Index (clij2_ 2.3.0.6 API)

A B C D E F G H I J L M N O P R S T U V W Y _
All Classes All Packages

A

absolute(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the absolute value of every individual pixel x in a given image.
absolute(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.Absolute
Absolute - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf November 2019
Absolute() - Constructor for class net.haesleinhuepf.clij2.plugins.Absolute
absoluteDifference(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the absolute difference pixel by pixel between two images.
absoluteDifference(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.AbsoluteDifference
AbsoluteDifference - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf June 2020
AbsoluteDifference() - Constructor for class net.haesleinhuepf.clij2.plugins.AbsoluteDifference
AbstractCLIJ2Plugin - Class in net.haesleinhuepf.clij2
AbstractCLIJ2Plugin() - Constructor for class net.haesleinhuepf.clij2.AbstractCLIJ2Plugin
activateSizeIndependentKernelCompilation() - Method in class net.haesleinhuepf.clij2.CLIJ2
addImageAndScalar(ClearCLImageInterface, ClearCLImageInterface, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Adds a scalar value s to all pixels x of a given image X.
addImageAndScalar(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float) - Static method in class net.haesleinhuepf.clij2.plugins.AddImageAndScalar
AddImageAndScalar - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
AddImageAndScalar() - Constructor for class net.haesleinhuepf.clij2.plugins.AddImageAndScalar
addImages(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Calculates the sum of pairs of pixels x and y of two images X and Y.
addImages(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.AddImages
AddImages - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
AddImages() - Constructor for class net.haesleinhuepf.clij2.plugins.AddImages
addImagesWeighted(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Calculates the sum of pairs of pixels x and y from images X and Y weighted with factors a and b.
addImagesWeighted(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.AddImagesWeighted
AddImagesWeighted - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
AddImagesWeighted() - Constructor for class net.haesleinhuepf.clij2.plugins.AddImagesWeighted
adjacencyMatrixToTouchMatrix(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Converts a adjacency matrix in a touch matrix.
adjacencyMatrixToTouchMatrix(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.AdjacencyMatrixToTouchMatrix
AdjacencyMatrixToTouchMatrix - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
AdjacencyMatrixToTouchMatrix() - Constructor for class net.haesleinhuepf.clij2.plugins.AdjacencyMatrixToTouchMatrix
affineTransform(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, AffineTransform2D) - Method in class net.haesleinhuepf.clij2.plugins.AffineTransform: Deprecated.
affineTransform(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, AffineTransform3D) - Method in class net.haesleinhuepf.clij2.plugins.AffineTransform: Deprecated.
AffineTransform - Class in net.haesleinhuepf.clij2.plugins: Deprecated.
AffineTransform() - Constructor for class net.haesleinhuepf.clij2.plugins.AffineTransform: Deprecated.
affineTransform2D(ClearCLBuffer, ClearCLImageInterface, float[]) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Applies an affine transform to a 2D image.
affineTransform2D(ClearCLBuffer, ClearCLImageInterface, String) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Applies an affine transform to a 2D image.
affineTransform2D(ClearCLBuffer, ClearCLImageInterface, AffineTransform2D) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Applies an affine transform to a 2D image.
affineTransform2D(ClearCLImage, ClearCLImageInterface, float[]) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Applies an affine transform to a 2D image.
affineTransform2D(ClearCLImage, ClearCLImageInterface, AffineTransform2D) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Applies an affine transform to a 2D image.
affineTransform2D(CLIJ2, ClearCLBuffer, ClearCLImageInterface, float[]) - Static method in class net.haesleinhuepf.clij2.plugins.AffineTransform2D
affineTransform2D(CLIJ2, ClearCLBuffer, ClearCLImageInterface, String) - Static method in class net.haesleinhuepf.clij2.plugins.AffineTransform2D
affineTransform2D(CLIJ2, ClearCLBuffer, ClearCLImageInterface, AffineTransform2D) - Static method in class net.haesleinhuepf.clij2.plugins.AffineTransform2D
affineTransform2D(CLIJ2, ClearCLImage, ClearCLImageInterface, float[]) - Static method in class net.haesleinhuepf.clij2.plugins.AffineTransform2D
affineTransform2D(CLIJ2, ClearCLImage, ClearCLImageInterface, AffineTransform2D) - Static method in class net.haesleinhuepf.clij2.plugins.AffineTransform2D
AffineTransform2D - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2019
AffineTransform2D() - Constructor for class net.haesleinhuepf.clij2.plugins.AffineTransform2D
affineTransform3D(ClearCLBuffer, ClearCLImageInterface, float[]) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Applies an affine transform to a 3D image.
affineTransform3D(ClearCLBuffer, ClearCLImageInterface, String) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Applies an affine transform to a 3D image.
affineTransform3D(ClearCLBuffer, ClearCLImageInterface, AffineTransform3D) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Applies an affine transform to a 3D image.
affineTransform3D(ClearCLImage, ClearCLImageInterface, float[]) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Applies an affine transform to a 3D image.
affineTransform3D(ClearCLImage, ClearCLImageInterface, AffineTransform3D) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Applies an affine transform to a 3D image.
affineTransform3D(CLIJ2, ClearCLBuffer, ClearCLImageInterface, float[]) - Static method in class net.haesleinhuepf.clij2.plugins.AffineTransform3D
affineTransform3D(CLIJ2, ClearCLBuffer, ClearCLImageInterface, String) - Static method in class net.haesleinhuepf.clij2.plugins.AffineTransform3D
affineTransform3D(CLIJ2, ClearCLBuffer, ClearCLImageInterface, AffineTransform3D) - Static method in class net.haesleinhuepf.clij2.plugins.AffineTransform3D
affineTransform3D(CLIJ2, ClearCLImage, ClearCLImageInterface, float[]) - Static method in class net.haesleinhuepf.clij2.plugins.AffineTransform3D
affineTransform3D(CLIJ2, ClearCLImage, ClearCLImageInterface, AffineTransform3D) - Static method in class net.haesleinhuepf.clij2.plugins.AffineTransform3D
AffineTransform3D - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2019
AffineTransform3D() - Constructor for class net.haesleinhuepf.clij2.plugins.AffineTransform3D
applyVectorField(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deforms an image according to distances provided in the given vector images.
