| Package | Description |
|---|---|
| umich.ms.fileio.exceptions | |
| umich.ms.fileio.filetypes.mzml | |
| umich.ms.fileio.filetypes.mzxml |
| Modifier and Type | Class and Description |
|---|---|
class |
RunHeaderBoundsNotFound
Created by Dmitry Avtonomov on 2015-10-26.
|
| Modifier and Type | Method and Description |
|---|---|
protected <T> T |
MZMLRunHeaderParser.convertJAXBObjectToDomain(Class<T> clazz,
Object unmarshalled) |
protected InputStream |
MZMLRunHeaderParser.getRunHeaderInputStream(OffsetLength msRunLocation) |
MZMLRunInfo |
MZMLRunHeaderParser.parse() |
| Modifier and Type | Method and Description |
|---|---|
protected abstract <T> T |
XmlBasedRunHeaderParser.convertJAXBObjectToDomain(Class<T> clazz,
Object unmarshalled) |
protected <T> T |
MZXMLRunHeaderParser.convertJAXBObjectToDomain(Class<T> clazz,
Object unmarshalled) |
protected abstract InputStream |
XmlBasedRunHeaderParser.getRunHeaderInputStream(OffsetLength msRunLocation)
Be sure to include all the correct tags in this stream.
|
protected InputStream |
MZXMLRunHeaderParser.getRunHeaderInputStream(OffsetLength msRunLocation)
Reads the whole msRun header portion from the file, appending a closing
</msRun> tag to the end,
so that it could be unmarshalled using JAXB without errors. |
protected OffsetLength |
XmlBasedRunHeaderParser.locateRunHeader(String firstTag,
boolean firstTagIsStart,
boolean firstTagGetStartLoc,
String lastTag,
boolean lastTagIsStart,
boolean lastTagGetStartLoc)
Reads the run header from the file, locating positions of
<firstTag> and first <lastTag> tags. |
abstract LCMSRunInfo |
XmlBasedRunHeaderParser.parse() |
LCMSRunInfo |
MZXMLRunHeaderParser.parse() |
protected <T> T |
XmlBasedRunHeaderParser.parseHeaderWithJAXB(Class<T> clazz,
OffsetLength msRunLocation) |
Copyright © 2017. All rights reserved.