Constant Field Values

Contents

• de.julielab.*

de.julielab.*

de.julielab.gene.candidateretrieval.Configuration

Modifier and Type	Constant Field	Value
public static final String	APPROX_SCORER_TYPE	"approx_scorer_type"
public static final String	EXACT_SCORER_TYPE	"exact_scorer_type"
public static final String	GENE_RECORD_INDEX	"gene_record_index"
public static final String	GENE_RECORD_ORIGINAL_NAMES_INDEX	"gene_record_original_names_index"
public static final String	NAME_CENTRIC_INDEX	"name_centric_index"
public static final String	PARAM_DISMAX_TIE_BREAKER	"dismax_tie_breaker"
public static final String	PARAM_SORT_CANDIDATES_BY_MATCHED_FIELD	"sort_candidates_by_matched_field"
public static final String	PARAM_USE_QUERY_FIELD_WEIGHTS	"use_query_field_weights"
public static final String	PREFIX_CANDIDATE_RETRIEVAL	"candidate_retrieval"
public static final String	SPELLING_INDEX	"spelling_index"
public static final String	USE_LUCENE_CANDIDATES_CACHE	"use_lucene_candidates_cache"

de.julielab.gene.candidateretrieval.LuceneCandidateRetrieval

Modifier and Type	Constant Field	Value
public static final int	JAROWINKLER_SCORER	3
public static final int	LEVENSHTEIN_SCORER	4
public static final String	LOGGER_NAME_CANDIDATES	"de.julielab.jules.ae.genemapper.candidates"
public static final int	LUCENE_MAX_HITS	20
public static final int	LUCENE_SCORER	10
public static final int	MAXENT_SCORER	2
public static final String	MAXENT_SCORER_MODEL	"/genemapper_jules_mallet.mod"
public static final String	NAME_PRIO_DELIMITER	"__"
public static final int	SIMPLE_SCORER	0
public static final boolean	TEST_MODE	false
public static final int	TFIDF	5
public static final int	TOKEN_JAROWINKLER_SCORER	1

de.julielab.gene.candidateretrieval.NameCentricRetrieval

Modifier and Type	Constant Field	Value
public static final int	JAROWINKLER_SCORER	3
public static final int	LEVENSHTEIN_SCORER	4
public static final String	LOGGER_NAME_CANDIDATES	"de.julielab.jules.ae.genemapper.candidates"
public static final int	LUCENE_MAX_HITS	20
public static final int	LUCENE_SCORER	10
public static final int	MAXENT_SCORER	2
public static final String	MAXENT_SCORER_MODEL	"/genemapper_jules_mallet.mod"
public static final String	NAME_PRIO_DELIMITER	"__"
public static final int	SIMPLE_SCORER	0
public static final int	TFIDF	5
public static final int	TOKEN_JAROWINKLER_SCORER	1

de.julielab.gene.candidateretrieval.SynonymIndexFieldNames

Modifier and Type	Constant Field	Value
public static final String	BIO_THESAURUS	"bio_thesaurus"
public static final String	CHROMOSOME	"chromosome"
public static final String	DESCRIPTION	"description"
public static final String	ECNUMBER	"ecnumber"
public static final String	ENTITY_TYPE	"entity_type"
public static final String	FILTERED	"filtered"
public static final String	FULL_NAMES	"full_names"
public static final String	GENERIF	"generif"
public static final String	GODESC	"godesc"
public static final String	ID_FIELD	"entry_id"
public static final String	ID_FIELD_LEGACY	"uniprot_id"
public static final String	INTERACTION	"interaction"
public static final String	LOOKUP_SYN_FIELD	"indexed_syn"
public static final String	LOOKUP_SYN_FIELD_EXACT	"indexed_syn_exact"
public static final String	LOOKUP_SYN_FIELD_NGRAMS	"indexed_syn_ngrams"
public static final String	LOOKUP_SYN_FIELD_STEMMED	"indexed_syn_stemmed"
public static final String	MAPLOCATION	"maplocation"
public static final String	ORIGINAL_NAME	"original_name"
public static final String	OTHER_DESIGNATIONS	"other_designations"
public static final String	PRIORITY	"priority"
public static final String	PROTEIN_NAMES	"protein_names"
public static final String	SOURCE	"source"
public static final String	STEMMED_NORMALIZED_NAME	"stemmed_normalized_name"
public static final String	SUMMARY	"summary"
public static final String	SYMBOL	"symbol"
public static final String	SYMBOL_FROM_NOMCENCLATURE	"symbol_from_nomenclature"
public static final String	SYNONYMS	"synonyms"
public static final String	TAX_ID_FIELD	"tax_id"
public static final String	UNIPROT_NAMES	"uniprot_names"
public static final String	VALUE_FAMILY_ID_PREFIX	"GENO\\:"
public static final String	VARIANT_NAME	"variant_name"
public static final String	XREFS	"xrefs"