Deprecated API

Contents

• Classes
• Methods
• Constructors

Classes

Class	Description
net.haesleinhuepf.clij2.plugins.AffineTransform
net.haesleinhuepf.clij2.plugins.Blur2D
net.haesleinhuepf.clij2.plugins.Blur3D
net.haesleinhuepf.clij2.plugins.Blur3DSliceBySlice
net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabeling
net.haesleinhuepf.clij2.plugins.DetectMaximaBox
net.haesleinhuepf.clij2.plugins.DetectMinimaBox
net.haesleinhuepf.clij2.plugins.GetSize
net.haesleinhuepf.clij2.plugins.Image2DToResultsTable
net.haesleinhuepf.clij2.plugins.ResultsTableToImage2D
net.haesleinhuepf.clij2.plugins.RotateLeft
net.haesleinhuepf.clij2.plugins.RotateRight
net.haesleinhuepf.clij2.plugins.Scale

Methods

Method	Description
net.haesleinhuepf.clij2.CLIJ2.getClij()
net.haesleinhuepf.clij2.CLIJ2.setKeepReferences(boolean)
net.haesleinhuepf.clij2.CLIJ2Ops.averageDistanceOfClosestPoints(ClearCLBuffer, ClearCLBuffer, double)
net.haesleinhuepf.clij2.CLIJ2Ops.blur(ClearCLImageInterface, ClearCLImageInterface, double, double)
net.haesleinhuepf.clij2.CLIJ2Ops.blur2D(ClearCLImageInterface, ClearCLImageInterface, double, double)
net.haesleinhuepf.clij2.CLIJ2Ops.blur3D(ClearCLImageInterface, ClearCLImageInterface, double, double, double)
net.haesleinhuepf.clij2.CLIJ2Ops.connectedComponentsLabeling(ClearCLImageInterface, ClearCLImageInterface)
net.haesleinhuepf.clij2.CLIJ2Ops.countNonZeroPixelsLocally(ClearCLBuffer, ClearCLBuffer, double, double)
net.haesleinhuepf.clij2.CLIJ2Ops.countNonZeroPixelsLocallySliceBySlice(ClearCLBuffer, ClearCLBuffer, double, double)
net.haesleinhuepf.clij2.CLIJ2Ops.countNonZeroVoxelsLocally(ClearCLBuffer, ClearCLBuffer, double, double, double)
net.haesleinhuepf.clij2.CLIJ2Ops.detectMaximaBox(ClearCLImageInterface, ClearCLImageInterface, double)
net.haesleinhuepf.clij2.CLIJ2Ops.detectMinimaBox(ClearCLImageInterface, ClearCLImageInterface, double)
net.haesleinhuepf.clij2.CLIJ2Ops.downsample(ClearCLImageInterface, ClearCLImageInterface, double, double)
net.haesleinhuepf.clij2.CLIJ2Ops.downsample2D(ClearCLImageInterface, ClearCLImageInterface, double, double)
net.haesleinhuepf.clij2.CLIJ2Ops.downsample3D(ClearCLImageInterface, ClearCLImageInterface, double, double, double)
net.haesleinhuepf.clij2.CLIJ2Ops.fillHistogram(ClearCLBuffer, ClearCLBuffer, double, double)
net.haesleinhuepf.clij2.CLIJ2Ops.getSize(ClearCLBuffer)
net.haesleinhuepf.clij2.CLIJ2Ops.image2DToResultsTable(ClearCLBuffer, ResultsTable)
net.haesleinhuepf.clij2.CLIJ2Ops.maximumBox(ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel)
net.haesleinhuepf.clij2.CLIJ2Ops.maximumDiamond(ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel)
net.haesleinhuepf.clij2.CLIJ2Ops.minimumBox(ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel)
net.haesleinhuepf.clij2.CLIJ2Ops.minimumDiamond(ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel)
net.haesleinhuepf.clij2.CLIJ2Ops.multiplySliceBySliceWithScalars(ClearCLImageInterface, ClearCLImageInterface, float[])
net.haesleinhuepf.clij2.CLIJ2Ops.radialProjection(ClearCLBuffer, ClearCLBuffer, double)
net.haesleinhuepf.clij2.CLIJ2Ops.resample(ClearCLImageInterface, ClearCLImageInterface, double, double, double, boolean)
net.haesleinhuepf.clij2.CLIJ2Ops.resultsTableToImage2D(ClearCLBuffer, ResultsTable)
net.haesleinhuepf.clij2.CLIJ2Ops.rotateLeft(ClearCLImageInterface, ClearCLImageInterface)
net.haesleinhuepf.clij2.CLIJ2Ops.rotateRight(ClearCLImageInterface, ClearCLImageInterface)
net.haesleinhuepf.clij2.CLIJ2Ops.scale(ClearCLBuffer, ClearCLBuffer, double, double, double)
net.haesleinhuepf.clij2.CLIJ2Ops.shiftIntensitiesToCloseGaps(ClearCLBuffer, ClearCLBuffer)
net.haesleinhuepf.clij2.CLIJ2Ops.subtract(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface)
net.haesleinhuepf.clij2.CLIJ2Ops.sumPixels(ClearCLImageInterface)
net.haesleinhuepf.clij2.CLIJ2Ops.sumPixelsSliceByslice(ClearCLImageInterface)
net.haesleinhuepf.clij2.plugins.AffineTransform.affineTransform(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, AffineTransform2D)
net.haesleinhuepf.clij2.plugins.AverageDistanceOfNClosestPoints.averageDistanceOfClosestPoints(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer)
