public class PeptideEvidenceType extends IdentifiableType
Java class for PeptideEvidenceType complex type.
The following schema fragment specifies the expected content contained within this class.
<complexType name="PeptideEvidenceType">
<complexContent>
<extension base="{http://psidev.info/psi/pi/mzIdentML/1.2}IdentifiableType">
<sequence>
<group ref="{http://psidev.info/psi/pi/mzIdentML/1.2}ParamGroup" maxOccurs="unbounded" minOccurs="0"/>
</sequence>
<attribute name="dBSequence_ref" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="peptide_ref" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="start" type="{http://www.w3.org/2001/XMLSchema}int" />
<attribute name="end" type="{http://www.w3.org/2001/XMLSchema}int" />
<attribute name="pre">
<simpleType>
<restriction base="{http://www.w3.org/2001/XMLSchema}string">
<pattern value="[ABCDEFGHIJKLMNOPQRSTUVWXYZ?\-]{1}"/>
</restriction>
</simpleType>
</attribute>
<attribute name="post">
<simpleType>
<restriction base="{http://www.w3.org/2001/XMLSchema}string">
<pattern value="[ABCDEFGHIJKLMNOPQRSTUVWXYZ?\-]{1}"/>
</restriction>
</simpleType>
</attribute>
<attribute name="translationTable_ref" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="frame" type="{http://psidev.info/psi/pi/mzIdentML/1.2}allowed_frames" />
<attribute name="isDecoy" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
</extension>
</complexContent>
</complexType>
| Modifier and Type | Field and Description |
|---|---|
protected String |
dbSequenceRef |
protected Integer |
end |
protected Integer |
frame |
protected Boolean |
isDecoy |
protected List<AbstractParamType> |
paramGroup |
protected String |
peptideRef |
protected String |
post |
protected String |
pre |
protected Integer |
start |
protected String |
translationTableRef |
id, name| Constructor and Description |
|---|
PeptideEvidenceType() |
| Modifier and Type | Method and Description |
|---|---|
String |
getDBSequenceRef()
Gets the value of the dbSequenceRef property.
|
Integer |
getEnd()
Gets the value of the end property.
|
Integer |
getFrame()
Gets the value of the frame property.
|
List<AbstractParamType> |
getParamGroup()
Additional parameters or descriptors for the PeptideEvidence.Gets the value of the paramGroup property.
|
String |
getPeptideRef()
Gets the value of the peptideRef property.
|
String |
getPost()
Gets the value of the post property.
|
String |
getPre()
Gets the value of the pre property.
|
Integer |
getStart()
Gets the value of the start property.
|
String |
getTranslationTableRef()
Gets the value of the translationTableRef property.
|
boolean |
isIsDecoy()
Gets the value of the isDecoy property.
|
void |
setDBSequenceRef(String value)
Sets the value of the dbSequenceRef property.
|
void |
setEnd(Integer value)
Sets the value of the end property.
|
void |
setFrame(Integer value)
Sets the value of the frame property.
|
void |
setIsDecoy(Boolean value)
Sets the value of the isDecoy property.
|
void |
setPeptideRef(String value)
Sets the value of the peptideRef property.
|
void |
setPost(String value)
Sets the value of the post property.
|
void |
setPre(String value)
Sets the value of the pre property.
|
void |
setStart(Integer value)
Sets the value of the start property.
|
void |
setTranslationTableRef(String value)
Sets the value of the translationTableRef property.
|
getId, getName, setId, setNameprotected List<AbstractParamType> paramGroup
protected String dbSequenceRef
protected String peptideRef
protected Integer start
protected Integer end
protected String pre
protected String post
protected String translationTableRef
protected Integer frame
protected Boolean isDecoy
public List<AbstractParamType> getParamGroup()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the paramGroup property.
For example, to add a new item, do as follows:
getParamGroup().add(newItem);
Objects of the following type(s) are allowed in the list
CVParamType
UserParamType
public String getDBSequenceRef()
Stringpublic void setDBSequenceRef(String value)
value - allowed object is
Stringpublic String getPeptideRef()
Stringpublic void setPeptideRef(String value)
value - allowed object is
Stringpublic Integer getStart()
Integerpublic void setStart(Integer value)
value - allowed object is
Integerpublic Integer getEnd()
Integerpublic void setEnd(Integer value)
value - allowed object is
Integerpublic void setPre(String value)
value - allowed object is
Stringpublic String getPost()
Stringpublic void setPost(String value)
value - allowed object is
Stringpublic String getTranslationTableRef()
Stringpublic void setTranslationTableRef(String value)
value - allowed object is
Stringpublic Integer getFrame()
Integerpublic void setFrame(Integer value)
value - allowed object is
Integerpublic boolean isIsDecoy()
BooleanCopyright © 2017. All rights reserved.