public class ProteinGroup extends Object
Java class for anonymous complex type.
The following schema fragment specifies the expected content contained within this class.
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="protein" maxOccurs="unbounded">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="analysis_result" maxOccurs="unbounded" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<any processContents='lax'/>
</sequence>
<attribute name="analysis" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="id" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" default="1" />
</restriction>
</complexContent>
</complexType>
</element>
<element name="parameter" type="{http://regis-web.systemsbiology.net/protXML}nameValueType" maxOccurs="unbounded" minOccurs="0"/>
<element name="annotation" type="{http://regis-web.systemsbiology.net/protXML}protein_annotation" minOccurs="0"/>
<element name="indistinguishable_protein" maxOccurs="unbounded" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="parameter" type="{http://regis-web.systemsbiology.net/protXML}nameValueType" maxOccurs="unbounded" minOccurs="0"/>
<element name="annotation" type="{http://regis-web.systemsbiology.net/protXML}protein_annotation" minOccurs="0"/>
</sequence>
<attribute name="protein_name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
</restriction>
</complexContent>
</complexType>
</element>
<element name="peptide" maxOccurs="unbounded">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="parameter" type="{http://regis-web.systemsbiology.net/protXML}nameValueType" maxOccurs="unbounded" minOccurs="0"/>
<element name="modification_info" type="{http://regis-web.systemsbiology.net/protXML}modification_info" maxOccurs="unbounded" minOccurs="0"/>
<element name="peptide_parent_protein" maxOccurs="unbounded" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<attribute name="protein_name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
</restriction>
</complexContent>
</complexType>
</element>
<element name="indistinguishable_peptide" maxOccurs="unbounded" minOccurs="0">
<complexType>
<complexContent>
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
<sequence>
<element name="modification_info" type="{http://regis-web.systemsbiology.net/protXML}modification_info" maxOccurs="unbounded" minOccurs="0"/>
</sequence>
<attribute name="peptide_sequence" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="charge" use="required" type="{http://www.w3.org/2001/XMLSchema}positiveInteger" />
<attribute name="calc_neutral_pep_mass" type="{http://www.w3.org/2001/XMLSchema}double" />
</restriction>
</complexContent>
</complexType>
</element>
</sequence>
<attribute name="peptide_sequence" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="charge" use="required" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
<attribute name="initial_probability" use="required" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="nsp_adjusted_probability" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="fpkm_adjusted_probability" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="ni_adjusted_probability" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="exp_sibling_ion_instances" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="exp_sibling_ion_bin" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="exp_tot_instances" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="peptide_group_designator" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="weight" type="{http://www.w3.org/2001/XMLSchema}double" default="1.0" />
<attribute name="is_nondegenerate_evidence" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="n_enzymatic_termini" use="required" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
<attribute name="n_sibling_peptides" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="n_sibling_peptides_bin" type="{http://www.w3.org/2001/XMLSchema}integer" default="0" />
<attribute name="max_fpkm" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="fpkm_bin" type="{http://www.w3.org/2001/XMLSchema}integer" default="0" />
<attribute name="n_instances" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
<attribute name="calc_neutral_pep_mass" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="is_contributing_evidence" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
</restriction>
</complexContent>
</complexType>
</element>
</sequence>
<attribute name="protein_name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="probability" use="required" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="percent_coverage" type="{http://www.w3.org/2001/XMLSchema}double" />
<attribute name="n_indistinguishable_proteins" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
<attribute name="unique_stripped_peptides" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="group_sibling_id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="total_number_peptides" type="{http://www.w3.org/2001/XMLSchema}integer" />
<attribute name="total_number_distinct_peptides" type="{http://www.w3.org/2001/XMLSchema}integer" />
<attribute name="subsuming_protein_entry" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="pct_spectrum_ids" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="confidence" type="{http://www.w3.org/2001/XMLSchema}double" />
</restriction>
</complexContent>
</complexType>
</element>
</sequence>
<attribute name="group_number" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="pseudo_name" type="{http://www.w3.org/2001/XMLSchema}string" />
<attribute name="probability" use="required" type="{http://www.w3.org/2001/XMLSchema}double" />
</restriction>
</complexContent>
</complexType>
| Modifier and Type | Field and Description |
|---|---|
protected String |
groupNumber |
protected double |
probability |
protected List<Protein> |
protein |
protected String |
pseudoName |
| Constructor and Description |
|---|
ProteinGroup() |
| Modifier and Type | Method and Description |
|---|---|
String |
getGroupNumber()
Gets the value of the groupNumber property.
|
double |
getProbability()
Gets the value of the probability property.
|
List<Protein> |
getProtein()
Gets the value of the protein property.
|
String |
getPseudoName()
Gets the value of the pseudoName property.
|
void |
setGroupNumber(String value)
Sets the value of the groupNumber property.
|
void |
setProbability(double value)
Sets the value of the probability property.
|
void |
setPseudoName(String value)
Sets the value of the pseudoName property.
|
protected String groupNumber
protected String pseudoName
protected double probability
public List<Protein> getProtein()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set method for the protein property.
For example, to add a new item, do as follows:
getProtein().add(newItem);
Objects of the following type(s) are allowed in the list
Protein
public String getGroupNumber()
Stringpublic void setGroupNumber(String value)
value - allowed object is
Stringpublic String getPseudoName()
Stringpublic void setPseudoName(String value)
value - allowed object is
Stringpublic double getProbability()
public void setProbability(double value)
Copyright © 2017. All rights reserved.