- Absolute
- AbsoluteDifference
- AbstractCLIJ2Plugin
- AddImageAndScalar
- AddImages
- AddImagesWeighted
- AdjacencyMatrixToTouchMatrix
- AffineTransform
- AffineTransform2D
- AffineTransform3D
- ApplyVectorField2D
- ApplyVectorField3D
- ArgMaximumZProjection
- AutomaticThreshold
- AutoThresholderImageJ1
- AutoThresholderImageJ1.Method
- AverageDistanceOfNClosestPoints
- AverageDistanceOfNFarOffPoints
- AverageDistanceOfTouchingNeighbors
- BinaryAnd
- BinaryEdgeDetection
- BinaryFillHoles
- BinaryIntersection
- BinaryNot
- BinaryOr
- BinarySubtract
- BinaryUnion
- BinaryXOr
- Blur2D
- Blur3D
- Blur3DSliceBySlice
- BottomHatBox
- BottomHatSphere
- BoundingBox
- Byte1
- Byte1ToClearCLBufferConverter
- Byte2
- Byte2ToClearCLBufferConverter
- Byte3
- Byte3ToClearCLBufferConverter
- CenterOfMass
- CentroidsOfBackgroundAndLabels
- CentroidsOfLabels
- Char1
- Char1ToClearCLBufferConverter
- Char2
- Char2ToClearCLBufferConverter
- Char3
- Char3ToClearCLBufferConverter
- Clear
- ClearCLBufferToByte2Converter
- ClearCLBufferToByte3Converter
- ClearCLBufferToChar2Converter
- ClearCLBufferToChar3Converter
- ClearCLBufferToDouble2Converter
- ClearCLBufferToDouble3Converter
- ClearCLBufferToFloat2Converter
- ClearCLBufferToFloat3Converter
- CLIJ2
- CLIJ2MacroExtensions
- CLIJ2Ops
- CLIJLegacyMacroExtensions
- CLIJUtilities
- ClInfo
- CloseIndexGapsInLabelMap
- ClosingBox
- ClosingDiamond
- CombineHorizontally
- CombineVertically
- ConcatenateStacks
- ConnectedComponentsLabeling
- ConnectedComponentsLabelingBox
- ConnectedComponentsLabelingDiamond
- ConvertFloat
- ConvertUInt16
- ConvertUInt8
- Convolve
- Copy
- CopySlice
- CountNonZeroPixels
- CountNonZeroPixels2DSphere
- CountNonZeroPixelsSliceBySliceSphere
- CountNonZeroVoxels3DSphere
- CountTouchingNeighbors
- Create2D
- Create3D
- Crop2D
- Crop3D
- CustomOperation
- DepthColorProjection
- DetectLabelEdges
- DetectMaxima2DBox
- DetectMaxima3DBox
- DetectMaximaBox
- DetectMaximaSliceBySliceBox
- DetectMinima2DBox
- DetectMinima3DBox
- DetectMinimaBox
- DetectMinimaSliceBySliceBox
- DifferenceOfGaussian2D
- DifferenceOfGaussian3D
- DilateBox
- DilateBoxSliceBySlice
- DilateSphere
- DilateSphereSliceBySlice
- DistanceMap
- DistanceMatrixToMesh
- DivideImages
- Double1
- Double1ToClearCLBufferConverter
- Double2
- Double2ToClearCLBufferConverter
- Double3
- Double3ToClearCLBufferConverter
- Downsample2D
- Downsample3D
- DownsampleSliceBySliceHalfMedian
- DrawBox
- DrawLine
- DrawSphere
- EntropyBox
- Equal
- EqualConstant
- EqualizeMeanIntensitiesOfSlices
- ErodeBox
- ErodeBoxSliceBySlice
- ErodeSphere
- ErodeSphereSliceBySlice
- ExcludeLabels
- ExcludeLabelsOnEdges
- ExcludeLabelsOnSurface
- ExcludeLabelsSubSurface
- ExcludeLabelsWithValuesOutOfRange
- ExcludeLabelsWithValuesWithinRange
- Exponential
- ExtendLabelingViaVoronoi
- FallBackCLIJMacroPluginService
- FallBackCLIJMacroPluginServiceInitializer
- Flip2D
- Flip3D
- Float1
- Float1ToClearCLBufferConverter
- Float2
- Float2ToClearCLBufferConverter
- Float3
- Float3ToClearCLBufferConverter
- FloodFillDiamond
- GaussianBlur2D
- GaussianBlur3D
- GenerateBinaryOverlapMatrix
- GenerateDistanceMatrix
- GenerateJaccardIndexMatrix
- GenerateParametricImage
- GenerateParametricImageFromResultsTableColumn
- GenerateTouchCountMatrix
- GenerateTouchMatrix
- GetAutomaticThreshold
- GetBoundingBox
- GetCenterOfMass
- GetDimensions
- GetGPUProperties
- GetJaccardIndex
- GetMaximumOfAllPixels
- GetMeanOfAllPixels
- GetMeanOfMaskedPixels
- GetMeanSquaredError
- GetMinimumOfAllPixels
- GetSize
- GetSorensenDiceCoefficient
- GetSumOfAllPixels
- GetTimeTracing
- GPUProperties
- GradientX
- GradientY
- GradientZ
- Greater
- GreaterConstant
- GreaterOrEqual
- GreaterOrEqualConstant
- HasClassifiedInputOutput
- Help
- Histogram
- Image2DToResultsTable
- ImageToStack
- InvalidateKernelCache
- Invert
- JaccardIndex
- LabelCentroidsToPointList
- LabelledSpotsToPointList
- LabelSpots
- LabelToMask
- LabelVoronoiOctagon
- LaplaceBox
