public class ScanCollectionHelper extends Object
| Modifier and Type | Field and Description |
|---|---|
static double |
MAX_PRECURSOR_GROUP_SIZE_DIFF
Defines the ratio of numbers of scans in the larges "precursor group" to
the smallest "precursor group".
Formula used: Math.abs(maxScansInGroup - minScansInGroup)) / minScansInGroupA precursor group is a group of scans, which satisfy one of the two conditions: precursor windows were not known for scans, but several scans had exactly the same precursor mass precursor windows were known and there was significant overlap between the precursor windows There also must be more than one scan in EACH group, for a run to be auto-detected as a DIA run. |
| Modifier and Type | Method and Description |
|---|---|
static void |
finalizePrecursorWindows(IScanCollection scans)
Calling this method only makes sense if the whole LC/MS structure has been parsed.
|
static void |
finalizeScanCollection(IScanCollection scans)
Sets relationships between parent/child scans based on scan numbering.
|
public static double MAX_PRECURSOR_GROUP_SIZE_DIFF
Math.abs(maxScansInGroup - minScansInGroup)) / minScansInGrouppublic static void finalizeScanCollection(IScanCollection scans) throws FileParsingException
scans - FileParsingExceptionpublic static void finalizePrecursorWindows(IScanCollection scans)
scans - the scan collection, it will be modified in-placeCopyright © 2017. All rights reserved.