LCMSDataSource<T extends Index<?>> source
IScanCollection scans
Object USER_DUMMY
boolean isReleasingMemory
com.google.common.collect.Range<C extends Comparable> scanRange
Integer msLevel
DoubleRange mzRange
com.google.common.collect.RangeSet<C extends Comparable> anyLvlSet
Map<K,V> lvlMap
int num
int numRaw
int num
IScanCollection scans
PrecursorInfo precursor
InjectionInfo injectionInfo
List<E> childScans
Double rt
Integer msLevel
Polarity polarity
Instrument instrument
Boolean isCentroided
ScanType scanType
ScanType value.
Use ScanType.fromString(String) to parse a string representation, which
will give you ScanType.UNKNOWN, if the representation could not be parsed. If the value is not present in the
file, leave this field null.Double basePeakMz
Double basePeakIntensity
Double tic
Double scanMzWindowLower
Double scanMzWindowUpper
StorageStrategy storageStrategy
Integer parentScanNum
String parentScanRefRaw
Double isolationWindowMzLo
Double isolationWindowMzHi
Double mzTarget
Double mzTargetMono
Integer charge
ActivationInfo activationInfo
Double intensity
LCMSRunInfo runInfo
ScanIndexRoot index
TreeMap<K,V> msLevel2rangeGroups
StorageStrategy defaultStorageStrategy
boolean isAutoloadSpectra
LCMSDataSource<T extends Index<?>> source
boolean isFinalized
double minMZ
double maxMZ
double minInt
double minIntNonZero
double maxInt
double maxIntMz
double sumInt
double[] mz
double[] intensity
int tasksPerCpuPerBatch
AbstractLCMSDataSource.setNumThreadsForParsing(java.lang.Integer), and set this parameter to 20, then 40 spectra will be read from disk
in one batch and each thread will be given 20 spectra at once for processing.long parsingTimeout
boolean excludeEmptyScans
LCMSRunInfo runInfo
Integer numThreadsForParsing
MZMLIndex index
String id
MZXMLIndex index
ThermoRawIndex index
LCMSRunInfo runInfo
umich.ms.fileio.filetypes.thermo.raw.com4j.IXRawfile5 xRawfile5
String filter
int INDEX_BUILDER_MIN_READ_SIZE
int INDEX_BUILDER_MIN_OVERLAP
int INDEX_BUILDER_READ_BUF_SIZE
org.slf4j.Logger log
OffsetLength offlen
char c
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