| Modifier and Type | Method and Description |
|---|---|
ISpectrum |
IScan.fetchSpectrum()
Get the spectrum, possibly preloading it from disk.
|
ISpectrum |
IScan.getSpectrum()
Get the spectrum, not trying to loead it from disk, if it wasn't parsed.
|
| Modifier and Type | Method and Description |
|---|---|
Reference<ISpectrum> |
StorageStrategy.getRef(ISpectrum spec) |
| Modifier and Type | Method and Description |
|---|---|
Reference<ISpectrum> |
StorageStrategy.getRef(ISpectrum spec) |
void |
AbstractScan.setSpectrum(ISpectrum spectrum)
Method was added for backwards compatibility, consider using the full signature version
AbstractScan.setSpectrum(umich.ms.datatypes.spectrum.ISpectrum, boolean). |
void |
IScan.setSpectrum(ISpectrum spectrum,
boolean forceOverrideMinMaxSumVals)
Set the spectrumRef for this scan.
|
void |
AbstractScan.setSpectrum(ISpectrum spectrum,
boolean forceOverrideMinMaxSumVals) |
protected abstract void |
AbstractScan.setSpectrumImpl(ISpectrum spectrum)
The implementation of
IScan.setSpectrum(umich.ms.datatypes.spectrum.ISpectrum, boolean)
in this base class will set all the Scan-level variables for you according to the
spectrumRef provided, but you need to define how to store the spectrumRef itself. |
| Modifier and Type | Field and Description |
|---|---|
protected Reference<ISpectrum> |
ScanDefault.spectrumRef |
| Modifier and Type | Method and Description |
|---|---|
ISpectrum |
ScanDefault.fetchSpectrum() |
ISpectrum |
ScanDefault.getSpectrum() |
| Modifier and Type | Method and Description |
|---|---|
Reference<ISpectrum> |
ScanDefault.getSpectrumRef() |
| Modifier and Type | Method and Description |
|---|---|
protected void |
ScanDefault.setSpectrumImpl(ISpectrum spectrum) |
| Modifier and Type | Class and Description |
|---|---|
class |
AbstractSpectrum
Author: Dmitry Avtonomov (dmitriya)
|
| Modifier and Type | Class and Description |
|---|---|
class |
SpectrumDefault
This is a straightforward implementation of AbstractSpectrum using Java arrays
Author: Dmitry Avtonomov (dmitriya)
|
| Modifier and Type | Method and Description |
|---|---|
ISpectrum |
LCMSDataSource.parseSpectrum(int num)
Parse a single spectrumRef from file on disk by it's number.
|
| Modifier and Type | Method and Description |
|---|---|
ISpectrum |
ThermoRawFile.parseSpectrum(int num) |
| Modifier and Type | Method and Description |
|---|---|
ISpectrum |
AbstractXMLBasedDataSource.parseSpectrum(int num) |
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