public class SpectrumQuery extends Object
Java class for anonymous complex type.
The following schema fragment specifies the expected content contained within this class.
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="search_result" maxOccurs="unbounded" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="search_hit" maxOccurs="unbounded" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="alternative_protein" maxOccurs="unbounded" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<attribute name="protein" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="protein_descr" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="num_tol_term" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
<attribute name="protein_mw" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="peptide_prev_aa" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="peptide_next_aa" type="{http://www.w3.org/2001/XMLSchema}string" />
</restriction>
</complexContent>
</complexType>
</element>
<element name="modification_info" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="mod_aminoacid_mass" maxOccurs="unbounded" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<attribute name="position" use="required" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
<attribute name="mass" use="required" type="{http://www.w3.org/2001/XMLSchema}double" />
</restriction>
</complexContent>
</complexType>
</element>
</sequence>
<attribute name="mod_nterm_mass" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="mod_cterm_mass" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="modified_peptide" type="{http://www.w3.org/2001/XMLSchema}string" />
</restriction>
</complexContent>
</complexType>
</element>
<element name="search_score" type="{http://regis-web.systemsbiology.net/pepXML}nameValueType" maxOccurs="unbounded" minOccurs="0"/>
<element name="analysis_result" maxOccurs="unbounded" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<any processContents='lax'/>
</sequence>
<attribute name="analysis" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="id" type="{http://regis-web.systemsbiology.net/pepXML}positiveInt" default="1" />
</restriction>
</complexContent>
</complexType>
</element>
<element name="parameter" type="{http://regis-web.systemsbiology.net/pepXML}nameValueType" maxOccurs="unbounded" minOccurs="0"/>
</sequence>
<attribute name="hit_rank" use="required" type="{http://regis-web.systemsbiology.net/pepXML}positiveInt" />
<attribute name="peptide" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="peptide_prev_aa" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="peptide_next_aa" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="protein" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="num_tot_proteins" use="required" type="{http://www.w3.org/2001/XMLSchema}unsignedInt" />
<attribute name="num_matched_ions" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
<attribute name="tot_num_ions" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
<attribute name="calc_neutral_pep_mass" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="massdiff" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="num_tol_term" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
<attribute name="num_missed_cleavages" type="{http://www.w3.org/2001/XMLSchema}integer" />
<attribute name="num_matched_peptides" type="{http://www.w3.org/2001/XMLSchema}integer" />
<attribute name="is_rejected" default="0">
<simpleType>
<restriction base="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger">
<enumeration value="0"/>
<enumeration value="1"/>
</restriction>
</simpleType>
</attribute>
<attribute name="protein_descr" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="calc_pI" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="protein_mw" type="{http://www.w3.org/2001/XMLSchema}double" />
</restriction>
</complexContent>
</complexType>
</element>
</sequence>
<attribute name="search_id" type="{http://regis-web.systemsbiology.net/pepXML}positiveInt" default="1" />
</restriction>
</complexContent>
</complexType>
</element>
</sequence>
<attribute name="spectrum" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="spectrumNativeID" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="start_scan" use="required" type="{http://www.w3.org/2001/XMLSchema}unsignedInt" />
<attribute name="end_scan" use="required" type="{http://www.w3.org/2001/XMLSchema}unsignedInt" />
<attribute name="retention_time_sec" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="collision_energy" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="compensation_voltage" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="precursor_intensity" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="activation_method" type="{http://regis-web.systemsbiology.net/pepXML}activationMethodType" />
<attribute name="precursor_neutral_mass" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="assumed_charge" use="required" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
<attribute name="search_specification" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="index" use="required" type="{http://regis-web.systemsbiology.net/pepXML}positiveInt" />
</restriction>
</complexContent>
</complexType>
| Modifier and Type | Field and Description |
|---|---|
protected ActivationMethodType |
activationMethod |
protected Integer |
assumedCharge |
protected float |
collisionEnergy |
protected float |
compensationVoltage |
protected long |
endScan |
protected long |
index |
protected float |
precursorIntensity |
protected float |
precursorNeutralMass |
protected float |
retentionTimeSec |
protected List<SearchResult> |
searchResult |
protected String |
searchSpecification |
protected String |
spectrum |
protected String |
spectrumNativeID |
protected long |
startScan |
| Constructor and Description |
|---|
SpectrumQuery() |
| Modifier and Type | Method and Description |
|---|---|
ActivationMethodType |
getActivationMethod()
Gets the value of the activationMethod property.
