A B C D E F G H I K L M N O P Q R S T U V X

A

a - Variable in class edu.jas.gb.GroebnerBaseDistHybridMPITest

a - Variable in class edu.jas.gb.GroebnerBaseDistMPITest

ackTag - Static variable in class edu.jas.gb.GroebnerBaseDistributedHybridMPI

Message tag for acknowledgments.

ackTag - Static variable in class edu.jas.gb.HybridReducerClientMPI

Message tag for acknowledgments.

ackTag - Static variable in class edu.jas.gb.HybridReducerReceiverMPI

Message tag for acknowledgments.

B

b - Variable in class edu.jas.gb.GroebnerBaseDistHybridMPITest

b - Variable in class edu.jas.gb.GroebnerBaseDistMPITest

bbdist - Variable in class edu.jas.gb.GroebnerBaseDistHybridMPITest

bbdist - Variable in class edu.jas.gb.GroebnerBaseDistMPITest

bbdists - Variable in class edu.jas.gb.GroebnerBaseDistHybridMPITest

bbdists - Variable in class edu.jas.gb.GroebnerBaseDistMPITest

bbseq - Variable in class edu.jas.gb.GroebnerBaseDistHybridMPITest

bbseq - Variable in class edu.jas.gb.GroebnerBaseDistMPITest

C

c - Variable in class edu.jas.gb.GroebnerBaseDistHybridMPITest

c - Variable in class edu.jas.gb.GroebnerBaseDistMPITest

CHANTAG - Static variable in class edu.jas.util.MPIChannel

clear() - Method in class edu.jas.util.DistHashTableMPI

Clear the List.

clientPart(int) - Method in class edu.jas.gb.GroebnerBaseDistributedHybridMPI

GB distributed client.

clientPart(int) - Method in class edu.jas.gb.GroebnerBaseDistributedMPI

GB distributed client.

close() - Method in class edu.jas.util.MPIChannel

Closes the channel.

cmdline - Static variable in class edu.jas.kern.MPIEngine

Command line arguments.

cmdline - Static variable in class edu.jas.kern.MPIEngineTest

containsKey(Object) - Method in class edu.jas.util.DistHashTableMPI

Contains key.

containsValue(Object) - Method in class edu.jas.util.DistHashTableMPI

Contains value.

D

d - Variable in class edu.jas.gb.GroebnerBaseDistHybridMPITest

d - Variable in class edu.jas.gb.GroebnerBaseDistMPITest

debug - Variable in class edu.jas.gb.GroebnerBaseDistributedHybridMPI

debug - Variable in class edu.jas.gb.HybridReducerClientMPI

debug - Variable in class edu.jas.gb.HybridReducerReceiverMPI

debug - Variable in class edu.jas.gb.HybridReducerServerMPI

DEFAULT_THREADS - Static variable in class edu.jas.gb.GroebnerBaseDistributedHybridMPI

Default number of threads.

DEFAULT_THREADS - Static variable in class edu.jas.gb.GroebnerBaseDistributedMPI

Default number of threads.

DEFAULT_THREADS_PER_NODE - Static variable in class edu.jas.gb.GroebnerBaseDistributedHybridMPI

Default number of threads per compute node.

DHTMPIListener<K,V> - Class in edu.jas.util

Thread to comunicate with the other DHT lists.

DHTMPIListener(Comm, SocketChannel[], SortedMap<K, V>) - Constructor for class edu.jas.util.DHTMPIListener

Constructor.

DHTTAG - Static variable in class edu.jas.util.DistHashTableMPI

Message tag for DHT communicaton.

DistHashTableMPI<K,V> - Class in edu.jas.util

Distributed version of a HashTable using MPI.

DistHashTableMPI() - Constructor for class edu.jas.util.DistHashTableMPI

DistHashTableMPI.

DistHashTableMPI(String[]) - Constructor for class edu.jas.util.DistHashTableMPI

DistHashTableMPI.

DistHashTableMPI(Comm) - Constructor for class edu.jas.util.DistHashTableMPI

DistHashTableMPI.

