| Package | Description |
|---|---|
| umich.ms.fileio.filetypes.mzml.jaxb |
| Class and Description |
|---|
| AnalyzerComponentType
This element must be used to describe an Analyzer Component Type.
|
| BinaryDataArrayListType
List of binary data arrays.
|
| BinaryDataArrayType
The structure into which encoded binary data goes.
|
| ChromatogramListType
List of chromatograms.
|
| ChromatogramType
A single chromatogram.
|
| ComponentListType
List with the different components used in the mass spectrometer.
|
| ComponentType
Java class for ComponentType complex type.
|
| CVListType
Container for one or more controlled vocabulary definitions.
|
| CVParamType
This element holds additional data or annotation.
|
| CVType
Information about an ontology or CV source and a short 'lookup' tag to refer to.
|
| DataProcessingListType
List and descriptions of data processing applied to this data.
|
| DataProcessingType
Description of the way in which a particular software was used.
|
| DetectorComponentType
This element must be used to describe a Detector Component Type.
|
| FileDescriptionType
Information pertaining to the entire mzML file (i.e.
|
| InstrumentConfigurationListType
List and descriptions of instrument configurations.
|
| InstrumentConfigurationType
Description of a particular hardware configuration of a mass spectrometer.
|
| MzMLType
This is the root element for the Proteomics Standards Initiative (PSI) mzML schema, which is intended to capture the use of a mass spectrometer, the data generated, and the initial processing of that data (to the level of the peak list).
|
| ParamGroupType
Structure allowing the use of a controlled (cvParam) or uncontrolled vocabulary (userParam), or a reference to a predefined set of these in this mzML file (paramGroupRef).
|
| PrecursorListType
List and descriptions of precursor isolations to the spectrumRef currently being described, ordered.
|
| PrecursorType
The method of precursor ion selection and activation
|
| ProcessingMethodType
Java class for ProcessingMethodType complex type.
|
| ProductListType
List and descriptions of product isolations to the spectrumRef currently being described, ordered.
|
| ProductType
The method of product ion selection and activation in a precursor ion scan
|
| ReferenceableParamGroupListType
Container for a list of referenceableParamGroups
|
| ReferenceableParamGroupRefType
A reference to a previously defined ParamGroup, which is a reusable container of one or more cvParams.
|
| ReferenceableParamGroupType
A collection of CVParam and UserParam elements that can be referenced from elsewhere in this mzML document by using the 'paramGroupRef' element in that location to reference the 'id' attribute value of this element.
|
| RunType
A run in mzML should correspond to a single, consecutive and coherent set of scans on an instrument.
|
| SampleListType
List and descriptions of samples.
|
| SampleType
Expansible description of the sample used to generate the dataset, named in sampleName.
|
| ScanListType
List and descriptions of scans.
|
| ScanSettingsListType
List with the descriptions of the acquisition settings applied prior to the start of data acquisition.
|
| ScanSettingsType
Description of the acquisition settings of the instrument prior to the start of the run.
|
| ScanType
Scan or acquisition from original raw file used to create this peak list, as specified in sourceFile.
|
| ScanWindowListType
Java class for ScanWindowListType complex type.
|
| SelectedIonListType
The list of selected precursor ions.
|
| SoftwareListType
List and descriptions of software used to acquire and/or process the data in this mzML file.
|
| SoftwareRefType
Reference to a previously defined software element
|
| SoftwareType
Software information.
|
| SourceComponentType
This element must be used to describe a Source Component Type.
|
| SourceFileListType
List and descriptions of the source files this mzML document was generated or derived from
|
| SourceFileRefListType
Java class for SourceFileRefListType complex type.
|
| SourceFileRefType
Java class for SourceFileRefType complex type.
|
| SourceFileType
Description of the source file, including location and type.
|
| SpectrumListType
List and descriptions of spectra.
|
| SpectrumType
The structure that captures the generation of a peak list (including the underlying acquisitions).
|
| TargetListType
Target list (or 'inclusion list') configured prior to the run.
|
| UserParamType
Uncontrolled user parameters (essentially allowing free text).
|
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