| Class | Description |
|---|---|
| AnalyzerComponentType |
This element must be used to describe an Analyzer Component Type.
|
| BinaryDataArrayListType |
List of binary data arrays.
|
| BinaryDataArrayType |
The structure into which encoded binary data goes.
|
| ChromatogramListType |
List of chromatograms.
|
| ChromatogramType |
A single chromatogram.
|
| ComponentListType |
List with the different components used in the mass spectrometer.
|
| ComponentType |
Java class for ComponentType complex type.
|
| CVListType |
Container for one or more controlled vocabulary definitions.
|
| CVParamType |
This element holds additional data or annotation.
|
| CVType |
Information about an ontology or CV source and a short 'lookup' tag to refer to.
|
| DataProcessingListType |
List and descriptions of data processing applied to this data.
|
| DataProcessingType |
Description of the way in which a particular software was used.
|
| DetectorComponentType |
This element must be used to describe a Detector Component Type.
|
| FileDescriptionType |
Information pertaining to the entire mzML file (i.e.
|
| InstrumentConfigurationListType |
List and descriptions of instrument configurations.
|
| InstrumentConfigurationType |
Description of a particular hardware configuration of a mass spectrometer.
|
| MzMLType |
This is the root element for the Proteomics Standards Initiative (PSI) mzML schema, which is intended to capture the use of a mass spectrometer, the data generated, and the initial processing of that data (to the level of the peak list).
|
| ObjectFactory |
This object contains factory methods for each
Java content interface and Java element interface
generated in the umich.ms.fileio.filetypes.mzml.jaxb package.
|
| ParamGroupType |
Structure allowing the use of a controlled (cvParam) or uncontrolled vocabulary (userParam), or a reference to a predefined set of these in this mzML file (paramGroupRef).
|
| PrecursorListType |
List and descriptions of precursor isolations to the spectrumRef currently being described, ordered.
|
| PrecursorType |
The method of precursor ion selection and activation
|
| ProcessingMethodType |
Java class for ProcessingMethodType complex type.
|
| ProductListType |
List and descriptions of product isolations to the spectrumRef currently being described, ordered.
|
| ProductType |
The method of product ion selection and activation in a precursor ion scan
|
| ReferenceableParamGroupListType |
Container for a list of referenceableParamGroups
|
| ReferenceableParamGroupRefType |
A reference to a previously defined ParamGroup, which is a reusable container of one or more cvParams.
|
| ReferenceableParamGroupType |
A collection of CVParam and UserParam elements that can be referenced from elsewhere in this mzML document by using the 'paramGroupRef' element in that location to reference the 'id' attribute value of this element.
|
| RunType |
A run in mzML should correspond to a single, consecutive and coherent set of scans on an instrument.
|
| SampleListType |
List and descriptions of samples.
|
| SampleType |
Expansible description of the sample used to generate the dataset, named in sampleName.
|
| ScanListType |
List and descriptions of scans.
|
| ScanSettingsListType |
List with the descriptions of the acquisition settings applied prior to the start of data acquisition.
|
| ScanSettingsType |
Description of the acquisition settings of the instrument prior to the start of the run.
|
| ScanType |
Scan or acquisition from original raw file used to create this peak list, as specified in sourceFile.
|
| ScanWindowListType |
Java class for ScanWindowListType complex type.
|
| SelectedIonListType |
The list of selected precursor ions.
|
| SoftwareListType |
List and descriptions of software used to acquire and/or process the data in this mzML file.
|
| SoftwareRefType |
Reference to a previously defined software element
|
| SoftwareType |
Software information.
|
| SourceComponentType |
This element must be used to describe a Source Component Type.
|
| SourceFileListType |
List and descriptions of the source files this mzML document was generated or derived from
|
| SourceFileRefListType |
Java class for SourceFileRefListType complex type.
|
| SourceFileRefType |
Java class for SourceFileRefType complex type.
|
| SourceFileType |
Description of the source file, including location and type.
|
| SpectrumListType |
List and descriptions of spectra.
|
| SpectrumType |
The structure that captures the generation of a peak list (including the underlying acquisitions).
|
| TargetListType |
Target list (or 'inclusion list') configured prior to the run.
|
| UserParamType |
Uncontrolled user parameters (essentially allowing free text).
|
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