Configuration (gene-candidate-retrieval 2.5.0 API)

java.lang.Object
- java.util.Dictionary<K,V>
- - java.util.Hashtable<Object,Object>
  - - java.util.Properties
    - - de.julielab.geneexpbase.configuration.Configuration
      - de.julielab.gene.candidateretrieval.Configuration

All Implemented Interfaces:

Serializable, Cloneable, Map<Object,Object>
```
public class Configuration
extends de.julielab.geneexpbase.configuration.Configuration
```
See Also:

Serialized Form

Field Summary

Fields
Modifier and Type	Field	Description
`static String`	`APPROX_SCORER_TYPE`
`static String`	`EXACT_SCORER_TYPE`
`static String`	`GENE_RECORD_INDEX`
`static String`	`GENE_RECORD_ORIGINAL_NAMES_INDEX`
`static String`	`NAME_CENTRIC_INDEX`
`static String`	`PARAM_DISMAX_TIE_BREAKER`
`static String`	`PARAM_SORT_CANDIDATES_BY_MATCHED_FIELD`
`static String`	`PARAM_USE_QUERY_FIELD_WEIGHTS`	Whether to use field weights in the Lucene query to the candidate index.
`static String`	`PREFIX_CANDIDATE_RETRIEVAL`
`static String`	`SPELLING_INDEX`
`static String`	`USE_LUCENE_CANDIDATES_CACHE`

Fields inherited from class de.julielab.geneexpbase.configuration.Configuration
CONCURRENCY_LEVEL, EHCACHE_CONFIG, GENE_ORTHOLOGS_PATH, KEY_CLASSIFIER, KEY_DATA_ALPHABET, KEY_MAX_RESULT_SCORE, KEY_MIN_RESULT_SCORE, KEY_MINMAX_SCALING_VALUES, KEY_RANKER, KEY_STANDARDIZATION_VALUES, KEY_TARGET_ALPHABET, ML, PARAM_ALGORITHM, PARAM_LTR_ALGORITHM, PARAM_LTR_K, PARAM_LTR_METRIC, PARAM_MINMAX_SCALE_FEATURES, PARAM_ML_USE_ALL_CORPUS_TRAINSPLITS, PARAM_MODEL, PARAM_PYTHON_EXECUTABLE, PARAM_SCALE_RESULT_SCORE, PARAM_STANDARDIZE_FEATURES, PARAM_SVM_C, PARAM_SVM_COEF0, PARAM_SVM_DEGREE, PARAM_SVM_GAMMA, PARAM_SVM_KERNEL_TYPE, PARAM_SVM_TYPE, PYTHON_PROCESS_LIMIT, TRAINING_INSTANCES, VALUE_LTR, VALUE_LUCENE, VALUE_MAXENT, VALUE_SVM, VALUE_TRANSFORMER

Fields inherited from class java.util.Properties
defaults

Constructor Summary

Constructors
Constructor	Description
`Configuration()`
`Configuration(de.julielab.geneexpbase.configuration.Configuration baseConfiguration)`
`Configuration(File configurationFile)`
`Configuration(String... parameters)`

Method Summary
- Methods inherited from class de.julielab.geneexpbase.configuration.Configuration
  dot, getBoolean, getDouble, getInteger, getLong
- Methods inherited from class java.util.Properties
  clear, clone, compute, computeIfAbsent, computeIfPresent, contains, containsKey, containsValue, elements, entrySet, equals, forEach, get, getOrDefault, getProperty, getProperty, hashCode, isEmpty, keys, keySet, list, list, load, load, loadFromXML, merge, propertyNames, put, putAll, putIfAbsent, rehash, remove, remove, replace, replace, replaceAll, save, setProperty, size, store, store, storeToXML, storeToXML, storeToXML, stringPropertyNames, toString, values
- Methods inherited from class java.lang.Object
  finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail
- PREFIX_CANDIDATE_RETRIEVAL
```
public static final String PREFIX_CANDIDATE_RETRIEVAL
```
  See Also:
  
  Constant Field Values
- USE_LUCENE_CANDIDATES_CACHE
```
public static final String USE_LUCENE_CANDIDATES_CACHE
```
  See Also:
  
  Constant Field Values
- PARAM_DISMAX_TIE_BREAKER
```
public static final String PARAM_DISMAX_TIE_BREAKER
```
  See Also:
  
  Constant Field Values
- EXACT_SCORER_TYPE
```
public static final String EXACT_SCORER_TYPE
```
  See Also:
  
  Constant Field Values
- APPROX_SCORER_TYPE
```
public static final String APPROX_SCORER_TYPE
```
  See Also:
  
  Constant Field Values
- SPELLING_INDEX
```
public static final String SPELLING_INDEX
```
  See Also:
  
  Constant Field Values
- GENE_RECORD_INDEX
```
public static final String GENE_RECORD_INDEX
```
  See Also:
  
  Constant Field Values
- NAME_CENTRIC_INDEX
```
public static final String NAME_CENTRIC_INDEX
```
  See Also:
  
  Constant Field Values
- GENE_RECORD_ORIGINAL_NAMES_INDEX
```
public static final String GENE_RECORD_ORIGINAL_NAMES_INDEX
```
  See Also:
  
  Constant Field Values
- PARAM_USE_QUERY_FIELD_WEIGHTS
```
public static final String PARAM_USE_QUERY_FIELD_WEIGHTS
```
  Whether to use field weights in the Lucene query to the candidate index.
  
  See Also:
  
  Constant Field Values
- PARAM_SORT_CANDIDATES_BY_MATCHED_FIELD
```
public static final String PARAM_SORT_CANDIDATES_BY_MATCHED_FIELD
```
  See Also:
  
  Constant Field Values

Constructor Detail

Configuration

public Configuration(de.julielab.geneexpbase.configuration.Configuration baseConfiguration)

Configuration
```
public Configuration()
```

Configuration

public Configuration(String... parameters)

Configuration

public Configuration(File configurationFile)
              throws IOException

Throws:: IOException