public class LibraSummary extends Object
Java class for anonymous complex type.
The following schema fragment specifies the expected content contained within this class.
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="fragment_masses" maxOccurs="unbounded">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<attribute name="channel" use="required" type="{http://regis-web.systemsbiology.net/protXML}positiveInt" />
<attribute name="mz" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
</restriction>
</complexContent>
</complexType>
</element>
<element name="isotopic_contributions" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="contributing_channel" maxOccurs="unbounded">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="affected_channel" maxOccurs="unbounded">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<attribute name="channel" use="required" type="{http://regis-web.systemsbiology.net/protXML}positiveInt" />
<attribute name="correction" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
</restriction>
</complexContent>
</complexType>
</element>
</sequence>
<attribute name="channel" use="required" type="{http://regis-web.systemsbiology.net/protXML}positiveInt" />
</restriction>
</complexContent>
</complexType>
</element>
</sequence>
</restriction>
</complexContent>
</complexType>
</element>
</sequence>
<attribute name="mass_tolerance" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="centroiding_preference" use="required" type="{http://www.w3.org/2001/XMLSchema}int" />
<attribute name="normalization" use="required" type="{http://www.w3.org/2001/XMLSchema}int" />
<attribute name="output_type" use="required" type="{http://www.w3.org/2001/XMLSchema}int" />
<attribute name="channel_code" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="min_pep_prob" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="min_pep_wt" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
<attribute name="min_prot_prob" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
</restriction>
</complexContent>
</complexType>
| Modifier and Type | Field and Description |
|---|---|
protected int |
centroidingPreference |
protected String |
channelCode |
protected List<FragmentMasses> |
fragmentMasses |
protected IsotopicContributions |
isotopicContributions |
protected float |
massTolerance |
protected float |
minPepProb |
protected float |
minPepWt |
protected float |
minProtProb |
protected int |
normalization |
protected int |
outputType |
| Constructor and Description |
|---|
LibraSummary() |
| Modifier and Type | Method and Description |
|---|---|
int |
getCentroidingPreference()
Gets the value of the centroidingPreference property.
|
String |
getChannelCode()
Gets the value of the channelCode property.
|
List<FragmentMasses> |
getFragmentMasses()
Gets the value of the fragmentMasses property.
|
IsotopicContributions |
getIsotopicContributions()
Gets the value of the isotopicContributions property.
|
float |
getMassTolerance()
Gets the value of the massTolerance property.
|
float |
getMinPepProb()
Gets the value of the minPepProb property.
|
float |
getMinPepWt()
Gets the value of the minPepWt property.
|
float |
getMinProtProb()
Gets the value of the minProtProb property.
|
int |
getNormalization()
Gets the value of the normalization property.
|
int |
getOutputType()
Gets the value of the outputType property.
|
void |
setCentroidingPreference(int value)
Sets the value of the centroidingPreference property.
|
void |
setChannelCode(String value)
Sets the value of the channelCode property.
|
void |
setIsotopicContributions(IsotopicContributions value)
Sets the value of the isotopicContributions property.
|
void |
setMassTolerance(float value)
Sets the value of the massTolerance property.
|
void |
setMinPepProb(float value)
Sets the value of the minPepProb property.
|
void |
setMinPepWt(float value)
Sets the value of the minPepWt property.
|
void |
setMinProtProb(float value)
Sets the value of the minProtProb property.
|
void |
setNormalization(int value)
Sets the value of the normalization property.
|
void |
setOutputType(int value)
Sets the value of the outputType property.
|
protected List<FragmentMasses> fragmentMasses
protected IsotopicContributions isotopicContributions
protected float massTolerance
protected int centroidingPreference
protected int normalization
protected int outputType
protected String channelCode
protected float minPepProb
protected float minPepWt
protected float minProtProb
public List<FragmentMasses> getFragmentMasses()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the fragmentMasses property.
For example, to add a new item, do as follows:
getFragmentMasses().add(newItem);
Objects of the following type(s) are allowed in the list
FragmentMasses
public IsotopicContributions getIsotopicContributions()
IsotopicContributionspublic void setIsotopicContributions(IsotopicContributions value)
value - allowed object is
IsotopicContributionspublic float getMassTolerance()
public void setMassTolerance(float value)
public int getCentroidingPreference()
public void setCentroidingPreference(int value)
public int getNormalization()
public void setNormalization(int value)
public int getOutputType()
public void setOutputType(int value)
public String getChannelCode()
Stringpublic void setChannelCode(String value)
value - allowed object is
Stringpublic float getMinPepProb()
public void setMinPepProb(float value)
public float getMinPepWt()
public void setMinPepWt(float value)
public float getMinProtProb()
public void setMinProtProb(float value)
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