applyVectorField(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deforms an image according to distances provided in the given vector images.
applyVectorField(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.ApplyVectorField2D
applyVectorField(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.ApplyVectorField3D
applyVectorField2D(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deforms an image according to distances provided in the given vector images.
applyVectorField2D(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.ApplyVectorField2D
ApplyVectorField2D - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
ApplyVectorField2D() - Constructor for class net.haesleinhuepf.clij2.plugins.ApplyVectorField2D
applyVectorField3D(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deforms an image stack according to distances provided in the given vector image stacks.
applyVectorField3D(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.ApplyVectorField3D
ApplyVectorField3D - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
ApplyVectorField3D() - Constructor for class net.haesleinhuepf.clij2.plugins.ApplyVectorField3D
argMaximumZProjection(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the maximum projection of an image stack along Z.
argMaximumZProjection(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.ArgMaximumZProjection
ArgMaximumZProjection - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
ArgMaximumZProjection() - Constructor for class net.haesleinhuepf.clij2.plugins.ArgMaximumZProjection
automaticThreshold(ClearCLBuffer, ClearCLBuffer, String) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: The automatic thresholder utilizes the threshold methods from ImageJ on a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
automaticThreshold(ClearCLBuffer, ClearCLBuffer, String, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: The automatic thresholder utilizes the threshold methods from ImageJ on a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
automaticThreshold(CLIJ2, ClearCLBuffer, ClearCLBuffer, String) - Static method in class net.haesleinhuepf.clij2.plugins.AutomaticThreshold
automaticThreshold(CLIJ2, ClearCLBuffer, ClearCLBuffer, String, Float, Float, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.AutomaticThreshold
AutomaticThreshold - Class in net.haesleinhuepf.clij2.plugins: AutomaticThreshold
AutomaticThreshold() - Constructor for class net.haesleinhuepf.clij2.plugins.AutomaticThreshold
AutoThresholderImageJ1 - Class in net.haesleinhuepf.clij2.plugins: Copied from https://github.com/imagej/imagej1/blob/master/ij/process/AutoThresholder.java To reduce dependencies towards ImageJ1
AutoThresholderImageJ1() - Constructor for class net.haesleinhuepf.clij2.plugins.AutoThresholderImageJ1
AutoThresholderImageJ1.Method - Enum in net.haesleinhuepf.clij2.plugins
averageDistanceOfClosestPoints(ClearCLBuffer, ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
averageDistanceOfClosestPoints(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfNClosestPoints: Deprecated.
averageDistanceOfNClosestPoints(ClearCLBuffer, ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the average of the n closest points for every point in a distance matrix.
averageDistanceOfNClosestPoints(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfNClosestPoints
AverageDistanceOfNClosestPoints - Class in net.haesleinhuepf.clij2.plugins
AverageDistanceOfNClosestPoints() - Constructor for class net.haesleinhuepf.clij2.plugins.AverageDistanceOfNClosestPoints
averageDistanceOfNFarOffPoints(ClearCLBuffer, ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the average of the n far off (most distant) points for every point in a distance matrix.
averageDistanceOfNFarOffPoints(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfNFarOffPoints
AverageDistanceOfNFarOffPoints - Class in net.haesleinhuepf.clij2.plugins
AverageDistanceOfNFarOffPoints() - Constructor for class net.haesleinhuepf.clij2.plugins.AverageDistanceOfNFarOffPoints
averageDistanceOfTouchingNeighbors(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Takes a touch matrix and a distance matrix to determine the average distance of touching neighbors for every object.
averageDistanceOfTouchingNeighbors(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfTouchingNeighbors
AverageDistanceOfTouchingNeighbors - Class in net.haesleinhuepf.clij2.plugins
AverageDistanceOfTouchingNeighbors() - Constructor for class net.haesleinhuepf.clij2.plugins.AverageDistanceOfTouchingNeighbors

B

binaryAnd(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes a binary image (containing pixel values 0 and 1) from two images X and Y by connecting pairs of pixels x and y with the binary AND operator &.
binaryAnd(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.BinaryAnd
BinaryAnd - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
BinaryAnd() - Constructor for class net.haesleinhuepf.clij2.plugins.BinaryAnd
binaryEdgeDetection(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines pixels/voxels which are on the surface of binary objects and sets only them to 1 in the destination image.
binaryEdgeDetection(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.BinaryEdgeDetection
BinaryEdgeDetection - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf September 2019
BinaryEdgeDetection() - Constructor for class net.haesleinhuepf.clij2.plugins.BinaryEdgeDetection
binaryFillHoles(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Fills holes (pixels with value 0 surrounded by pixels with value 1) in a binary image.
binaryFillHoles(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.BinaryFillHoles
BinaryFillHoles - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf March 2020
BinaryFillHoles() - Constructor for class net.haesleinhuepf.clij2.plugins.BinaryFillHoles
binaryIntersection(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes a binary image (containing pixel values 0 and 1) from two images X and Y by connecting pairs of pixels x and y with the binary intersection operator &.
