ontologizer.io.annotation

Class AffyParser

java.lang.Object

ontologizer.io.annotation.AffyParser

public class AffyParser
extends Object

Parser of affymetrix annotation files. Unsupported and unmaintained.

Author:

Sebastian Bauer

Constructor Summary

Constructors

Constructor and Description
AffyParser()

Method Summary

Modifier and Type	Method and Description
ArrayList<Association>	getAssociations()
HashMap<ByteString,ByteString>	getSynonym2Symbol()
void	parse(IParserInput input, byte[] head, HashSet<ByteString> names, TermMap terms, IAssociationParserProgress progress)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AffyParser

public AffyParser()

Method Detail

parse

public void parse(IParserInput input,
                  byte[] head,
                  HashSet<ByteString> names,
                  TermMap terms,
                  IAssociationParserProgress progress)
           throws IOException

Throws:

IOException

getAssociations

public ArrayList<Association> getAssociations()

getSynonym2Symbol

public HashMap<ByteString,ByteString> getSynonym2Symbol()