public class MsRun extends Object
Java class for anonymous complex type.
The following schema fragment specifies the expected content contained within this class.
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="parentFile" maxOccurs="unbounded">
<complexType>
<simpleContent>
<extension base="<http://www.w3.org/2001/XMLSchema>anySimpleType">
<attribute name="fileName" use="required" type="{http://www.w3.org/2001/XMLSchema}anyURI" />
<attribute name="fileType" use="required">
<simpleType>
<restriction base="{http://www.w3.org/2001/XMLSchema}string">
<enumeration value="RAWData"/>
<enumeration value="processedData"/>
</restriction>
</simpleType>
</attribute>
<attribute name="fileSha1" use="required">
<simpleType>
<restriction base="{http://www.w3.org/2001/XMLSchema}string">
<length value="40"/>
</restriction>
</simpleType>
</attribute>
</extension>
</simpleContent>
</complexType>
</element>
<element name="msInstrument" maxOccurs="unbounded" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="msManufacturer">
<complexType>
<complexContent>
<extension base="{http://sashimi.sourceforge.net/schema_revision/mzXML_3.2}ontologyEntryType">
</extension>
</complexContent>
</complexType>
</element>
<element name="msModel" type="{http://sashimi.sourceforge.net/schema_revision/mzXML_3.2}ontologyEntryType"/>
<element name="msIonisation" type="{http://sashimi.sourceforge.net/schema_revision/mzXML_3.2}ontologyEntryType"/>
<element name="msMassAnalyzer">
<complexType>
<complexContent>
<extension base="{http://sashimi.sourceforge.net/schema_revision/mzXML_3.2}ontologyEntryType">
</extension>
</complexContent>
</complexType>
</element>
<element name="msDetector" type="{http://sashimi.sourceforge.net/schema_revision/mzXML_3.2}ontologyEntryType"/>
<element ref="{http://sashimi.sourceforge.net/schema_revision/mzXML_3.2}software"/>
<element name="msResolution" type="{http://sashimi.sourceforge.net/schema_revision/mzXML_3.2}ontologyEntryType" minOccurs="0"/>
<element ref="{http://sashimi.sourceforge.net/schema_revision/mzXML_3.2}operator" minOccurs="0"/>
<sequence maxOccurs="unbounded" minOccurs="0">
<element name="nameValue" type="{http://sashimi.sourceforge.net/schema_revision/mzXML_3.2}namevalueType"/>
<element name="comment" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
</sequence>
</sequence>
<attribute name="msInstrumentID" type="{http://www.w3.org/2001/XMLSchema}int" />
</restriction>
</complexContent>
</complexType>
</element>
<element name="dataProcessing" maxOccurs="unbounded">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element ref="{http://sashimi.sourceforge.net/schema_revision/mzXML_3.2}software"/>
<sequence maxOccurs="unbounded" minOccurs="0">
<element name="processingOperation" type="{http://sashimi.sourceforge.net/schema_revision/mzXML_3.2}namevalueType"/>
<element name="comment" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
</sequence>
</sequence>
<attribute name="intensityCutoff" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="centroided" type="{http://www.w3.org/2001/XMLSchema}boolean" />
<attribute name="deisotoped" type="{http://www.w3.org/2001/XMLSchema}boolean" />
<attribute name="chargeDeconvoluted" type="{http://www.w3.org/2001/XMLSchema}boolean" />
<attribute name="spotIntegration" type="{http://www.w3.org/2001/XMLSchema}boolean" />
</restriction>
</complexContent>
</complexType>
</element>
<element name="separation" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element ref="{http://sashimi.sourceforge.net/schema_revision/mzXML_3.2}separationTechnique" maxOccurs="unbounded"/>
</sequence>
</restriction>
</complexContent>
</complexType>
</element>
<element name="spotting" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="plate" maxOccurs="unbounded">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="plateManufacturer" type="{http://sashimi.sourceforge.net/schema_revision/mzXML_3.2}ontologyEntryType"/>
<element name="plateModel" type="{http://sashimi.sourceforge.net/schema_revision/mzXML_3.2}ontologyEntryType"/>
<element name="pattern" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="spottingPattern" type="{http://sashimi.sourceforge.net/schema_revision/mzXML_3.2}ontologyEntryType"/>
<element name="orientation">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<attribute name="firstSpotID" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="secondSpotID" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
</restriction>
</complexContent>
</complexType>
</element>
</sequence>
</restriction>
</complexContent>
</complexType>
</element>
<element name="spot" maxOccurs="unbounded">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="maldiMatrix" type="{http://sashimi.sourceforge.net/schema_revision/mzXML_3.2}ontologyEntryType"/>
</sequence>
<attribute name="spotID" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="spotXPosition" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="spotYPosition" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="spotDiameter" type="{http://www.w3.org/2001/XMLSchema}positiveInteger" />
</restriction>
</complexContent>
</complexType>
</element>
</sequence>
<attribute name="plateID" use="required" type="{http://www.w3.org/2001/XMLSchema}positiveInteger" />
<attribute name="spotXCount" use="required" type="{http://www.w3.org/2001/XMLSchema}positiveInteger" />
<attribute name="spotYCount" use="required" type="{http://www.w3.org/2001/XMLSchema}positiveInteger" />
</restriction>
</complexContent>
</complexType>
</element>
<element name="robot" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="robotManufacturer" type="{http://sashimi.sourceforge.net/schema_revision/mzXML_3.2}ontologyEntryType"/>
<element name="robotModel" type="{http://sashimi.sourceforge.net/schema_revision/mzXML_3.2}ontologyEntryType"/>
</sequence>
<attribute name="timePerSpot" use="required" type="{http://www.w3.org/2001/XMLSchema}duration" />
<attribute name="deadVolume" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
</restriction>
</complexContent>
</complexType>
</element>
</sequence>
</restriction>
</complexContent>
</complexType>
</element>
<element ref="{http://sashimi.sourceforge.net/schema_revision/mzXML_3.2}scan" maxOccurs="unbounded"/>
<element name="sha1" minOccurs="0">
<simpleType>
<restriction base="{http://www.w3.org/2001/XMLSchema}string">
<length value="40"/>
</restriction>
</simpleType>
</element>
</sequence>
<attribute name="scanCount" type="{http://www.w3.org/2001/XMLSchema}positiveInteger" />
<attribute name="startTime" type="{http://www.w3.org/2001/XMLSchema}duration" />
<attribute name="endTime" type="{http://www.w3.org/2001/XMLSchema}duration" />
</restriction>
</complexContent>
</complexType>
| Modifier and Type | Class and Description |
|---|---|
static class |
MsRun.DataProcessing
Java class for anonymous complex type.