binaryIntersection(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.BinaryIntersection
BinaryIntersection - Class in net.haesleinhuepf.clij2.plugins
BinaryIntersection() - Constructor for class net.haesleinhuepf.clij2.plugins.BinaryIntersection
binaryNot(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes a binary image (containing pixel values 0 and 1) from an image X by negating its pixel values x using the binary NOT operator ! All pixel values except 0 in the input image are interpreted as 1.
binaryNot(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.BinaryNot
BinaryNot - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
BinaryNot() - Constructor for class net.haesleinhuepf.clij2.plugins.BinaryNot
binaryOr(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes a binary image (containing pixel values 0 and 1) from two images X and Y by connecting pairs of pixels x and y with the binary OR operator |.
binaryOr(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.BinaryOr
BinaryOr - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
BinaryOr() - Constructor for class net.haesleinhuepf.clij2.plugins.BinaryOr
binarySubtract(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Subtracts one binary image from another.
binarySubtract(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.BinarySubtract
BinarySubtract - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf September 2019
BinarySubtract() - Constructor for class net.haesleinhuepf.clij2.plugins.BinarySubtract
binaryUnion(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes a binary image (containing pixel values 0 and 1) from two images X and Y by connecting pairs of pixels x and y with the binary union operator |.
binaryUnion(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.BinaryUnion
BinaryUnion - Class in net.haesleinhuepf.clij2.plugins
BinaryUnion() - Constructor for class net.haesleinhuepf.clij2.plugins.BinaryUnion
binaryXOr(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes a binary image (containing pixel values 0 and 1) from two images X and Y by connecting pairs of pixels x and y with the binary operators AND &, OR | and NOT ! implementing the XOR operator.
binaryXOr(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.BinaryXOr
BinaryXOr - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
BinaryXOr() - Constructor for class net.haesleinhuepf.clij2.plugins.BinaryXOr
blur(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
blur(ClearCLImageInterface, ClearCLImageInterface, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
blur(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.GaussianBlur2D: Deprecated.
blur(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.GaussianBlur3D: Deprecated.
blur2D(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
blur2D(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.GaussianBlur2D: Deprecated.
Blur2D - Class in net.haesleinhuepf.clij2.plugins: Deprecated.
Blur2D() - Constructor for class net.haesleinhuepf.clij2.plugins.Blur2D: Deprecated.
blur3D(ClearCLImageInterface, ClearCLImageInterface, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
blur3D(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.GaussianBlur3D: Deprecated.
Blur3D - Class in net.haesleinhuepf.clij2.plugins: Deprecated.
Blur3D() - Constructor for class net.haesleinhuepf.clij2.plugins.Blur3D: Deprecated.
blur3DSliceBySlice(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.Blur3DSliceBySlice: Deprecated.
Blur3DSliceBySlice - Class in net.haesleinhuepf.clij2.plugins: Deprecated.
Blur3DSliceBySlice() - Constructor for class net.haesleinhuepf.clij2.plugins.Blur3DSliceBySlice: Deprecated.
bottomHatBox(ClearCLBuffer, ClearCLBuffer, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Apply a bottom-hat filter for background subtraction to the input image.
bottomHatBox(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.BottomHatBox
BottomHatBox - Class in net.haesleinhuepf.clij2.plugins
BottomHatBox() - Constructor for class net.haesleinhuepf.clij2.plugins.BottomHatBox
bottomHatSphere(ClearCLBuffer, ClearCLBuffer, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Applies a bottom-hat filter for background subtraction to the input image.
bottomHatSphere(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.BottomHatSphere
BottomHatSphere - Class in net.haesleinhuepf.clij2.plugins
BottomHatSphere() - Constructor for class net.haesleinhuepf.clij2.plugins.BottomHatSphere
BOUNDING_BOX_DEPTH - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
BOUNDING_BOX_END_X - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
BOUNDING_BOX_END_Y - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
BOUNDING_BOX_END_Z - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
BOUNDING_BOX_HEIGHT - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
BOUNDING_BOX_WIDTH - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
BOUNDING_BOX_X - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
BOUNDING_BOX_Y - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
BOUNDING_BOX_Z - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
boundingBox(ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the bounding box of all non-zero pixels in a binary image.
boundingBox(CLIJ2, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.BoundingBox
BoundingBox - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
BoundingBox() - Constructor for class net.haesleinhuepf.clij2.plugins.BoundingBox
Byte1 - Class in net.haesleinhuepf.clij2.converters.helptypes
Byte1(byte[]) - Constructor for class net.haesleinhuepf.clij2.converters.helptypes.Byte1
Byte1ToClearCLBufferConverter - Class in net.haesleinhuepf.clij2.converters.implementations
Byte1ToClearCLBufferConverter() - Constructor for class net.haesleinhuepf.clij2.converters.implementations.Byte1ToClearCLBufferConverter
Byte2 - Class in net.haesleinhuepf.clij2.converters.helptypes
Byte2(byte[][]) - Constructor for class net.haesleinhuepf.clij2.converters.helptypes.Byte2
Byte2ToClearCLBufferConverter - Class in net.haesleinhuepf.clij2.converters.implementations
Byte2ToClearCLBufferConverter() - Constructor for class net.haesleinhuepf.clij2.converters.implementations.Byte2ToClearCLBufferConverter
Byte3 - Class in net.haesleinhuepf.clij2.converters.helptypes
Byte3(byte[][][]) - Constructor for class net.haesleinhuepf.clij2.converters.helptypes.Byte3
Byte3ToClearCLBufferConverter - Class in net.haesleinhuepf.clij2.converters.implementations
Byte3ToClearCLBufferConverter() - Constructor for class net.haesleinhuepf.clij2.converters.implementations.Byte3ToClearCLBufferConverter

C

centerOfMass(ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the center of mass of an image or image stack.
