A C G I M N O P R S

A

addToJCas2(JCas, List<MedAttrAnnotator.Attribute>) - Method in class org.ohnlp.ae.medxn.MedAttrAnnotator

ALLOW_MULT_ANNO - Static variable in class org.ohnlp.ae.medxn.MedAttrAnnotator

C

contains(int, int, int, int) - Method in class org.ohnlp.ae.medxn.MedExtAnnotator

Returns 1 if 1 contains or equal to 2 Returns 2 if 2 contains or equal to 1 Returns 0 otherwise

G

getAttribute2(String) - Method in class org.ohnlp.ae.medxn.MedAttrAnnotator

Find and return medication attributes in text

getRegEx(InputStream) - Method in class org.ohnlp.ae.medxn.MedAttrAnnotator

Return regular expression patterns for med attributes

I

initialize(UimaContext) - Method in class org.ohnlp.ae.medxn.MedAttrAnnotator

initialize(UimaContext) - Method in class org.ohnlp.ae.medxn.MedExtAnnotator

isFalseMed1(String) - Method in class org.ohnlp.ae.medxn.MedExtAnnotator

Check if the given drug is true or not

M

MedAttrAnnotator - Class in org.ohnlp.ae.medxn

MedAttrAnnotator() - Constructor for class org.ohnlp.ae.medxn.MedAttrAnnotator

MedExtAnnotator - Class in org.ohnlp.ae.medxn

Associate medication with attributes.

MedExtAnnotator() - Constructor for class org.ohnlp.ae.medxn.MedExtAnnotator

MedNormAnnotator - Class in org.ohnlp.ae.medxn

Normalize medication description string same as the RxNorm standard

MedNormAnnotator() - Constructor for class org.ohnlp.ae.medxn.MedNormAnnotator

N

normalizeDrug(Medication, FSArray) - Method in class org.ohnlp.ae.medxn.MedNormAnnotator

Return a normalized form of RxNorm for med eg) For a given medication information "Fluoxetine [Prozac] 4 MG/ML Oral Solution" Return "fluoxetine4 mg/mloral solutionprozac"

O

org.ohnlp.ae.medxn - package org.ohnlp.ae.medxn

P

process(JCas) - Method in class org.ohnlp.ae.medxn.MedAttrAnnotator

process(JCas) - Method in class org.ohnlp.ae.medxn.MedExtAnnotator

process(JCas) - Method in class org.ohnlp.ae.medxn.MedNormAnnotator

R

REGEX_FILE - Static variable in class org.ohnlp.ae.medxn.MedAttrAnnotator

removeOverlap(List<MedAttrAnnotator.Attribute>) - Method in class org.ohnlp.ae.medxn.MedAttrAnnotator

Remove duplicates or take a longer attribute if subsumed and return the updated list of Attribute

S

SENT_WINDOW_SPAN - Static variable in class org.ohnlp.ae.medxn.MedExtAnnotator

SENT_WINDOW_SPAN_DUR - Static variable in class org.ohnlp.ae.medxn.MedExtAnnotator

setWindow(JCas, Medication, int, int, int) - Method in class org.ohnlp.ae.medxn.MedExtAnnotator

NOTE THAT THIS IS SPECIFIC FOR MAYO DATA return the offsets: begin of the given drug and the smaller of 1) the end of +2 sentences or 2) begin of the next drug Mayo specific: "BUT if there is newline and it does not start with Instruction or Indication, the end becomes newline"

A C G I M N O P R S