DistHashTableMPITest - Class in edu.jas.util

DistHashTableMPI test with JUnit.

DistHashTableMPITest(String) - Constructor for class edu.jas.util.DistHashTableMPITest

Constructs a DistHashTableMPITest object.

doCheck - Static variable in class edu.jas.application.RunMPIGB

Check result GB if it is a GB.

E

e - Variable in class edu.jas.gb.GroebnerBaseDistHybridMPITest

e - Variable in class edu.jas.gb.GroebnerBaseDistMPITest

edu.jas.application - package edu.jas.application

edu.jas.gb - package edu.jas.gb

edu.jas.kern - package edu.jas.kern

edu.jas.util - package edu.jas.util

el - Variable in class edu.jas.gb.GroebnerBaseDistHybridMPITest

el - Variable in class edu.jas.gb.GroebnerBaseDistMPITest

engine - Static variable in class edu.jas.gb.GroebnerBaseDistHybridMPITest

engine - Static variable in class edu.jas.gb.GroebnerBaseDistMPITest

engine - Variable in class edu.jas.gb.GroebnerBaseDistributedHybridMPI

engine - Variable in class edu.jas.gb.GroebnerBaseDistributedMPI

engine - Static variable in class edu.jas.kern.MPIEngineTest

engine - Variable in class edu.jas.util.DistHashTableMPI

engine - Static variable in class edu.jas.util.DistHashTableMPITest

entrySet() - Method in class edu.jas.util.DistHashTableMPI

Get the entries as Set.

equals(Object) - Method in class edu.jas.util.DistHashTableMPI

Equals.

F

F - Variable in class edu.jas.gb.GroebnerBaseDistHybridMPITest

F - Variable in class edu.jas.gb.GroebnerBaseDistMPITest

fac - Variable in class edu.jas.gb.GroebnerBaseDistHybridMPITest

fac - Variable in class edu.jas.gb.GroebnerBaseDistMPITest

G

G - Variable in class edu.jas.gb.GroebnerBaseDistHybridMPITest

G - Variable in class edu.jas.gb.GroebnerBaseDistMPITest

GB(int, List<GenPolynomial<C>>) - Method in class edu.jas.gb.GroebnerBaseDistributedHybridMPI

Distributed Groebner base.

GB(int, List<GenPolynomial<C>>) - Method in class edu.jas.gb.GroebnerBaseDistributedMPI

Distributed Groebner base.

GBmaster(int, List<GenPolynomial<C>>) - Method in class edu.jas.gb.GroebnerBaseDistributedHybridMPI

Distributed hybrid Groebner base.

GBmaster(int, List<GenPolynomial<C>>) - Method in class edu.jas.gb.GroebnerBaseDistributedMPI

Distributed Groebner base, part for MPI master.

get(Object) - Method in class edu.jas.util.DistHashTableMPI

Get value under key from DHT.

getCommunicator() - Static method in class edu.jas.kern.MPIEngine

Get the MPI communicator.

getCommunicator(String[]) - Static method in class edu.jas.kern.MPIEngine

Get the MPI communicator.

getEngine() - Method in class edu.jas.util.MPIChannel

Get the MPI engine.

getList() - Method in class edu.jas.util.DistHashTableMPI

Get the internal sorted map.

getNF() - Method in class edu.jas.gb.MiMPIReducerServer

getNF.

getValueList() - Method in class edu.jas.util.DistHashTableMPI

Get the internal list, convert from Collection.

getWait(K) - Method in class edu.jas.util.DistHashTableMPI

Get value under key from DHT.

GroebnerBaseDistHybridMPITest - Class in edu.jas.gb

Distributed GroebnerBase MPI tests with JUnit.

GroebnerBaseDistHybridMPITest(String) - Constructor for class edu.jas.gb.GroebnerBaseDistHybridMPITest

Constructs a GroebnerBaseDistHybridMPITest object.

GroebnerBaseDistMPITest - Class in edu.jas.gb

Distributed GroebnerBase MPI tests with JUnit.