centerOfMass(CLIJ2, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.CenterOfMass
CenterOfMass - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
CenterOfMass() - Constructor for class net.haesleinhuepf.clij2.plugins.CenterOfMass
CENTROID_X - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
CENTROID_Y - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
CENTROID_Z - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
centroidsOfBackgroundAndLabels(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the centroids of the background and all labels in a label image or image stack.
centroidsOfBackgroundAndLabels(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.CentroidsOfBackgroundAndLabels
CentroidsOfBackgroundAndLabels - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf July 2020
CentroidsOfBackgroundAndLabels() - Constructor for class net.haesleinhuepf.clij2.plugins.CentroidsOfBackgroundAndLabels
centroidsOfLabels(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the centroids of all labels in a label image or image stack.
centroidsOfLabels(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.CentroidsOfLabels
CentroidsOfLabels - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
CentroidsOfLabels() - Constructor for class net.haesleinhuepf.clij2.plugins.CentroidsOfLabels
Char1 - Class in net.haesleinhuepf.clij2.converters.helptypes
Char1(char[]) - Constructor for class net.haesleinhuepf.clij2.converters.helptypes.Char1
Char1ToClearCLBufferConverter - Class in net.haesleinhuepf.clij2.converters.implementations
Char1ToClearCLBufferConverter() - Constructor for class net.haesleinhuepf.clij2.converters.implementations.Char1ToClearCLBufferConverter
Char2 - Class in net.haesleinhuepf.clij2.converters.helptypes
Char2(char[][]) - Constructor for class net.haesleinhuepf.clij2.converters.helptypes.Char2
Char2ToClearCLBufferConverter - Class in net.haesleinhuepf.clij2.converters.implementations
Char2ToClearCLBufferConverter() - Constructor for class net.haesleinhuepf.clij2.converters.implementations.Char2ToClearCLBufferConverter
Char3 - Class in net.haesleinhuepf.clij2.converters.helptypes
Char3(char[][][]) - Constructor for class net.haesleinhuepf.clij2.converters.helptypes.Char3
Char3ToClearCLBufferConverter - Class in net.haesleinhuepf.clij2.converters.implementations
Char3ToClearCLBufferConverter() - Constructor for class net.haesleinhuepf.clij2.converters.implementations.Char3ToClearCLBufferConverter
checkDimensions(long...) - Static method in class net.haesleinhuepf.clij2.utilities.CLIJUtilities
clear() - Method in class net.haesleinhuepf.clij2.CLIJ2
Clear - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Clear() - Constructor for class net.haesleinhuepf.clij2.plugins.Clear
ClearCLBufferToByte2Converter - Class in net.haesleinhuepf.clij2.converters.implementations
ClearCLBufferToByte2Converter() - Constructor for class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToByte2Converter
ClearCLBufferToByte3Converter - Class in net.haesleinhuepf.clij2.converters.implementations
ClearCLBufferToByte3Converter() - Constructor for class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToByte3Converter
ClearCLBufferToChar2Converter - Class in net.haesleinhuepf.clij2.converters.implementations
ClearCLBufferToChar2Converter() - Constructor for class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToChar2Converter
ClearCLBufferToChar3Converter - Class in net.haesleinhuepf.clij2.converters.implementations
ClearCLBufferToChar3Converter() - Constructor for class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToChar3Converter
ClearCLBufferToDouble2Converter - Class in net.haesleinhuepf.clij2.converters.implementations: Todo: Shall we deal with float images differently than with double images?
ClearCLBufferToDouble2Converter() - Constructor for class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToDouble2Converter
ClearCLBufferToDouble3Converter - Class in net.haesleinhuepf.clij2.converters.implementations
ClearCLBufferToDouble3Converter() - Constructor for class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToDouble3Converter
ClearCLBufferToFloat2Converter - Class in net.haesleinhuepf.clij2.converters.implementations: Todo: Shall we deal with float images differently than with double images?
ClearCLBufferToFloat2Converter() - Constructor for class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToFloat2Converter
ClearCLBufferToFloat3Converter - Class in net.haesleinhuepf.clij2.converters.implementations
ClearCLBufferToFloat3Converter() - Constructor for class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToFloat3Converter
clij - Variable in class net.haesleinhuepf.clij2.CLIJ2
CLIJ2 - Class in net.haesleinhuepf.clij2: The CLIJ2 gateway Author: @haesleinhuepf December 2019
CLIJ2(CLIJ) - Constructor for class net.haesleinhuepf.clij2.CLIJ2: Deprecated.
CLIJ2MacroExtensions - Class in net.haesleinhuepf.clij2.utilities: CLIJ2MacroExtensions
CLIJ2MacroExtensions() - Constructor for class net.haesleinhuepf.clij2.utilities.CLIJ2MacroExtensions
CLIJ2Ops - Interface in net.haesleinhuepf.clij2
CLIJLegacyMacroExtensions - Class in net.haesleinhuepf.clij2.legacy: Author: @haesleinhuepf June 2019
CLIJLegacyMacroExtensions() - Constructor for class net.haesleinhuepf.clij2.legacy.CLIJLegacyMacroExtensions
CLIJUtilities - Class in net.haesleinhuepf.clij2.utilities
CLIJUtilities() - Constructor for class net.haesleinhuepf.clij2.utilities.CLIJUtilities
clinfo() - Static method in class net.haesleinhuepf.clij2.CLIJ2
ClInfo - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
ClInfo() - Constructor for class net.haesleinhuepf.clij2.plugins.ClInfo
close() - Method in class net.haesleinhuepf.clij2.CLIJ2
closeIndexGapsInLabelMap(ClearCLBuffer, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Analyses a label map and if there are gaps in the indexing (e.g.
