Package GNormPluslib

Class GN

java.lang.Object

GNormPluslib.GN

public class GN
extends Object

Field Summary

Fields

Modifier and Type	Field	Description
static HashMap<String,String>	MatchedTokens_hash

Constructor Summary

Constructors

Constructor	Description
GN(GNPProcessingData data)

Method Summary

Modifier and Type	Method	Description
void	ChromosomeRecognition(String Filename, String FilenameBioC)
void	GeneIDRecognition(String Filename, String FilenameBioC)
void	GeneNormalization(String Filename, String FilenameBioC, boolean GeneIDMatch)
void	PreProcessing4GN(String Filename, String FilenameBioC)
ArrayList<String>	SearchGeneIDLocation(String Doc)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

MatchedTokens_hash

public static HashMap<String,String> MatchedTokens_hash

Constructor Detail

GN

public GN(GNPProcessingData data)

Method Detail

PreProcessing4GN

public void PreProcessing4GN(String Filename,
                             String FilenameBioC)
                      throws IOException,
                             XMLStreamException

Throws:

IOException

XMLStreamException

ChromosomeRecognition

public void ChromosomeRecognition(String Filename,
                                  String FilenameBioC)
                           throws IOException,
                                  XMLStreamException

Throws:

IOException

XMLStreamException

GeneNormalization

public void GeneNormalization(String Filename,
                              String FilenameBioC,
                              boolean GeneIDMatch)
                       throws IOException,
                              XMLStreamException

Throws:

IOException

XMLStreamException

SearchGeneIDLocation

public ArrayList<String> SearchGeneIDLocation(String Doc)

GeneIDRecognition

public void GeneIDRecognition(String Filename,
                              String FilenameBioC)
                       throws IOException,
                              XMLStreamException

Throws:

IOException

XMLStreamException