferedRandomAccessFile
ByteArrayHolder
ByteArrayHolderFactory
CEF
ChromatogramListType
ChromatogramType
ChunkedFile
ClassFactory
ComponentListType
ComponentType
Compound
CompoundList
ContactRoleType
ContactRoleType
ContributingChannel
ContributingChannel
ContributingChannel
ContributingChannel
CVListType
CVListType
CVListType
CVParamType
CVParamType
CVParamType
CVTerm
CvType
CvType
CVType
DatabaseFiltersType
DatabaseFiltersType
DatabaseRefreshTimestamp
DatabaseRefreshTimestamp
DatabaseRefreshTimestamp
DatabaseTranslationType
DatabaseTranslationType
DataCollectionType
DataCollectionType
DataFilter
DataFilter
DataFilter
DataFilter
DataProcessingListType
DataProcessingType
DatasetDerivation
DatasetDerivation
DatasetDerivation
DatasetDerivation
DBSequenceType
DBSequenceType
DetectorComponentType
Device
DistributionPoint
DistributionPoint
Domain
DoubleRange
EngineType
EngineType
EngineType
EnzymaticSearchConstraint
EnzymaticSearchConstraint
EnzymesType
EnzymesType
EnzymeType
EnzymeType
ErrorPoint
ErrorPoint
Example
Example2
Example3
Example4
ExternalDataType
ExternalDataType
File
FileChunk
FileChunkSource
FileDescriptionType
FileFormatType
FileFormatType
FileListing
FileParsingException
FilterType
FilterType
FpkmDistribution
FpkmDistribution
FpkmInformation
FpkmInformation
FragmentArrayType
FragmentArrayType
FragmentationTableType
FragmentationTableType
FragmentationType
FragmentationType
FragmentMasses
FragmentMasses
FragmentMasses
FragmentMasses
GAMLValues
GPMDBFile
GPMDBParser
Group
Hash
Hash.TYPE
IdentifiableType
IdentifiableType
IIndexedSpectrum
Index
IndexBrokenException
IndexBuilder
IndexBuilder.Info
IndexBuilder.Result
IndexDefault
IndexElement
IndexElementDefault
IndexNotFoundException
IndistinguishablePeptide
IndistinguishablePeptide
IndistinguishableProtein
IndistinguishableProtein
InjectionInfo
InputFileType
InputFileType
InputFileType
InputSpectraType
InputSpectraType
InputSpectrumIdentificationsType
InputSpectrumIdentificationsType
InputsType
InputsType
Instrument
InstrumentConfigurationListType
InstrumentConfigurationType
InstrumentModelCVTerm
Intensity
Intensity
Intensity
Intensity
InteractSummary
InteractSummary
InteractSummary
InterprophetResult
InterprophetResult
InterprophetResult
InterprophetResult.SearchScoreSummaryIProphet
InterprophetSummary
InterprophetSummary
InterprophetSummary
Interval1D
IntervalST
IntervalST.Node
IonId
IonTypeType
IonTypeType
IScan
IScanCollection
IsotopicContributions
IsotopicContributions
IsotopicContributions
IsotopicContributions
ISpectrum
IXRawfile
IXRawfile2
IXRawfile3
IXRawfile4
IXRawfile5
IXVirMS
IXVirMS64
IXVirUV
JAXBCollection
JaxbUtils
JaxbUtils.Cache
LCMSData
LCMSDataSource
LCMSDataSourceDetector
LCMSDataSourceFactory
LCMSDataSubset
LCMSRange
LCMSRangeSet
LCMSRunInfo
LibraResult
LibraResult
LibraResult
LibraResult
LibraResult
LibraResult.Intensity
LibraSummary
LibraSummary
LibraSummary
LibraSummary
LibraSummary
LibraSummary.FragmentMasses
LibraSummary.IsotopicContributions
LibraSummary.IsotopicContributions.ContributingChannel
LibraSummary.IsotopicContributions.ContributingChannel.AffectedChannel
Location
LogHelper
MassTableType
MassTableType
MassType
MassType
MassType
MathHelper
MeasureType
MeasureType
Mixturemodel
Mixturemodel
MixturemodelDistribution
MixturemodelDistribution
MixtureModelling
MixtureModelling
MixtureModelPoint
MixtureModelPoint
MixtureModelType
MixtureModelType
MixtureModelType
MixtureModelType.MixtureModelPoint
Mod
Mod
ModAminoacidMass
ModAminoacidMass
ModAminoacidMass
ModAminoacidMass
ModelDisType
ModelDisType
ModelDisType
ModificationInfo
ModificationInfo
ModificationInfo
ModificationInfo
ModificationParamsType
ModificationParamsType
ModificationType
ModificationType
MS_Activations
MS_Corona
MS_DataTypes
MS_Dep
MS_Detector
MS_IonizationMode
MS_MSOrder
MS_Multiplex
MS_PacketTypes