closeIndexGapsInLabelMap(CLIJ2, ClearCLBuffer, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.CloseIndexGapsInLabelMap
CloseIndexGapsInLabelMap - Class in net.haesleinhuepf.clij2.plugins: ConnectedComponentsLabeling
CloseIndexGapsInLabelMap() - Constructor for class net.haesleinhuepf.clij2.plugins.CloseIndexGapsInLabelMap
closingBox(ClearCLBuffer, ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Apply a binary closing to the input image by calling n dilations and n erosions subsequenntly.
closingBox(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.ClosingBox
ClosingBox - Class in net.haesleinhuepf.clij2.plugins
ClosingBox() - Constructor for class net.haesleinhuepf.clij2.plugins.ClosingBox
closingDiamond(ClearCLBuffer, ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Apply a binary closing to the input image by calling n dilations and n erosions subsequently.
closingDiamond(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.ClosingDiamond
ClosingDiamond - Class in net.haesleinhuepf.clij2.plugins
ClosingDiamond() - Constructor for class net.haesleinhuepf.clij2.plugins.ClosingDiamond
combineHorizontally(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Combines two images or stacks in X.
combineHorizontally(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.CombineHorizontally
CombineHorizontally - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf May 2020
CombineHorizontally() - Constructor for class net.haesleinhuepf.clij2.plugins.CombineHorizontally
combineVertically(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Combines two images or stacks in Y.
combineVertically(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.CombineVertically
CombineVertically - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf May 2020
CombineVertically() - Constructor for class net.haesleinhuepf.clij2.plugins.CombineVertically
concatenateStacks(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Concatenates two stacks in Z.
concatenateStacks(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.ConcatenateStacks
ConcatenateStacks - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf March 2020
ConcatenateStacks() - Constructor for class net.haesleinhuepf.clij2.plugins.ConcatenateStacks
connectedComponentsLabeling(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
connectedComponentsLabeling(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabeling: Deprecated.
ConnectedComponentsLabeling - Class in net.haesleinhuepf.clij2.plugins: Deprecated.
ConnectedComponentsLabeling() - Constructor for class net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabeling: Deprecated.
connectedComponentsLabeling_internal(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, boolean, boolean) - Static method in class net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabeling: Deprecated.
connectedComponentsLabelingBox(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Performs connected components analysis inspecting the box neighborhood of every pixel to a binary image and generates a label map.
connectedComponentsLabelingBox(ClearCLImageInterface, ClearCLImageInterface, boolean) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Performs connected components analysis inspecting the box neighborhood of every pixel to a binary image and generates a label map.
connectedComponentsLabelingBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabelingBox
connectedComponentsLabelingBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, boolean) - Static method in class net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabelingBox
ConnectedComponentsLabelingBox - Class in net.haesleinhuepf.clij2.plugins: ConnectedComponentsLabeling
ConnectedComponentsLabelingBox() - Constructor for class net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabelingBox
connectedComponentsLabelingDiamond(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Performs connected components analysis inspecting the diamond neighborhood of every pixel to a binary image and generates a label map.
connectedComponentsLabelingDiamond(ClearCLImageInterface, ClearCLImageInterface, boolean) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Performs connected components analysis inspecting the diamond neighborhood of every pixel to a binary image and generates a label map.
connectedComponentsLabelingDiamond(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabelingDiamond
connectedComponentsLabelingDiamond(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, boolean) - Static method in class net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabelingDiamond
ConnectedComponentsLabelingDiamond - Class in net.haesleinhuepf.clij2.plugins: ConnectedComponentsLabeling
ConnectedComponentsLabelingDiamond() - Constructor for class net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabelingDiamond
convert(Object, Class<T>) - Method in class net.haesleinhuepf.clij2.CLIJ2
convert(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToByte2Converter
convert(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToByte3Converter
convert(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToChar2Converter
convert(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToChar3Converter
convert(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToDouble2Converter
convert(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToDouble3Converter
convert(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToFloat2Converter
convert(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToFloat3Converter
convert(Byte1) - Method in class net.haesleinhuepf.clij2.converters.implementations.Byte1ToClearCLBufferConverter
convert(Byte2) - Method in class net.haesleinhuepf.clij2.converters.implementations.Byte2ToClearCLBufferConverter
convert(Byte3) - Method in class net.haesleinhuepf.clij2.converters.implementations.Byte3ToClearCLBufferConverter
convert(Char1) - Method in class net.haesleinhuepf.clij2.converters.implementations.Char1ToClearCLBufferConverter
convert(Char2) - Method in class net.haesleinhuepf.clij2.converters.implementations.Char2ToClearCLBufferConverter
convert(Char3) - Method in class net.haesleinhuepf.clij2.converters.implementations.Char3ToClearCLBufferConverter
convert(Double1) - Method in class net.haesleinhuepf.clij2.converters.implementations.Double1ToClearCLBufferConverter
convert(Double2) - Method in class net.haesleinhuepf.clij2.converters.implementations.Double2ToClearCLBufferConverter
convert(Double3) - Method in class net.haesleinhuepf.clij2.converters.implementations.Double3ToClearCLBufferConverter
convert(Float1) - Method in class net.haesleinhuepf.clij2.converters.implementations.Float1ToClearCLBufferConverter
convert(Float2) - Method in class net.haesleinhuepf.clij2.converters.implementations.Float2ToClearCLBufferConverter
convert(Float3) - Method in class net.haesleinhuepf.clij2.converters.implementations.Float3ToClearCLBufferConverter
ConvertFloat - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
ConvertFloat() - Constructor for class net.haesleinhuepf.clij2.plugins.ConvertFloat
ConvertUInt16 - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
ConvertUInt16() - Constructor for class net.haesleinhuepf.clij2.plugins.ConvertUInt16
ConvertUInt8 - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
ConvertUInt8() - Constructor for class net.haesleinhuepf.clij2.plugins.ConvertUInt8
convolve(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Convolve the image with a given kernel image.