|
static class |
MsRun.MsInstrument
Java class for anonymous complex type.
|
static class |
MsRun.ParentFile
Java class for anonymous complex type.
|
static class |
MsRun.Separation
Java class for anonymous complex type.
|
static class |
MsRun.Spotting
Java class for anonymous complex type.
|
| Modifier and Type | Field and Description |
|---|---|
protected List<MsRun.DataProcessing> |
dataProcessing |
protected String |
endTime |
protected List<MsRun.MsInstrument> |
msInstrument |
protected List<MsRun.ParentFile> |
parentFile |
protected List<Scan> |
scan |
protected BigInteger |
scanCount |
protected MsRun.Separation |
separation |
protected String |
sha1 |
protected MsRun.Spotting |
spotting |
protected String |
startTime |
| Constructor and Description |
|---|
MsRun() |
| Modifier and Type | Method and Description |
|---|---|
List<MsRun.DataProcessing> |
getDataProcessing()
Gets the value of the dataProcessing property.
|
String |
getEndTime()
Gets the value of the endTime property.
|
List<MsRun.MsInstrument> |
getMsInstrument()
Gets the value of the msInstrument property.
|
List<MsRun.ParentFile> |
getParentFile()
Gets the value of the parentFile property.
|
List<Scan> |
getScan()
Gets the value of the scan property.
|
BigInteger |
getScanCount()
Gets the value of the scanCount property.
|
MsRun.Separation |
getSeparation()
Gets the value of the separation property.
|
String |
getSha1()
Gets the value of the sha1 property.
|
MsRun.Spotting |
getSpotting()
Gets the value of the spotting property.
|
String |
getStartTime()
Gets the value of the startTime property.
|
void |
setEndTime(String value)
Sets the value of the endTime property.
|
void |
setScanCount(BigInteger value)
Sets the value of the scanCount property.
|
void |
setSeparation(MsRun.Separation value)
Sets the value of the separation property.
|
void |
setSha1(String value)
Sets the value of the sha1 property.
|
void |
setSpotting(MsRun.Spotting value)
Sets the value of the spotting property.
|
void |
setStartTime(String value)
Sets the value of the startTime property.
|
protected List<MsRun.ParentFile> parentFile
protected List<MsRun.MsInstrument> msInstrument
protected List<MsRun.DataProcessing> dataProcessing
protected MsRun.Separation separation
protected MsRun.Spotting spotting
protected String sha1
protected BigInteger scanCount
protected String startTime
protected String endTime
public List<MsRun.ParentFile> getParentFile()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the parentFile property.
For example, to add a new item, do as follows:
getParentFile().add(newItem);
Objects of the following type(s) are allowed in the list
MsRun.ParentFile
public List<MsRun.MsInstrument> getMsInstrument()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the msInstrument property.
For example, to add a new item, do as follows:
getMsInstrument().add(newItem);
Objects of the following type(s) are allowed in the list
MsRun.MsInstrument
public List<MsRun.DataProcessing> getDataProcessing()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the dataProcessing property.
For example, to add a new item, do as follows:
getDataProcessing().add(newItem);
Objects of the following type(s) are allowed in the list
MsRun.DataProcessing
public MsRun.Separation getSeparation()
MsRun.Separationpublic void setSeparation(MsRun.Separation value)
value - allowed object is
MsRun.Separationpublic MsRun.Spotting getSpotting()
MsRun.Spottingpublic void setSpotting(MsRun.Spotting value)
value - allowed object is
MsRun.Spottingpublic List<Scan> getScan()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the scan property.
For example, to add a new item, do as follows:
getScan().add(newItem);
Objects of the following type(s) are allowed in the list
Scan
public String getSha1()
Stringpublic void setSha1(String value)
value - allowed object is
Stringpublic BigInteger getScanCount()
BigIntegerpublic void setScanCount(BigInteger value)
value - allowed object is
BigIntegerpublic String getStartTime()
Durationpublic void setStartTime(String value)
value - allowed object is
Durationpublic String getEndTime()
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