net.haesleinhuepf.clij2.plugins.Blur3DSliceBySlice.blur3DSliceBySlice(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float)
net.haesleinhuepf.clij2.plugins.CloseIndexGapsInLabelMap.shiftIntensitiesToCloseGaps(CLIJ2, ClearCLBuffer, ClearCLBuffer)
net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabeling.connectedComponentsLabeling(CLIJ2, ClearCLImageInterface, ClearCLImageInterface)
net.haesleinhuepf.clij2.plugins.CountNonZeroPixels2DSphere.countNonZeroPixelsLocally(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Integer)
net.haesleinhuepf.clij2.plugins.CountNonZeroPixelsSliceBySliceSphere.countNonZeroPixelsLocallySliceBySlice(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Integer)
net.haesleinhuepf.clij2.plugins.CountNonZeroVoxels3DSphere.countNonZeroVoxelsLocally(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Integer, Integer)
net.haesleinhuepf.clij2.plugins.DetectMaximaBox.detectMaximaBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer)
net.haesleinhuepf.clij2.plugins.DetectMinimaBox.detectMinimaBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer)
net.haesleinhuepf.clij2.plugins.Downsample2D.downsample(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float)
net.haesleinhuepf.clij2.plugins.Downsample2D.downsample2D(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float)
net.haesleinhuepf.clij2.plugins.Downsample3D.downsample(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float, Float)
net.haesleinhuepf.clij2.plugins.Downsample3D.downsample3D(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float, Float)
net.haesleinhuepf.clij2.plugins.GaussianBlur2D.blur(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float)
net.haesleinhuepf.clij2.plugins.GaussianBlur2D.blur2D(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float)
net.haesleinhuepf.clij2.plugins.GaussianBlur3D.blur(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float, Float)
net.haesleinhuepf.clij2.plugins.GaussianBlur3D.blur3D(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float, Float)
net.haesleinhuepf.clij2.plugins.GetSize.getSize(CLIJ2, ClearCLBuffer)
net.haesleinhuepf.clij2.plugins.Histogram.fillHistogram(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float, Float)
net.haesleinhuepf.clij2.plugins.Image2DToResultsTable.image2DToResultsTable(CLIJ2, ClearCLBuffer, ResultsTable)
net.haesleinhuepf.clij2.plugins.MaximumOctagon.maximumBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel)
net.haesleinhuepf.clij2.plugins.MaximumOctagon.maximumDiamond(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel)
net.haesleinhuepf.clij2.plugins.MinimumOctagon.minimumBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel)
net.haesleinhuepf.clij2.plugins.MinimumOctagon.minimumDiamond(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel)
net.haesleinhuepf.clij2.plugins.MultiplyImageStackWithScalars.multiplySliceBySliceWithScalars(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, float[])
net.haesleinhuepf.clij2.plugins.Resample.resample(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float, Float, Boolean)
net.haesleinhuepf.clij2.plugins.ResliceRadial.radialProjection(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float)
net.haesleinhuepf.clij2.plugins.ResultsTableToImage2D.resultsTableToImage2D(CLIJ2, ClearCLBuffer, ResultsTable)
net.haesleinhuepf.clij2.plugins.RotateClockwise.rotateRight(CLIJ2, ClearCLImageInterface, ClearCLImageInterface)
net.haesleinhuepf.clij2.plugins.RotateCounterClockwise.rotateLeft(CLIJ2, ClearCLImageInterface, ClearCLImageInterface)
net.haesleinhuepf.clij2.plugins.Scale.scale(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float, Float, Float)
net.haesleinhuepf.clij2.plugins.SubtractImages.subtract(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface)
net.haesleinhuepf.clij2.plugins.SumImageSliceBySlice.sumPixelsSliceByslice(CLIJ2, ClearCLImageInterface)
net.haesleinhuepf.clij2.plugins.SumOfAllPixels.sumPixels(CLIJ2, ClearCLImageInterface)

Constructors

Constructor	Description
net.haesleinhuepf.clij2.CLIJ2(CLIJ)