convolve(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.Convolve
Convolve - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
Convolve() - Constructor for class net.haesleinhuepf.clij2.plugins.Convolve
copy(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Copies an image.
copy(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.Copy
Copy - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Copy() - Constructor for class net.haesleinhuepf.clij2.plugins.Copy
copySlice(ClearCLImageInterface, ClearCLImageInterface, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: This method has two purposes: It copies a 2D image to a given slice z position in a 3D image stack or It copies a given slice at position z in an image stack to a 2D image.
copySlice(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.CopySlice
CopySlice - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
CopySlice() - Constructor for class net.haesleinhuepf.clij2.plugins.CopySlice
countNonZeroPixels(ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the number of all pixels in a given image which are not equal to 0.
countNonZeroPixels(CLIJ2, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixels
CountNonZeroPixels - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf June 2019
CountNonZeroPixels() - Constructor for class net.haesleinhuepf.clij2.plugins.CountNonZeroPixels
countNonZeroPixels2DSphere(ClearCLBuffer, ClearCLBuffer, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Counts non-zero pixels in a sphere around every pixel.
countNonZeroPixels2DSphere(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixels2DSphere
CountNonZeroPixels2DSphere - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
CountNonZeroPixels2DSphere() - Constructor for class net.haesleinhuepf.clij2.plugins.CountNonZeroPixels2DSphere
countNonZeroPixelsLocally(ClearCLBuffer, ClearCLBuffer, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
countNonZeroPixelsLocally(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixels2DSphere: Deprecated.
countNonZeroPixelsLocallySliceBySlice(ClearCLBuffer, ClearCLBuffer, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
countNonZeroPixelsLocallySliceBySlice(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixelsSliceBySliceSphere: Deprecated.
countNonZeroPixelsSliceBySliceSphere(ClearCLBuffer, ClearCLBuffer, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Counts non-zero pixels in a sphere around every pixel slice by slice in a stack.
countNonZeroPixelsSliceBySliceSphere(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixelsSliceBySliceSphere
CountNonZeroPixelsSliceBySliceSphere - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
CountNonZeroPixelsSliceBySliceSphere() - Constructor for class net.haesleinhuepf.clij2.plugins.CountNonZeroPixelsSliceBySliceSphere
countNonZeroVoxels3DSphere(ClearCLBuffer, ClearCLBuffer, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Counts non-zero voxels in a sphere around every voxel.
countNonZeroVoxels3DSphere(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.CountNonZeroVoxels3DSphere
CountNonZeroVoxels3DSphere - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
CountNonZeroVoxels3DSphere() - Constructor for class net.haesleinhuepf.clij2.plugins.CountNonZeroVoxels3DSphere
countNonZeroVoxelsLocally(ClearCLBuffer, ClearCLBuffer, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
countNonZeroVoxelsLocally(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.CountNonZeroVoxels3DSphere: Deprecated.
countTouchingNeighbors(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Takes a touch matrix as input and delivers a vector with number of touching neighbors per label as a vector.
countTouchingNeighbors(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.CountTouchingNeighbors
CountTouchingNeighbors - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf October 2019
CountTouchingNeighbors() - Constructor for class net.haesleinhuepf.clij2.plugins.CountTouchingNeighbors
create(double[]) - Method in class net.haesleinhuepf.clij2.CLIJ2
create(long[]) - Method in class net.haesleinhuepf.clij2.CLIJ2
create(long[], ImageChannelDataType) - Method in class net.haesleinhuepf.clij2.CLIJ2
create(long[], NativeTypeEnum) - Method in class net.haesleinhuepf.clij2.CLIJ2
create(long, long) - Method in class net.haesleinhuepf.clij2.CLIJ2
create(long, long, long) - Method in class net.haesleinhuepf.clij2.CLIJ2
create(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.CLIJ2
create(ClearCLImage) - Method in class net.haesleinhuepf.clij2.CLIJ2
Create2D - Class in net.haesleinhuepf.clij2.plugins: Release
Create2D() - Constructor for class net.haesleinhuepf.clij2.plugins.Create2D
Create3D - Class in net.haesleinhuepf.clij2.plugins: Release
Create3D() - Constructor for class net.haesleinhuepf.clij2.plugins.Create3D
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.ArgMaximumZProjection
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfNClosestPoints
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfNFarOffPoints
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfTouchingNeighbors
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.CentroidsOfBackgroundAndLabels
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.CentroidsOfLabels
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.CloseIndexGapsInLabelMap
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.CombineHorizontally
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.CombineVertically
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.ConcatenateStacks
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabeling: Deprecated.