GroebnerBaseDistMPITest(String) - Constructor for class edu.jas.gb.GroebnerBaseDistMPITest

Constructs a GroebnerBaseDistMPITest object.

GroebnerBaseDistributedHybridMPI<C extends edu.jas.structure.RingElem<C>> - Class in edu.jas.gb

Groebner Base distributed hybrid algorithm with MPI.

GroebnerBaseDistributedHybridMPI() - Constructor for class edu.jas.gb.GroebnerBaseDistributedHybridMPI

Constructor.

GroebnerBaseDistributedHybridMPI(int) - Constructor for class edu.jas.gb.GroebnerBaseDistributedHybridMPI

Constructor.

GroebnerBaseDistributedHybridMPI(int, int) - Constructor for class edu.jas.gb.GroebnerBaseDistributedHybridMPI

Constructor.

GroebnerBaseDistributedHybridMPI(int, ThreadPool) - Constructor for class edu.jas.gb.GroebnerBaseDistributedHybridMPI

Constructor.

GroebnerBaseDistributedHybridMPI(int, int, PairList<C>) - Constructor for class edu.jas.gb.GroebnerBaseDistributedHybridMPI

Constructor.

GroebnerBaseDistributedHybridMPI(int, int, ThreadPool) - Constructor for class edu.jas.gb.GroebnerBaseDistributedHybridMPI

Constructor.

GroebnerBaseDistributedHybridMPI(int, int, ThreadPool, PairList<C>) - Constructor for class edu.jas.gb.GroebnerBaseDistributedHybridMPI

Constructor.

GroebnerBaseDistributedMPI<C extends edu.jas.structure.RingElem<C>> - Class in edu.jas.gb

Groebner Base distributed algorithm with MPI.

GroebnerBaseDistributedMPI() - Constructor for class edu.jas.gb.GroebnerBaseDistributedMPI

Constructor.

GroebnerBaseDistributedMPI(int) - Constructor for class edu.jas.gb.GroebnerBaseDistributedMPI

Constructor.

GroebnerBaseDistributedMPI(int, ThreadPool) - Constructor for class edu.jas.gb.GroebnerBaseDistributedMPI

Constructor.

GroebnerBaseDistributedMPI(int, PairList<C>) - Constructor for class edu.jas.gb.GroebnerBaseDistributedMPI

Constructor.

GroebnerBaseDistributedMPI(int, ThreadPool, PairList<C>) - Constructor for class edu.jas.gb.GroebnerBaseDistributedMPI

Constructor.

H

hashCode() - Method in class edu.jas.util.DistHashTableMPI

Hash code.

host - Variable in class edu.jas.gb.GroebnerBaseDistHybridMPITest

host - Variable in class edu.jas.gb.GroebnerBaseDistMPITest

hostNames - Static variable in class edu.jas.kern.MPIEngine

Hostnames of MPI partners.

hostSuf - Static variable in class edu.jas.kern.MPIEngine

Hostname suffix.

HybridReducerClientMPI<C extends edu.jas.structure.RingElem<C>> - Class in edu.jas.gb

Distributed clients reducing worker threads.

HybridReducerClientMPI(MPIChannel, DistHashTableMPI<Integer, GenPolynomial<C>>) - Constructor for class edu.jas.gb.HybridReducerClientMPI

Constructor.

HybridReducerReceiverMPI<C extends edu.jas.structure.RingElem<C>> - Class in edu.jas.gb

Distributed server receiving worker thread.

HybridReducerReceiverMPI(int, Terminator, AtomicInteger, MPIChannel, DistHashTableMPI<Integer, GenPolynomial<C>>, PairList<C>) - Constructor for class edu.jas.gb.HybridReducerReceiverMPI

Constructor.

HybridReducerServerMPI<C extends edu.jas.structure.RingElem<C>> - Class in edu.jas.gb

Distributed server reducing worker proxy threads.

HybridReducerServerMPI(int, int, Terminator, MPIChannel, DistHashTableMPI<Integer, GenPolynomial<C>>, PairList<C>) - Constructor for class edu.jas.gb.HybridReducerServerMPI

Constructor.

