public enum PSIMSCV extends Enum<PSIMSCV>
| Modifier and Type | Field and Description |
|---|---|
String |
accession |
String |
defaultStringRepresentation |
String |
description |
static Map<String,org.biojava.nbio.ontology.Term> |
MAP_ANALYZER_TYPE |
static Map<String,InstrumentModelCVTerm> |
MAP_INSTRUMENT_MODEL |
static Map<String,org.biojava.nbio.ontology.Term> |
MAP_IONIZATION_TYPE |
static Map<String,org.biojava.nbio.ontology.Term> |
MAP_MASS_SPECTRUM |
static Map<String,org.biojava.nbio.ontology.Term> |
MAP_NOT_MASS_SPECTRUM |
static Map<javolution.text.CharArray,org.biojava.nbio.ontology.Term> |
MAP_NOT_MASS_SPECTRUM_CHAR |
static Map<String,org.biojava.nbio.ontology.Term> |
MAP_PEAK_PICKING |
static Map<String,org.biojava.nbio.ontology.Term> |
MAP_SPECTRUM_TYPE |
static Map<javolution.text.CharArray,ActivationCVTerm> |
mapCharArr2ActivationCVTerm |
protected static Map<javolution.text.CharArray,PSIMSCV> |
mapCharArr2PSIMSCV |
static Map<String,ActivationCVTerm> |
mapString2ActivationCVTerm |
protected static Map<String,PSIMSCV> |
mapString2PSIMSCV |
static org.biojava.nbio.ontology.Ontology |
ONTOLOGY |
| Modifier and Type | Method and Description |
|---|---|
static String |
activationMethodFromAccession(javolution.text.CharArray msAccession)
Returns the possible shortest abbreviation for a given activation method.
|
static String |
activationMethodFromAccession(String msAccession)
Returns the possible shortest abbreviation for a given activation method.
|
static PSIMSCV |
fromAccession(javolution.text.CharArray msAccession) |
static PSIMSCV |
fromAccession(String msAccession) |
static InstrumentModelCVTerm |
instrumentFromAccession(String msAccession) |
static boolean |
isPeakPickingTerm(String msAccession)
Checks if this accession maps to a known descendant of ["MS:1000035", "peak picking"] term.
|
static PSIMSCV |
valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static PSIMSCV[] |
values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
public static final PSIMSCV UO_SECONDS
public static final PSIMSCV UO_MINUTES
public static final PSIMSCV UO_NANOSECONDS
public static final PSIMSCV UO_MICROSECONDS
public static final PSIMSCV UO_MILLISECONDS
public static final PSIMSCV UO_HOURS
public static final PSIMSCV MS_LEVEL
public static final PSIMSCV MS_POLARITY_POS
public static final PSIMSCV MS_POLARITY_POS_OBSOLETE
public static final PSIMSCV MS_POLARITY_NEG
public static final PSIMSCV MS_POLARITY_NEG_OBSOLETE
public static final PSIMSCV MS_SPECTRUM_TYPE
public static final PSIMSCV MS_MASS_SPECTRUM
public static final PSIMSCV MS_CALIBRATION_SPECTRUM
public static final PSIMSCV MS_MS1_SPECTRUM
public static final PSIMSCV MS_MSN_SPECTRUM
public static final PSIMSCV MS_MSN_SPECTRUM_OBSOLETE_1
public static final PSIMSCV MS_MSN_SPECTRUM_OBSOLETE_2
public static final PSIMSCV MS_SCAN_TYPE_FULL
public static final PSIMSCV MS_SCAN_TYPE_ZOOM
public static final PSIMSCV MS_SCAN_TYPE_SIM
public static final PSIMSCV MS_SCAN_TYPE_CRM
public static final PSIMSCV MS_SCAN_TYPE_SRM
public static final PSIMSCV MS_CENTROIDED
public static final PSIMSCV MS_PROFILE
public static final PSIMSCV MS_MZ_OBSERVED_LO
public static final PSIMSCV MS_MZ_OBSERVED_LO_INST_SETTING
public static final PSIMSCV MS_MZ_OBSERVED_HI
public static final PSIMSCV MS_MZ_OBSERVED_HI_INST_SETTING
public static final PSIMSCV MS_BASEPEAK_MZ
public static final PSIMSCV MS_BASEPEAK_INTENSITY
public static final PSIMSCV MS_TIC
public static final PSIMSCV MS_RT_SCAN_START
public static final PSIMSCV MS_RT_RETENTION_TIME