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.ConvertFloat
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.ConvertUInt16
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.ConvertUInt8
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.Convolve
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.CopySlice
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.CountTouchingNeighbors
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.Create2D
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.Create3D
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.Crop2D
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.Crop3D
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.DepthColorProjection
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.DistanceMap
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.DivideImages
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.Downsample2D
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.Downsample3D
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.DownsampleSliceBySliceHalfMedian
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.EntropyBox
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabels
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsOnEdges
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsOnSurface
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsSubSurface
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsWithValuesOutOfRange
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsWithValuesWithinRange
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.Exponential
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.GenerateBinaryOverlapMatrix
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.GenerateDistanceMatrix
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.GenerateJaccardIndexMatrix
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.GenerateTouchCountMatrix
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.GenerateTouchMatrix
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.GradientX
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.GradientY
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.GradientZ
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.Histogram
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.ImageToStack
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.Invert
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.LabelCentroidsToPointList
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.LabelledSpotsToPointList
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.LabelSpots
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.Logarithm
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.MaximumOfTouchingNeighbors
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.MaximumXProjection
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.MaximumYProjection
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.MaximumZProjection
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.MaximumZProjectionBounded
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.MeanOfTouchingNeighbors
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.MeanXProjection
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.MeanYProjection
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.MeanZProjection
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.MeanZProjectionBounded
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.MedianOfTouchingNeighbors
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.MedianZProjection
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.MinimumDistanceOfTouchingNeighbors
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.MinimumOfTouchingNeighbors
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.MinimumXProjection
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.MinimumYProjection
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjection
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjectionBounded
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjectionThresholdedBounded
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.MultiplyMatrix
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.NClosestDistances
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.NClosestPoints
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.Paste2D
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.Paste3D
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.PointIndexListToMesh
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.PointlistToLabelledSpots
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.Power
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.PowerImages
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.PushArray
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.PushResultsTable
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.PushResultsTableColumn
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.PushString
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.ReduceStack
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.Resample
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.ResliceBottom
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.ResliceLeft
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.ResliceRadial
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.ResliceRadialTop
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.ResliceRight
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.ResliceTop
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.ResultsTableColumnToImage
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.ResultsTableToImage2D: Deprecated.
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.RotateClockwise
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.RotateCounterClockwise
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.ShortestDistances
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.SpotsToPointList
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationOfTouchingNeighbors
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationZProjection
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.SumImageSliceBySlice
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.SumXProjection
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.SumYProjection
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.SumZProjection
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.TouchMatrixToMesh
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.TransposeXY
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.TransposeXZ
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.TransposeYZ
createOutputBufferFromSource(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.plugins.VoronoiLabeling
crop(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Crops a given rectangle out of a given image.
crop(ClearCLImageInterface, ClearCLImageInterface, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Crops a given rectangle out of a given image.
crop(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Crop2D
crop(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Crop3D
crop2D(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Crops a given rectangle out of a given image.
crop2D(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Crop2D
Crop2D - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
Crop2D() - Constructor for class net.haesleinhuepf.clij2.plugins.Crop2D
crop3D(ClearCLImageInterface, ClearCLImageInterface, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Crops a given sub-stack out of a given image stack.
crop3D(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Crop3D
Crop3D - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
Crop3D() - Constructor for class net.haesleinhuepf.clij2.plugins.Crop3D
customOperation(String, String, HashMap) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Executes a custom operation wirtten in OpenCL on a custom list of images.
customOperation(CLIJ2, String, String, HashMap<String, ClearCLBuffer>) - Static method in class net.haesleinhuepf.clij2.plugins.CustomOperation
CustomOperation - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf
CustomOperation() - Constructor for class net.haesleinhuepf.clij2.plugins.CustomOperation

D

data - Variable in class net.haesleinhuepf.clij2.converters.helptypes.Byte1
data - Variable in class net.haesleinhuepf.clij2.converters.helptypes.Byte2
data - Variable in class net.haesleinhuepf.clij2.converters.helptypes.Byte3
data - Variable in class net.haesleinhuepf.clij2.converters.helptypes.Char1
data - Variable in class net.haesleinhuepf.clij2.converters.helptypes.Char2
data - Variable in class net.haesleinhuepf.clij2.converters.helptypes.Char3
data - Variable in class net.haesleinhuepf.clij2.converters.helptypes.Double1
data - Variable in class net.haesleinhuepf.clij2.converters.helptypes.Double2
data - Variable in class net.haesleinhuepf.clij2.converters.helptypes.Double3
data - Variable in class net.haesleinhuepf.clij2.converters.helptypes.Float1
data - Variable in class net.haesleinhuepf.clij2.converters.helptypes.Float2
data - Variable in class net.haesleinhuepf.clij2.converters.helptypes.Float3
Default - net.haesleinhuepf.clij2.plugins.AutoThresholderImageJ1.Method
depthColorProjection(ClearCLImageInterface, ClearCLBuffer, ClearCLBuffer, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines a maximum projection of an image stack and does a color coding of the determined arg Z (position of the found maximum).
depthColorProjection(CLIJ2, ClearCLImageInterface, ClearCLBuffer, ClearCLBuffer, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.DepthColorProjection
DepthColorProjection - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
DepthColorProjection() - Constructor for class net.haesleinhuepf.clij2.plugins.DepthColorProjection
detectLabelEdges(ClearCLImageInterface, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Takes a labelmap and returns an image where all pixels on label edges are set to 1 and all other pixels to 0.
detectLabelEdges(CLIJ2, ClearCLImageInterface, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.DetectLabelEdges
DetectLabelEdges - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf October 2019
DetectLabelEdges() - Constructor for class net.haesleinhuepf.clij2.plugins.DetectLabelEdges
detectMaxima2DBox(ClearCLBuffer, ClearCLBuffer, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Detects local maxima in a given square/cubic neighborhood.
detectMaxima2DBox(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.DetectMaxima2DBox
DetectMaxima2DBox - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf May 2020
DetectMaxima2DBox() - Constructor for class net.haesleinhuepf.clij2.plugins.DetectMaxima2DBox
detectMaxima3DBox(ClearCLBuffer, ClearCLBuffer, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Detects local maxima in a given square/cubic neighborhood.
detectMaxima3DBox(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.DetectMaxima3DBox
DetectMaxima3DBox - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf May 2020
DetectMaxima3DBox() - Constructor for class net.haesleinhuepf.clij2.plugins.DetectMaxima3DBox
detectMaximaBox(ClearCLImageInterface, ClearCLImageInterface, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
detectMaximaBox(ClearCLImageInterface, ClearCLImageInterface, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Detects local maxima in a given square/cubic neighborhood.
detectMaximaBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.DetectMaximaBox: Deprecated.
detectMaximaBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.DetectMaximaBox: Deprecated.
