public static class MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary extends Object
Java class for anonymous complex type.
The following schema fragment specifies the expected content contained within this class.
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="search_database" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<attribute name="local_path" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="URL" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="database_name" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="orig_database_url" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="database_release_date" type="{http://www.w3.org/2001/XMLSchema}dateTime" />
<attribute name="database_release_identifier" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="size_in_db_entries" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
<attribute name="size_of_residues" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
<attribute name="type" use="required">
<simpleType>
<restriction base="{http://www.w3.org/2001/XMLSchema}string">
<enumeration value="AA"/>
<enumeration value="NA"/>
</restriction>
</simpleType>
</attribute>
</restriction>
</complexContent>
</complexType>
</element>
<element name="enzymatic_search_constraint" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<attribute name="enzyme" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="max_num_internal_cleavages" use="required" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
<attribute name="min_number_termini" use="required" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
</restriction>
</complexContent>
</complexType>
</element>
<element name="sequence_search_constraint" maxOccurs="unbounded" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<attribute name="sequence" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
</restriction>
</complexContent>
</complexType>
</element>
<element name="aminoacid_modification" maxOccurs="unbounded" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<attribute name="aminoacid" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="massdiff" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="mass" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="variable" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="peptide_terminus" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="symbol" type="{http://regis-web.systemsbiology.net/pepXML}aa_symbolType" />
<attribute name="binary" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="description" type="{http://www.w3.org/2001/XMLSchema}string" />
</restriction>
</complexContent>
</complexType>
</element>
<element name="terminal_modification" maxOccurs="unbounded" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<attribute name="terminus" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="massdiff" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="mass" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="variable" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="symbol" type="{http://regis-web.systemsbiology.net/pepXML}term_symbolType" />
<attribute name="protein_terminus" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="description" type="{http://www.w3.org/2001/XMLSchema}string" />
</restriction>
</complexContent>
</complexType>
</element>
<element name="parameter" type="{http://regis-web.systemsbiology.net/pepXML}nameValueType" maxOccurs="unbounded" minOccurs="0"/>
</sequence>
<attribute name="base_name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="search_engine" use="required" type="{http://regis-web.systemsbiology.net/pepXML}engineType" />
<attribute name="search_engine_version" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="precursor_mass_type" use="required" type="{http://regis-web.systemsbiology.net/pepXML}massType" />
<attribute name="fragment_mass_type" use="required" type="{http://regis-web.systemsbiology.net/pepXML}massType" />
<attribute name="out_data_type" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="out_data" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="search_id" use="required" type="{http://regis-web.systemsbiology.net/pepXML}positiveInt" />
</restriction>
</complexContent>
</complexType>
| Modifier and Type | Class and Description |
|---|---|
static class |
MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.AminoacidModification
Java class for anonymous complex type.
|
static class |
MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.EnzymaticSearchConstraint
Java class for anonymous complex type.
|
static class |
MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.SearchDatabase
Java class for anonymous complex type.
|
static class |
MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.SequenceSearchConstraint
Java class for anonymous complex type.
|
static class |
MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.TerminalModification
Java class for anonymous complex type.
|
| Modifier and Type | Field and Description |
|---|---|
protected List<MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.AminoacidModification> |
aminoacidModification |
protected String |
baseName |
protected MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.EnzymaticSearchConstraint |
enzymaticSearchConstraint |
protected MassType |
fragmentMassType |
protected String |
outData |
protected String |
outDataType |
protected List<NameValueType> |
parameter |
protected MassType |
precursorMassType |
protected MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.SearchDatabase |
searchDatabase |
protected EngineType |
searchEngine |
protected String |
searchEngineVersion |
protected long |
searchId |
protected List<MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.SequenceSearchConstraint> |
sequenceSearchConstraint |
protected List<MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.TerminalModification> |
terminalModification |
| Constructor and Description |
|---|
MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary() |
| Modifier and Type | Method and Description |
|---|---|
List<MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.AminoacidModification> |
getAminoacidModification()
Gets the value of the aminoacidModification property.
|
String |
getBaseName()
Gets the value of the baseName property.
|
MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.EnzymaticSearchConstraint |
getEnzymaticSearchConstraint()
Gets the value of the enzymaticSearchConstraint property.
|
MassType |
getFragmentMassType()
Gets the value of the fragmentMassType property.
|
String |
getOutData()
Gets the value of the outData property.
|
String |
getOutDataType()
Gets the value of the outDataType property.
|
List<NameValueType> |
getParameter()
Gets the value of the parameter property.
