public class PeptideType extends IdentifiableType
Java class for PeptideType complex type.
The following schema fragment specifies the expected content contained within this class.
<complexType name="PeptideType">
<complexContent>
<extension base="{http://psidev.info/psi/pi/mzIdentML/1.2}IdentifiableType">
<sequence>
<element name="PeptideSequence" type="{http://psidev.info/psi/pi/mzIdentML/1.2}sequence"/>
<element name="Modification" type="{http://psidev.info/psi/pi/mzIdentML/1.2}ModificationType" maxOccurs="unbounded" minOccurs="0"/>
<element name="SubstitutionModification" type="{http://psidev.info/psi/pi/mzIdentML/1.2}SubstitutionModificationType" maxOccurs="unbounded" minOccurs="0"/>
<group ref="{http://psidev.info/psi/pi/mzIdentML/1.2}ParamGroup" maxOccurs="unbounded" minOccurs="0"/>
</sequence>
</extension>
</complexContent>
</complexType>
| Modifier and Type | Field and Description |
|---|---|
protected List<ModificationType> |
modification |
protected List<AbstractParamType> |
paramGroup |
protected String |
peptideSequence |
protected List<SubstitutionModificationType> |
substitutionModification |
id, name| Constructor and Description |
|---|
PeptideType() |
| Modifier and Type | Method and Description |
|---|---|
List<ModificationType> |
getModification()
Gets the value of the modification property.
|
List<AbstractParamType> |
getParamGroup()
Additional descriptors of this peptide sequence Gets the value of the paramGroup property.
|
String |
getPeptideSequence()
Gets the value of the peptideSequence property.
|
List<SubstitutionModificationType> |
getSubstitutionModification()
Gets the value of the substitutionModification property.
|
void |
setPeptideSequence(String value)
Sets the value of the peptideSequence property.
|
getId, getName, setId, setNameprotected String peptideSequence
protected List<ModificationType> modification
protected List<SubstitutionModificationType> substitutionModification
protected List<AbstractParamType> paramGroup
public String getPeptideSequence()
Stringpublic void setPeptideSequence(String value)
value - allowed object is
Stringpublic List<ModificationType> getModification()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the modification property.
For example, to add a new item, do as follows:
getModification().add(newItem);
Objects of the following type(s) are allowed in the list
ModificationType
public List<SubstitutionModificationType> getSubstitutionModification()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the substitutionModification property.
For example, to add a new item, do as follows:
getSubstitutionModification().add(newItem);
Objects of the following type(s) are allowed in the list
SubstitutionModificationType
public List<AbstractParamType> getParamGroup()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the paramGroup property.
For example, to add a new item, do as follows:
getParamGroup().add(newItem);
Objects of the following type(s) are allowed in the list
CVParamType
UserParamType
Copyright © 2017. All rights reserved.