MS_Param_A
MS_Param_B
MS_Param_F
MS_Param_K
MS_Param_R
MS_Param_V
MS_Polarity
MS_PrecursorEnergy
MS_ScanData
MS_ScanType
MS_SourceCID
MS_SourceCIDType
MS_TurboScan
MS_Wideband
MSDetails
MsftbxInfo
MsmsPipelineAnalysis
MsmsPipelineAnalysis
MsmsPipelineAnalysis
MsmsPipelineAnalysis.AnalysisSummary
MsmsPipelineAnalysis.DatasetDerivation
MsmsPipelineAnalysis.DatasetDerivation.DataFilter
MsmsPipelineAnalysis.MsmsRunSummary
MsmsPipelineAnalysis.MsmsRunSummary.AnalysisTimestamp
MsmsPipelineAnalysis.MsmsRunSummary.SampleEnzyme
MsmsPipelineAnalysis.MsmsRunSummary.SampleEnzyme.Specificity
MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary
MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.AminoacidModification
MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.EnzymaticSearchConstraint
MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.SearchDatabase
MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.SequenceSearchConstraint
MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.TerminalModification
MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery
MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery.SearchResult
MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery.SearchResult.SearchHit
MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery.SearchResult.SearchHit.AlternativeProtein
MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery.SearchResult.SearchHit.AnalysisResult
MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery.SearchResult.SearchHit.ModificationInfo
MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery.SearchResult.SearchHit.ModificationInfo.ModAminoacidMass
MsmsRunSummary
MsmsRunSummary
MSNumpress
MSPeaks
MsRun
MsRun.DataProcessing
MsRun.MsInstrument
MsRun.MsInstrument.MsManufacturer
MsRun.MsInstrument.MsMassAnalyzer
MsRun.ParentFile
MsRun.Separation
MsRun.Spotting
MsRun.Spotting.Plate
MsRun.Spotting.Plate.Pattern
MsRun.Spotting.Plate.Pattern.Orientation
MsRun.Spotting.Plate.Spot
MsRun.Spotting.Robot
MsSoftware
MultiSpectraParser
MzIdentMlExample
MzIdentMLParser
MzIdentMLType
MzIdentMLType
MZMLFile
MZMLIndex
MZMLIndexElement
MZMLIndexParser
MZMLMultiSpectraParser
MZMLMultiSpectraParser.ATTR
MZMLMultiSpectraParser.TAG
MZMLPeaksDecoder
MZMLPeaksDecoder.DecodedData
MZMLRunHeaderParser
MzMLType
MZXMLFile
MZXMLIndex
MZXMLIndexElement
MZXMLIndexParser
MZXMLMultiSpectraParser
MZXMLMultiSpectraParser.ATTR
MZXMLMultiSpectraParser.TAG
MZXMLPeaksDecoder
MZXMLPeaksDecoder.DecodedData
MZXMLRunHeaderParser
NamespaceFilter
NamevalueType
NameValueType
NameValueType
NameValueType
NameValueType
NameValueType
NegmodelDistribution
NegmodelDistribution
NiDistribution
NiDistribution
NiInformation
NiInformation
Note
NspDistribution
NspDistribution
NspInformation
NspInformation
ObjectFactory
ObjectFactory
ObjectFactory
ObjectFactory
ObjectFactory
ObjectFactory
ObjectFactory
ObjectFactory
ObjectFactory
ObjectFactory
ObjectFactory
OffsetLength
OntologyEntryType
Operator
Opts
OrganizationType
OrganizationType
OriginalFile
OutOfMemoryException
P
ParamGroupType
ParamListType
ParamListType
ParamType
ParamType
ParentOrganizationType
ParentOrganizationType
PeaksCompression
Peptide
Peptide
Peptide
PeptideEvidenceRefType
PeptideEvidenceRefType
PeptideEvidenceType
PeptideEvidenceType
PeptideHypothesisType
PeptideHypothesisType
PeptideParentProtein
PeptideParentProtein
PeptideprophetResult
PeptideprophetResult
PeptideprophetResult
PeptideprophetResult.SearchScoreSummary
PeptideprophetSummary
PeptideprophetSummary
PeptideprophetSummary
PeptideprophetSummary.DistributionPoint
PeptideprophetSummary.MixtureModelling
PeptideprophetSummary.MixtureModelling.Mixturemodel
PeptideprophetSummary.MixtureModelling.Mixturemodel.Point
PeptideprophetSummary.MixtureModelling.MixturemodelDistribution
PeptideprophetSummary.MixtureModelling.MixturemodelDistribution.NegmodelDistribution