I

init() - Method in class edu.jas.util.DistHashTableMPI

Initialize and start the list thread.

isDone() - Method in class edu.jas.util.DHTMPIListener

Test if done.

isEmpty() - Method in class edu.jas.util.DistHashTableMPI

Is the List empty?

isRunning() - Static method in class edu.jas.kern.MPIEngine

Test if a pool is running.

iterator() - Method in class edu.jas.util.DistHashTableMPI

List key iterator.

K

keySet() - Method in class edu.jas.util.DistHashTableMPI

Get the keys as set.

kl - Variable in class edu.jas.gb.GroebnerBaseDistHybridMPITest

kl - Variable in class edu.jas.gb.GroebnerBaseDistMPITest

L

L - Variable in class edu.jas.gb.GroebnerBaseDistHybridMPITest

L - Variable in class edu.jas.gb.GroebnerBaseDistMPITest

listener - Variable in class edu.jas.util.DistHashTableMPI

ll - Variable in class edu.jas.gb.GroebnerBaseDistHybridMPITest

ll - Variable in class edu.jas.gb.GroebnerBaseDistMPITest

M

main(String[]) - Static method in class edu.jas.application.RunMPIGB

main method to be called from commandline
Usage: RunMPIGB [seq|par(+)|dist(+)|disthyb|cli] <file> #procs/#threadsPerNode [machinefile]

main(String[]) - Static method in class edu.jas.gb.GroebnerBaseDistHybridMPITest

main

main(String[]) - Static method in class edu.jas.gb.GroebnerBaseDistMPITest

main

main(String[]) - Static method in class edu.jas.kern.MPIEngineTest

main

main(String[]) - Static method in class edu.jas.util.DistHashTableMPITest

main.

MiMPIReducerServer<C extends edu.jas.structure.RingElem<C>> - Class in edu.jas.gb

Distributed server reducing worker threads for minimal GB Not jet distributed but threaded.

MiMPIReducerServer(List<GenPolynomial<C>>, GenPolynomial<C>) - Constructor for class edu.jas.gb.MiMPIReducerServer

Constructor.

minimalGB(List<GenPolynomial<C>>) - Method in class edu.jas.gb.GroebnerBaseDistributedHybridMPI

Minimal ordered groebner basis.

minimalGB(List<GenPolynomial<C>>) - Method in class edu.jas.gb.GroebnerBaseDistributedMPI

Minimal ordered groebner basis.

MPIChannel - Class in edu.jas.util

MPIChannel provides a communication channel for Java objects using MPI or TCP/IP to a given rank.

MPIChannel(Comm, int) - Constructor for class edu.jas.util.MPIChannel

Constructs a MPI channel on the given MPI engine.

MPIChannel(Comm, int, int) - Constructor for class edu.jas.util.MPIChannel

Constructs a MPI channel on the given MPI engine.

mpiComm - Static variable in class edu.jas.kern.MPIEngine

MPI communicator engine.

MPIEngine - Class in edu.jas.kern

MPI engine, provides global MPI service.

MPIEngineTest - Class in edu.jas.kern

MPIEngine tests with JUnit.

MPIEngineTest(String) - Constructor for class edu.jas.kern.MPIEngineTest

Constructs a MPIEngineTest object.

MPIReducerClient<C extends edu.jas.structure.RingElem<C>> - Class in edu.jas.gb

Distributed clients reducing worker threads.

MPIReducerClient(MPIChannel, DistHashTableMPI<Integer, GenPolynomial<C>>) - Constructor for class edu.jas.gb.MPIReducerClient

Constructor.

MPIReducerServer<C extends edu.jas.structure.RingElem<C>> - Class in edu.jas.gb

Distributed server reducing worker threads.