public static final PSIMSCV MS_RT_RETENTION_TIME_LOCAL
public static final PSIMSCV MS_RT_RETENTION_TIME_NORMALIZED
public static final PSIMSCV MS_ION_INJECTION_TIME
public static final PSIMSCV MS_PRECURSOR_ISO_WND_TARGET
public static final PSIMSCV MS_PRECURSOR_ISO_WND_LO_OFFSET
public static final PSIMSCV MS_PRECURSOR_ISO_WND_LO_OBSOLETE
public static final PSIMSCV MS_PRECURSOR_ISO_WND_HI_OFFSET
public static final PSIMSCV MS_PRECURSOR_ISO_WND_HI_OBSOLETE
public static final PSIMSCV MS_PRECURSOR_INTENSITY
public static final PSIMSCV MS_PRECURSOR_MZ
public static final PSIMSCV MS_PRECURSOR_CHARGE
public static final PSIMSCV MS_DATA_ARRAY_MZ
public static final PSIMSCV MS_DATA_ARRAY_INTENSITY
public static final PSIMSCV MS_PRECISION_32
public static final PSIMSCV MS_PRECISION_64
public static final PSIMSCV MS_COMPRESSION_ZLIB
public static final PSIMSCV MS_COMPRESSION_NONE
public static final PSIMSCV MS_COMPRESSION_NUMPRESS_LIN_PRED
public static final PSIMSCV MS_COMPRESSION_NUMPRESS_POS_INT
public static final PSIMSCV MS_COMPRESSION_NUMPRESS_LOG_FLOAT
public static final PSIMSCV MS_COMPRESSION_NUMPRESS_LIN_PRED_ZLIB
public static final PSIMSCV MS_COMPRESSION_NUMPRESS_POS_INT_ZLIB
public static final PSIMSCV MS_COMPRESSION_NUMPRESS_LOG_FLOAT_ZLIB
public static final PSIMSCV MS_DISSOCIATION_METHOD
public static final PSIMSCV MS_PEAK_PICKING
public static final PSIMSCV MS_ACTIVATION_ENERGY_1
public static final PSIMSCV MS_ACTIVATION_ENERGY_2
public static final PSIMSCV MS_ACTIVATION_ENERGY_LO
public static final PSIMSCV MS_ACTIVATION_ENERGY_HI
public static final PSIMSCV MS_ACTIVATION_ENERGY_SUP
public static final PSIMSCV MS_INSTRUMENT
public static final PSIMSCV MS_INSTRUMENT_MODEL
public static final PSIMSCV MS_INSTRUMENT_VENDOR_OBSOLETE
public static final PSIMSCV MS_INSTRUMENT_SERIAL_NUMBER
public static final PSIMSCV MS_INSTRUMENT_COMPONENT_SOURCE
public static final PSIMSCV MS_INSTRUMENT_COMPONENT_ANALYZER
public static final PSIMSCV MS_INSTRUMENT_COMPONENT_DETECTOR
public static final PSIMSCV MS_INSTRUMENT_IONIZATION_TYPE
public static final PSIMSCV MS_HASH_SHA1
public static final PSIMSCV MS_HASH_MD5
public String accession
public String description
public String defaultStringRepresentation
public static Map<String,ActivationCVTerm> mapString2ActivationCVTerm
public static Map<javolution.text.CharArray,ActivationCVTerm> mapCharArr2ActivationCVTerm
public static Map<String,InstrumentModelCVTerm> MAP_INSTRUMENT_MODEL
public static Map<String,org.biojava.nbio.ontology.Term> MAP_NOT_MASS_SPECTRUM
public static Map<javolution.text.CharArray,org.biojava.nbio.ontology.Term> MAP_NOT_MASS_SPECTRUM_CHAR
public static org.biojava.nbio.ontology.Ontology ONTOLOGY
public static PSIMSCV[] values()
for (PSIMSCV c : PSIMSCV.values()) System.out.println(c);
public static PSIMSCV valueOf(String name)
name - the name of the enum constant to be returned.IllegalArgumentException - if this enum type has no constant with the specified nameNullPointerException - if the argument is nullpublic static PSIMSCV fromAccession(javolution.text.CharArray msAccession)
public static InstrumentModelCVTerm instrumentFromAccession(String msAccession)
public static String activationMethodFromAccession(String msAccession)
msAccession - string of the form "MS:00012323"public static String activationMethodFromAccession(javolution.text.CharArray msAccession)
msAccession - string of the form "MS:00012323"public static boolean isPeakPickingTerm(String msAccession)
msAccession - Copyright © 2017. All rights reserved.