Index (JCoRe MedXN 2.6.1 API)

A

addToJCas2(JCas, List<MedAttrAnnotator.Attribute>) - Method in class org.ohnlp.ae.medxn.MedAttrAnnotator
ALLOW_MULT_ANNO - Static variable in class org.ohnlp.ae.medxn.MedAttrAnnotator

contains(int, int, int, int) - Method in class org.ohnlp.ae.medxn.MedExtAnnotator: Returns 1 if 1 contains or equal to 2 Returns 2 if 2 contains or equal to 1 Returns 0 otherwise

getAttribute2(String) - Method in class org.ohnlp.ae.medxn.MedAttrAnnotator: Find and return medication attributes in text
getRegEx(InputStream) - Method in class org.ohnlp.ae.medxn.MedAttrAnnotator: Return regular expression patterns for med attributes

initialize(UimaContext) - Method in class org.ohnlp.ae.medxn.MedAttrAnnotator
initialize(UimaContext) - Method in class org.ohnlp.ae.medxn.MedExtAnnotator
isFalseMed1(String) - Method in class org.ohnlp.ae.medxn.MedExtAnnotator: Check if the given drug is true or not

MedAttrAnnotator - Class in org.ohnlp.ae.medxn
MedAttrAnnotator() - Constructor for class org.ohnlp.ae.medxn.MedAttrAnnotator
MedExtAnnotator - Class in org.ohnlp.ae.medxn: Associate medication with attributes.
MedExtAnnotator() - Constructor for class org.ohnlp.ae.medxn.MedExtAnnotator
MedNormAnnotator - Class in org.ohnlp.ae.medxn: Normalize medication description string same as the RxNorm standard
MedNormAnnotator() - Constructor for class org.ohnlp.ae.medxn.MedNormAnnotator

normalizeDrug(Medication, FSArray) - Method in class org.ohnlp.ae.medxn.MedNormAnnotator: Return a normalized form of RxNorm for med eg) For a given medication information "Fluoxetine [Prozac] 4 MG/ML Oral Solution" Return "fluoxetine4 mg/mloral solutionprozac"

REGEX_FILE - Static variable in class org.ohnlp.ae.medxn.MedAttrAnnotator
removeOverlap(List<MedAttrAnnotator.Attribute>) - Method in class org.ohnlp.ae.medxn.MedAttrAnnotator: Remove duplicates or take a longer attribute if subsumed and return the updated list of Attribute

SENT_WINDOW_SPAN - Static variable in class org.ohnlp.ae.medxn.MedExtAnnotator
SENT_WINDOW_SPAN_DUR - Static variable in class org.ohnlp.ae.medxn.MedExtAnnotator
setWindow(JCas, Medication, int, int, int) - Method in class org.ohnlp.ae.medxn.MedExtAnnotator: NOTE THAT THIS IS SPECIFIC FOR MAYO DATA return the offsets: begin of the given drug and the smaller of 1) the end of +2 sentences or 2) begin of the next drug Mayo specific: "BUT if there is newline and it does not start with Instruction or Indication, the end becomes newline"