MPIReducerServer(int, Terminator, MPIChannel, DistHashTableMPI<Integer, GenPolynomial<C>>, PairList<C>) - Constructor for class edu.jas.gb.MPIReducerServer

Constructor.

mpjBug - Variable in class edu.jas.gb.GroebnerBaseDistHybridMPITest

mpjBug - Variable in class edu.jas.gb.GroebnerBaseDistMPITest

N

N_CPUS - Static variable in class edu.jas.kern.MPIEngine

Number of processors.

N_THREADS - Static variable in class edu.jas.kern.MPIEngine

NO_MPI - Static variable in class edu.jas.kern.MPIEngine

Flag for MPI usage.

O

onlyOnetestDistributedGBase() - Method in class edu.jas.gb.GroebnerBaseDistHybridMPITest

Test distributed GBase.

P

pairTag - Static variable in class edu.jas.gb.GroebnerBaseDistributedHybridMPI

Message tag for pairs.

pairTag - Static variable in class edu.jas.gb.HybridReducerClientMPI

Message tag for pairs.

pairTag - Static variable in class edu.jas.gb.HybridReducerServerMPI

Message tag for pairs.

pool - Variable in class edu.jas.gb.GroebnerBaseDistributedHybridMPI

Pool of threads to use.

pool - Variable in class edu.jas.gb.GroebnerBaseDistributedMPI

port - Variable in class edu.jas.gb.GroebnerBaseDistHybridMPITest

port - Variable in class edu.jas.gb.GroebnerBaseDistMPITest

put(K, V) - Method in class edu.jas.util.DistHashTableMPI

Put object to the distributed hash table.

putWait(K, V) - Method in class edu.jas.util.DistHashTableMPI

Put object to the distributed hash table.

Q

q - Variable in class edu.jas.gb.GroebnerBaseDistHybridMPITest

q - Variable in class edu.jas.gb.GroebnerBaseDistMPITest

R

rank - Variable in class edu.jas.gb.HybridReducerReceiverMPI

rank - Variable in class edu.jas.gb.HybridReducerServerMPI

rank - Variable in class edu.jas.gb.MPIReducerServer

receive() - Method in class edu.jas.util.MPIChannel

Receives an object.

receive(int) - Method in class edu.jas.util.MPIChannel

Receives an object.

resultTag - Static variable in class edu.jas.gb.GroebnerBaseDistributedHybridMPI

Message tag for results.

resultTag - Static variable in class edu.jas.gb.HybridReducerClientMPI

Message tag for results.

resultTag - Static variable in class edu.jas.gb.HybridReducerReceiverMPI

Message tag for results.

rl - Variable in class edu.jas.gb.GroebnerBaseDistHybridMPITest

rl - Variable in class edu.jas.gb.GroebnerBaseDistMPITest

run() - Method in class edu.jas.gb.HybridReducerClientMPI

Work loop.

run() - Method in class edu.jas.gb.HybridReducerReceiverMPI

Work loop.

run() - Method in class edu.jas.gb.HybridReducerServerMPI

Work loop.

run() - Method in class edu.jas.gb.MiMPIReducerServer

Main run method.

run() - Method in class edu.jas.gb.MPIReducerClient

Main run method.

run() - Method in class edu.jas.gb.MPIReducerServer

Main method.

run() - Method in class edu.jas.util.DHTMPIListener

run.

runHybridMpi(PolynomialList, int, int, String, int, boolean) - Static method in class edu.jas.application.RunMPIGB

runMpi(PolynomialList, int, String, int, boolean) - Static method in class edu.jas.application.RunMPIGB

RunMPIGB - Class in edu.jas.application

Simple setup to run a GB example in MPI environment.