|
Integer |
getAssumedCharge()
Gets the value of the assumedCharge property.
|
float |
getCollisionEnergy()
Gets the value of the collisionEnergy property.
|
float |
getCompensationVoltage()
Gets the value of the compensationVoltage property.
|
long |
getEndScan()
Gets the value of the endScan property.
|
long |
getIndex()
Gets the value of the index property.
|
float |
getPrecursorIntensity()
Gets the value of the precursorIntensity property.
|
float |
getPrecursorNeutralMass()
Gets the value of the precursorNeutralMass property.
|
float |
getRetentionTimeSec()
Gets the value of the retentionTimeSec property.
|
List<SearchResult> |
getSearchResult()
Gets the value of the searchResult property.
|
String |
getSearchSpecification()
Gets the value of the searchSpecification property.
|
String |
getSpectrum()
Gets the value of the spectrum property.
|
String |
getSpectrumNativeID()
Gets the value of the spectrumNativeID property.
|
long |
getStartScan()
Gets the value of the startScan property.
|
void |
setActivationMethod(ActivationMethodType value)
Sets the value of the activationMethod property.
|
void |
setAssumedCharge(Integer value)
Sets the value of the assumedCharge property.
|
void |
setCollisionEnergy(float value)
Sets the value of the collisionEnergy property.
|
void |
setCompensationVoltage(float value)
Sets the value of the compensationVoltage property.
|
void |
setEndScan(long value)
Sets the value of the endScan property.
|
void |
setIndex(long value)
Sets the value of the index property.
|
void |
setPrecursorIntensity(float value)
Sets the value of the precursorIntensity property.
|
void |
setPrecursorNeutralMass(float value)
Sets the value of the precursorNeutralMass property.
|
void |
setRetentionTimeSec(float value)
Sets the value of the retentionTimeSec property.
|
void |
setSearchSpecification(String value)
Sets the value of the searchSpecification property.
|
void |
setSpectrum(String value)
Sets the value of the spectrum property.
|
void |
setSpectrumNativeID(String value)
Sets the value of the spectrumNativeID property.
|
void |
setStartScan(long value)
Sets the value of the startScan property.
|
protected List<SearchResult> searchResult
protected String spectrum
protected String spectrumNativeID
protected long startScan
protected long endScan
protected float retentionTimeSec
protected float collisionEnergy
protected float compensationVoltage
protected float precursorIntensity
protected ActivationMethodType activationMethod
protected float precursorNeutralMass
protected Integer assumedCharge
protected String searchSpecification
protected long index
public List<SearchResult> getSearchResult()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the searchResult property.
For example, to add a new item, do as follows:
getSearchResult().add(newItem);
Objects of the following type(s) are allowed in the list
SearchResult
public String getSpectrum()
Stringpublic void setSpectrum(String value)
value - allowed object is
Stringpublic String getSpectrumNativeID()
Stringpublic void setSpectrumNativeID(String value)
value - allowed object is
Stringpublic long getStartScan()
public void setStartScan(long value)
public long getEndScan()
public void setEndScan(long value)
public float getRetentionTimeSec()
public void setRetentionTimeSec(float value)
public float getCollisionEnergy()
public void setCollisionEnergy(float value)
public float getCompensationVoltage()
public void setCompensationVoltage(float value)
public float getPrecursorIntensity()
public void setPrecursorIntensity(float value)
public ActivationMethodType getActivationMethod()
ActivationMethodTypepublic void setActivationMethod(ActivationMethodType value)
value - allowed object is
ActivationMethodTypepublic float getPrecursorNeutralMass()
public void setPrecursorNeutralMass(float value)
public Integer getAssumedCharge()
Stringpublic void setAssumedCharge(Integer value)
value - allowed object is
Stringpublic String getSearchSpecification()
Stringpublic void setSearchSpecification(String value)
value - allowed object is
Stringpublic long getIndex()
public void setIndex(long value)
Copyright © 2017. All rights reserved.