| Interface and Description |
|---|
| umich.ms.datatypes.spectrum.IIndexedSpectrum |
| Method and Description |
|---|
| umich.ms.datatypes.scancollection.impl.ScanCollectionDefault.getNum2scan()
This is just a side effect of encapsulating the old Maps into
the new ScanIndex. Use
ScanCollectionDefault.getMapNum2scan() instead. |
| umich.ms.datatypes.scancollection.impl.ScanCollectionDefault.getRt2scan()
This is just a side effect of encapsulating the old Maps into
the new ScanIndex. Use
ScanCollectionDefault.getMapRt2scan() instead. |
| umich.ms.util.xml.XmlUtils.locate(String, TAG_TYPE, POSITION, String, TAG_TYPE, POSITION, long, InputStream)
Try using
XmlUtils.locate(List, List, InputStream, long).
This method uses an XML parser internally, so it's 1) slower than the other method
2) it's reporting of locations is in Characters, not Bytes! |
| umich.ms.fileio.filetypes.xmlbased.AbstractXMLBasedDataSource.parse(List<Integer>)
this method has not been updated to the new parsing version
|
| umich.ms.util.ByteArrayHolder.toString(int)
This method does not properly convert bytes into characters.
As of JDK 1.1, the preferred way to do this is via the
toString(String enc) method, which takes an encoding-name
argument, or the toString() method, which uses the
platform's default character encoding. |
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