|
MassType |
getPrecursorMassType()
Gets the value of the precursorMassType property.
|
MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.SearchDatabase |
getSearchDatabase()
Gets the value of the searchDatabase property.
|
EngineType |
getSearchEngine()
Gets the value of the searchEngine property.
|
String |
getSearchEngineVersion()
Gets the value of the searchEngineVersion property.
|
long |
getSearchId()
Gets the value of the searchId property.
|
List<MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.SequenceSearchConstraint> |
getSequenceSearchConstraint()
Gets the value of the sequenceSearchConstraint property.
|
List<MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.TerminalModification> |
getTerminalModification()
Gets the value of the terminalModification property.
|
void |
setBaseName(String value)
Sets the value of the baseName property.
|
void |
setEnzymaticSearchConstraint(MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.EnzymaticSearchConstraint value)
Sets the value of the enzymaticSearchConstraint property.
|
void |
setFragmentMassType(MassType value)
Sets the value of the fragmentMassType property.
|
void |
setOutData(String value)
Sets the value of the outData property.
|
void |
setOutDataType(String value)
Sets the value of the outDataType property.
|
void |
setPrecursorMassType(MassType value)
Sets the value of the precursorMassType property.
|
void |
setSearchDatabase(MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.SearchDatabase value)
Sets the value of the searchDatabase property.
|
void |
setSearchEngine(EngineType value)
Sets the value of the searchEngine property.
|
void |
setSearchEngineVersion(String value)
Sets the value of the searchEngineVersion property.
|
void |
setSearchId(long value)
Sets the value of the searchId property.
|
protected MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.SearchDatabase searchDatabase
protected MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.EnzymaticSearchConstraint enzymaticSearchConstraint
protected List<MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.SequenceSearchConstraint> sequenceSearchConstraint
protected List<MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.AminoacidModification> aminoacidModification
protected List<MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.TerminalModification> terminalModification
protected List<NameValueType> parameter
protected String baseName
protected EngineType searchEngine
protected String searchEngineVersion
protected MassType precursorMassType
protected MassType fragmentMassType
protected String outDataType
protected String outData
protected long searchId
public MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary()
public MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.SearchDatabase getSearchDatabase()
MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.SearchDatabasepublic void setSearchDatabase(MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.SearchDatabase value)
value - allowed object is
MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.SearchDatabasepublic MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.EnzymaticSearchConstraint getEnzymaticSearchConstraint()
MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.EnzymaticSearchConstraintpublic void setEnzymaticSearchConstraint(MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.EnzymaticSearchConstraint value)
value - allowed object is
MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.EnzymaticSearchConstraintpublic List<MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.SequenceSearchConstraint> getSequenceSearchConstraint()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the sequenceSearchConstraint property.
For example, to add a new item, do as follows:
getSequenceSearchConstraint().add(newItem);
Objects of the following type(s) are allowed in the list
MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.SequenceSearchConstraint
public List<MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.AminoacidModification> getAminoacidModification()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the aminoacidModification property.
For example, to add a new item, do as follows:
getAminoacidModification().add(newItem);
Objects of the following type(s) are allowed in the list
MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.AminoacidModification
public List<MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.TerminalModification> getTerminalModification()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the terminalModification property.
For example, to add a new item, do as follows:
getTerminalModification().add(newItem);
Objects of the following type(s) are allowed in the list
MsmsPipelineAnalysis.MsmsRunSummary.SearchSummary.TerminalModification
public List<NameValueType> getParameter()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the parameter property.
For example, to add a new item, do as follows:
getParameter().add(newItem);
Objects of the following type(s) are allowed in the list
NameValueType
public String getBaseName()
Stringpublic void setBaseName(String value)
value - allowed object is
Stringpublic EngineType getSearchEngine()
EngineTypepublic void setSearchEngine(EngineType value)
value - allowed object is
EngineTypepublic String getSearchEngineVersion()
Stringpublic void setSearchEngineVersion(String value)
value - allowed object is
Stringpublic MassType getPrecursorMassType()
MassTypepublic void setPrecursorMassType(MassType value)
value - allowed object is
MassTypepublic MassType getFragmentMassType()
MassTypepublic void setFragmentMassType(MassType value)
value - allowed object is
MassTypepublic String getOutDataType()
Stringpublic void setOutDataType(String value)
value - allowed object is
Stringpublic String getOutData()
Stringpublic void setOutData(String value)
value - allowed object is
Stringpublic long getSearchId()
public void setSearchId(long value)
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