- LaplaceDiamond
- ListAvailableGPUs
- LocalThreshold
- Logarithm
- Mask
- MaskLabel
- MaskStackWithPlane
- MatrixEqual
- Maximum2DBox
- Maximum2DSphere
- Maximum3DBox
- Maximum3DSphere
- MaximumImageAndScalar
- MaximumImages
- MaximumOctagon
- MaximumOfAllPixels
- MaximumOfMaskedPixels
- MaximumOfTouchingNeighbors
- MaximumSliceBySliceSphere
- MaximumXProjection
- MaximumYProjection
- MaximumZProjection
- MaximumZProjectionBounded
- Mean2DBox
- Mean2DSphere
- Mean3DBox
- Mean3DSphere
- MeanClosestSpotDistance
- MeanOfAllPixels
- MeanOfMaskedPixels
- MeanOfPixelsAboveThreshold
- MeanOfTouchingNeighbors
- MeanSliceBySliceSphere
- MeanSquaredError
- MeanXProjection
- MeanYProjection
- MeanZProjection
- MeanZProjectionBounded
- Median2DBox
- Median2DSphere
- Median3DBox
- Median3DSphere
- MedianOfTouchingNeighbors
- MedianSliceBySliceBox
- MedianSliceBySliceSphere
- MedianZProjection
- Minimum2DBox
- Minimum2DSphere
- Minimum3DBox
- Minimum3DSphere
- MinimumDistanceOfTouchingNeighbors
- MinimumImageAndScalar
- MinimumImages
- MinimumOctagon
- MinimumOfAllPixels
- MinimumOfMaskedPixels
- MinimumOfTouchingNeighbors
- MinimumSliceBySliceSphere
- MinimumXProjection
- MinimumYProjection
- MinimumZProjection
- MinimumZProjectionBounded
- MinimumZProjectionThresholdedBounded
- MultiplyImageAndCoordinate
- MultiplyImageAndScalar
- MultiplyImages
- MultiplyImageStackWithScalars
- MultiplyMatrix
- MultiplyStackWithPlane
- NClosestDistances
- NClosestPoints
- NeighborsOfNeighbors
- NonzeroMaximumBox
- NonzeroMaximumDiamond
- NonzeroMinimumBox
- NonzeroMinimumDiamond
- NotEqual
- NotEqualConstant
- OnlyzeroOverwriteMaximumBox
- OnlyzeroOverwriteMaximumDiamond
- OpeningBox
- OpeningDiamond
- Paste2D
- Paste3D
- PointIndexListToMesh
- PointlistToLabelledSpots
- Power
- PowerImages
- ProcessableInTiles
- Pull
- PullAsROI
- PullBinary
- PullLabelsToROIList
- PullLabelsToROIManager
- PullString
- PullToCurrentSlice
- PullToCurrentSliceSelection
- PullToResultsTable
- PullToROIManager
- Push
- PushArray
- PushCurrentSelection
- PushCurrentSlice
- PushCurrentSliceSelection
- PushCurrentZStack
- PushResultsTable
- PushResultsTableColumn
- PushString
- ReduceStack
- Release
- ReplaceIntensities
- ReplaceIntensity
- ReplacePixelsIfZero
- ReportMemory
- Resample
- ResliceBottom
- ResliceLeft
- ResliceRadial
- ResliceRadialTop
- ResliceRight
- ResliceTop
- ResultsTableColumnToImage
- ResultsTableToImage2D
- Rotate2D
- Rotate3D
- RotateClockwise
- RotateCounterClockwise
- RotateLeft
- RotateRight
- SaveAsTIF
- Scale
- Scale2D
- Scale3D
- Set
- SetColumn
- SetImageBorders
- SetNonZeroPixelsToPixelIndex
- SetPlane
- SetRampX
- SetRampY
- SetRampZ
- SetRandom
- SetRow
- SetWhereXequalsY
- SetWhereXgreaterThanY
- SetWhereXsmallerThanY
- ShortestDistances
- Smaller
- SmallerConstant
- SmallerOrEqual
- SmallerOrEqualConstant
- Sobel
- SorensenDiceCoefficient
- SpotsToPointList
- SquaredDifference
- StandardDeviationOfAllPixels
- StandardDeviationOfMaskedPixels
- StandardDeviationOfTouchingNeighbors
- StandardDeviationZProjection
- StartTimeTracing
- StatisticsOfBackgroundAndLabelledPixels
- StatisticsOfImage
- StatisticsOfLabelledPixels
- StatisticsOfLabelledPixels.STATISTICS_ENTRY
- StopTimeTracing
- SubtractImageFromScalar
- SubtractImages
- SumImageSliceBySlice
- SumOfAllPixels
- SumXProjection
- SumYProjection
- SumZProjection
- Threshold
- ThresholdDefault
- ThresholdHuang
- ThresholdIJ_IsoData
- ThresholdIntermodes
- ThresholdIsoData
- ThresholdLi
- ThresholdMaxEntropy
- ThresholdMean
- ThresholdMinError
- ThresholdMinimum
- ThresholdMoments
- ThresholdOtsu
- ThresholdPercentile
- ThresholdRenyiEntropy
- ThresholdShanbhag
- ThresholdTriangle
- ThresholdYen
- TopHatBox
- TopHatSphere
- TouchMatrixToAdjacencyMatrix
- TouchMatrixToMesh
- Translate2D
- Translate3D
- TransposeXY
- TransposeXZ
- TransposeYZ
- UndefinedToZero
- VarianceOfAllPixels
- VarianceOfMaskedPixels
- VoronoiLabeling
- VoronoiOctagon
- Watershed
- WriteValuesToPositions