PeptideprophetSummary.MixtureModelling.MixturemodelDistribution.PosmodelDistribution
PeptideType
PeptideType
PepXmlExample
PepXmlNestedExample
PepXmlParser
PepXmlSimpleExample
PepXmlWriteExample
PersonType
PersonType
Point
Point
Point
Point
Polarity
PooledByteArrayHolders
PosmodelDistribution
PosmodelDistribution
PrecursorInfo
PrecursorListType
PrecursorType
ProcessingMethodType
ProductListType
ProductType
ProgramDetails
ProgramDetails
Protein
Protein
Protein
ProteinAmbiguityGroupType
ProteinAmbiguityGroupType
ProteinAnnotation
ProteinAnnotation
ProteinDetectionHypothesisType
ProteinDetectionHypothesisType
ProteinDetectionListType
ProteinDetectionListType
ProteinDetectionProtocolType
ProteinDetectionProtocolType
ProteinDetectionType
ProteinDetectionType
ProteinGroup
ProteinGroup
ProteinprophetDetails
ProteinprophetDetails
ProteinSummary
ProteinSummary
ProteinSummaryDataFilter
ProteinSummaryDataFilter
ProteinSummaryHeader
ProteinSummaryHeader
ProtocolApplicationType
ProtocolApplicationType
ProtXmlJaxbExample
ProtXmlParser
ProtXmlSimpleExample
ProviderType
ProviderType
PSIMSCV
ReferenceableParamGroupListType
ReferenceableParamGroupRefType
ReferenceableParamGroupType
ResidueType
ResidueType
ReverseLineInputStream
RocDataPoint
RocDataPoint
RocErrorDataType
RocErrorDataType
RocErrorDataType
RocErrorDataType.ErrorPoint
RocErrorDataType.RocDataPoint
RoleType
RoleType
RTRange
RTRanges
RunHeaderBoundsNotFound
RunHeaderParsingException
RunType
SampleEnzyme
SampleEnzyme
SampleListType
SampleType
SampleType
SampleType
Scan
Scan.Maldi
Scan.Peaks
Scan.PrecursorMz
Scan.ScanOrigin
ScanCollectionDefault
ScanCollectionHelper
ScanDefault
ScanIndex
ScanIndexRoot
ScanListType
ScanSettingsListType
ScanSettingsType
ScanType
ScanType
ScanWindowListType
SearchDatabase
SearchDatabase
SearchDatabaseRefType
SearchDatabaseRefType
SearchDatabaseType
SearchDatabaseType
SearchHit
SearchHit
SearchModificationType
SearchModificationType
SearchResult
SearchResult
SearchScoreSummary
SearchScoreSummary
SearchScoreSummaryIProphet
SearchScoreSummaryIProphet
SearchSummary
SearchSummary
SelectedIonListType
SeparationTechniqueType
SequenceCollectionType
SequenceCollectionType
SequenceSearchConstraint
SequenceSearchConstraint
SequentialScanReader
Software
SoftwareListType
SoftwareRefType
SoftwareType
SourceComponentType
SourceFileListType
SourceFileRefListType
SourceFileRefType
SourceFileType
SourceFileType
SourceFileType
Specificity
Specificity
SpecificityRulesType
SpecificityRulesType
SpectraDataType
SpectraDataType
Spectrum
SpectrumDefault
SpectrumIdentificationItemRefType
SpectrumIdentificationItemRefType
SpectrumIdentificationItemType
SpectrumIdentificationItemType
SpectrumIdentificationListType
SpectrumIdentificationListType
SpectrumIdentificationProtocolType
SpectrumIdentificationProtocolType
SpectrumIdentificationResultType
SpectrumIdentificationResultType
SpectrumIdentificationType
SpectrumIdentificationType
SpectrumIDFormatType
SpectrumIDFormatType
SpectrumListType
SpectrumQuery
SpectrumQuery
SpectrumType
SpectrumUtils
StorageStrategy
StringUtils
StrongReference
SubSampleType
SubSampleType
SubstitutionModificationType
SubstitutionModificationType
TargetListType
TerminalModification
TerminalModification
ThermoRawFile
ThermoRawIndex
ThermoRawIndexElement
ThermoTest
ToleranceType
ToleranceType
Trace
TranslationTableType
TranslationTableType
UnitsCV
UserParamType
UserParamType
UserParamType
Values
Xdata
XMLBasedIndexElement
XmlBasedRunHeaderParser
XMLStreamReaderFactory
XPressAnalysisSummary
XPressAnalysisSummary
XpressratioResult
XpressratioResult
XpressratioResult
XpressratioSummary
XpressratioSummary
XpressratioSummary
XpressratioTimestamp
XpressratioTimestamp
XpressratioTimestamp
Ydata
ZlibInflater
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