public class ProteinDetectionHypothesisType extends IdentifiableType
Java class for ProteinDetectionHypothesisType complex type.
The following schema fragment specifies the expected content contained within this class.
<complexType name="ProteinDetectionHypothesisType">
<complexContent>
<extension base="{http://psidev.info/psi/pi/mzIdentML/1.2}IdentifiableType">
<sequence>
<element name="PeptideHypothesis" type="{http://psidev.info/psi/pi/mzIdentML/1.2}PeptideHypothesisType" maxOccurs="unbounded"/>
<group ref="{http://psidev.info/psi/pi/mzIdentML/1.2}ParamGroup" maxOccurs="unbounded" minOccurs="0"/>
</sequence>
<attribute name="dBSequence_ref" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="passThreshold" use="required" type="{http://www.w3.org/2001/XMLSchema}boolean" />
</extension>
</complexContent>
</complexType>
| Modifier and Type | Field and Description |
|---|---|
protected String |
dbSequenceRef |
protected List<AbstractParamType> |
paramGroup |
protected boolean |
passThreshold |
protected List<PeptideHypothesisType> |
peptideHypothesis |
id, name| Constructor and Description |
|---|
ProteinDetectionHypothesisType() |
| Modifier and Type | Method and Description |
|---|---|
String |
getDBSequenceRef()
Gets the value of the dbSequenceRef property.
|
List<AbstractParamType> |
getParamGroup()
Scores or parameters associated with this ProteinDetectionHypothesis e.g.
|
List<PeptideHypothesisType> |
getPeptideHypothesis()
Gets the value of the peptideHypothesis property.
|
boolean |
isPassThreshold()
Gets the value of the passThreshold property.
|
void |
setDBSequenceRef(String value)
Sets the value of the dbSequenceRef property.
|
void |
setPassThreshold(boolean value)
Sets the value of the passThreshold property.
|
getId, getName, setId, setNameprotected List<PeptideHypothesisType> peptideHypothesis
protected List<AbstractParamType> paramGroup
protected String dbSequenceRef
protected boolean passThreshold
public List<PeptideHypothesisType> getPeptideHypothesis()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the peptideHypothesis property.
For example, to add a new item, do as follows:
getPeptideHypothesis().add(newItem);
Objects of the following type(s) are allowed in the list
PeptideHypothesisType
public List<AbstractParamType> getParamGroup()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the paramGroup property.
For example, to add a new item, do as follows:
getParamGroup().add(newItem);
Objects of the following type(s) are allowed in the list
CVParamType
UserParamType
public String getDBSequenceRef()
Stringpublic void setDBSequenceRef(String value)
value - allowed object is
Stringpublic boolean isPassThreshold()
public void setPassThreshold(boolean value)
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