RunMPIGB() - Constructor for class edu.jas.application.RunMPIGB

S

send(Object) - Method in class edu.jas.util.MPIChannel

Sends an object.

send(int, Object) - Method in class edu.jas.util.MPIChannel

Sends an object.

send(int, Object, int) - Method in class edu.jas.util.MPIChannel

Sends an object.

setCommandLine(String[]) - Static method in class edu.jas.kern.MPIEngine

Set the commandline.

setDone() - Method in class edu.jas.util.DHTMPIListener

Set to done status.

setMPI() - Static method in class edu.jas.kern.MPIEngine

Set MPI usage.

setNoMPI() - Static method in class edu.jas.kern.MPIEngine

Set no MPI usage.

setUp() - Method in class edu.jas.gb.GroebnerBaseDistHybridMPITest

setUp() - Method in class edu.jas.gb.GroebnerBaseDistMPITest

setUp() - Method in class edu.jas.kern.MPIEngineTest

setUp() - Method in class edu.jas.util.DistHashTableMPITest

size() - Method in class edu.jas.util.DistHashTableMPI

Size of the (local) list.

suite() - Static method in class edu.jas.gb.GroebnerBaseDistHybridMPITest

suite.

suite() - Static method in class edu.jas.gb.GroebnerBaseDistMPITest

suite.

suite() - Static method in class edu.jas.kern.MPIEngineTest

suite.

suite() - Static method in class edu.jas.util.DistHashTableMPITest

suite.

T

TAG - Static variable in class edu.jas.kern.MPIEngine

MPI engine base tag number.

tearDown() - Method in class edu.jas.gb.GroebnerBaseDistHybridMPITest

tearDown() - Method in class edu.jas.gb.GroebnerBaseDistMPITest

tearDown() - Method in class edu.jas.kern.MPIEngineTest

tearDown() - Method in class edu.jas.util.DistHashTableMPITest

terminate() - Method in class edu.jas.gb.GroebnerBaseDistributedHybridMPI

Cleanup and terminate.

terminate() - Method in class edu.jas.gb.GroebnerBaseDistributedMPI

Cleanup and terminate ThreadPool.

terminate() - Method in class edu.jas.gb.HybridReducerReceiverMPI

Terminate.

terminate() - Static method in class edu.jas.kern.MPIEngine

Stop execution.

terminate() - Method in class edu.jas.util.DistHashTableMPI

Terminate the list thread.

testCommunication() - Method in class edu.jas.kern.MPIEngineTest

Test communication.

testDistHashTable3() - Method in class edu.jas.util.DistHashTableMPITest

Tests if the two created DistHashTables have #n objects as content.

testDistributedGBase() - Method in class edu.jas.gb.GroebnerBaseDistMPITest

Test distributed GBase.

testMPIEngine() - Method in class edu.jas.kern.MPIEngineTest

Test MPIEngine.

testTrinks7GBase() - Method in class edu.jas.gb.GroebnerBaseDistHybridMPITest

Test Trinks7 GBase.

testTrinks7GBase() - Method in class edu.jas.gb.GroebnerBaseDistMPITest

Test Trinks7 GBase.

theList - Variable in class edu.jas.util.DistHashTableMPI

threads - Variable in class edu.jas.gb.GroebnerBaseDistHybridMPITest

threads - Variable in class edu.jas.gb.GroebnerBaseDistMPITest

threads - Variable in class edu.jas.gb.GroebnerBaseDistributedHybridMPI

Number of threads to use.

threads - Variable in class edu.jas.gb.GroebnerBaseDistributedMPI

Number of threads to use.

threadsPerNode - Variable in class edu.jas.gb.GroebnerBaseDistHybridMPITest

threadsPerNode - Variable in class edu.jas.gb.GroebnerBaseDistributedHybridMPI

Number of threads per node to use.

toString() - Method in class edu.jas.util.MPIChannel

to string.

U

useTCP - Static variable in class edu.jas.util.DistHashTableMPI

Transport layer.

useTCP - Static variable in class edu.jas.util.MPIChannel

V

valueIterator() - Method in class edu.jas.util.DistHashTableMPI

List value iterator.

values() - Method in class edu.jas.util.DistHashTableMPI

Get the values as Collection.

X

xtestDistHashTable1() - Method in class edu.jas.util.DistHashTableMPITest

Tests create and terminate DistHashTableMPI.

xtestDistHashTable2() - Method in class edu.jas.util.DistHashTableMPITest

Tests if the created DistHashTable has #n objects as content.

A B C D E F G H I K L M N O P Q R S T U V X