DetectMaximaBox - Class in net.haesleinhuepf.clij2.plugins: Deprecated.
DetectMaximaBox() - Constructor for class net.haesleinhuepf.clij2.plugins.DetectMaximaBox: Deprecated.
detectMaximaSliceBySliceBox(ClearCLBuffer, ClearCLBuffer, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Detects local maxima in a given square neighborhood of an input image stack.
detectMaximaSliceBySliceBox(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.DetectMaximaSliceBySliceBox
DetectMaximaSliceBySliceBox - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
DetectMaximaSliceBySliceBox() - Constructor for class net.haesleinhuepf.clij2.plugins.DetectMaximaSliceBySliceBox
detectMinima2DBox(ClearCLBuffer, ClearCLBuffer, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Detects local minima in a given square/cubic neighborhood.
detectMinima2DBox(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.DetectMinima2DBox
DetectMinima2DBox - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf May 2020
DetectMinima2DBox() - Constructor for class net.haesleinhuepf.clij2.plugins.DetectMinima2DBox
detectMinima3DBox(ClearCLBuffer, ClearCLBuffer, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Detects local minima in a given square/cubic neighborhood.
detectMinima3DBox(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.DetectMinima3DBox
DetectMinima3DBox - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf May 2020
DetectMinima3DBox() - Constructor for class net.haesleinhuepf.clij2.plugins.DetectMinima3DBox
detectMinimaBox(ClearCLImageInterface, ClearCLImageInterface, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
detectMinimaBox(ClearCLImageInterface, ClearCLImageInterface, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Detects local minima in a given square/cubic neighborhood.
detectMinimaBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.DetectMinimaBox: Deprecated.
detectMinimaBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.DetectMinimaBox: Deprecated.
DetectMinimaBox - Class in net.haesleinhuepf.clij2.plugins: Deprecated.
DetectMinimaBox() - Constructor for class net.haesleinhuepf.clij2.plugins.DetectMinimaBox: Deprecated.
detectMinimaSliceBySliceBox(ClearCLBuffer, ClearCLBuffer, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Detects local minima in a given square neighborhood of an input image stack.
detectMinimaSliceBySliceBox(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.DetectMinimaSliceBySliceBox
DetectMinimaSliceBySliceBox - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
DetectMinimaSliceBySliceBox() - Constructor for class net.haesleinhuepf.clij2.plugins.DetectMinimaSliceBySliceBox
differenceOfGaussian(ClearCLBuffer, ClearCLBuffer, double, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Applies Gaussian blur to the input image twice with different sigma values resulting in two images which are then subtracted from each other.
differenceOfGaussian(ClearCLBuffer, ClearCLBuffer, double, double, double, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Applies Gaussian blur to the input image twice with different sigma values resulting in two images which are then subtracted from each other.
differenceOfGaussian(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.DifferenceOfGaussian2D
differenceOfGaussian(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float, Float, Float, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.DifferenceOfGaussian3D
differenceOfGaussian2D(ClearCLBuffer, ClearCLBuffer, double, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Applies Gaussian blur to the input image twice with different sigma values resulting in two images which are then subtracted from each other.
differenceOfGaussian2D(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.DifferenceOfGaussian2D
DifferenceOfGaussian2D - Class in net.haesleinhuepf.clij2.plugins
DifferenceOfGaussian2D() - Constructor for class net.haesleinhuepf.clij2.plugins.DifferenceOfGaussian2D
differenceOfGaussian3D(ClearCLBuffer, ClearCLBuffer, double, double, double, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Applies Gaussian blur to the input image twice with different sigma values resulting in two images which are then subtracted from each other.
differenceOfGaussian3D(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float, Float, Float, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.DifferenceOfGaussian3D
DifferenceOfGaussian3D - Class in net.haesleinhuepf.clij2.plugins
DifferenceOfGaussian3D() - Constructor for class net.haesleinhuepf.clij2.plugins.DifferenceOfGaussian3D
dilateBox(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes a binary image with pixel values 0 and 1 containing the binary dilation of a given input image.
dilateBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.DilateBox
DilateBox - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
DilateBox() - Constructor for class net.haesleinhuepf.clij2.plugins.DilateBox
dilateBoxSliceBySlice(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes a binary image with pixel values 0 and 1 containing the binary dilation of a given input image.
dilateBoxSliceBySlice(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.DilateBoxSliceBySlice
DilateBoxSliceBySlice - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
DilateBoxSliceBySlice() - Constructor for class net.haesleinhuepf.clij2.plugins.DilateBoxSliceBySlice
dilateSphere(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes a binary image with pixel values 0 and 1 containing the binary dilation of a given input image.
dilateSphere(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.DilateSphere
DilateSphere - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
DilateSphere() - Constructor for class net.haesleinhuepf.clij2.plugins.DilateSphere
dilateSphereSliceBySlice(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes a binary image with pixel values 0 and 1 containing the binary dilation of a given input image.
dilateSphereSliceBySlice(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.DilateSphereSliceBySlice
DilateSphereSliceBySlice - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
DilateSphereSliceBySlice() - Constructor for class net.haesleinhuepf.clij2.plugins.DilateSphereSliceBySlice
distanceMap(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Generates a distance map from a binary image.
distanceMap(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.DistanceMap
DistanceMap - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf September 2019
DistanceMap() - Constructor for class net.haesleinhuepf.clij2.plugins.DistanceMap
distanceMatrixToMesh(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Generates a mesh from a distance matric and a list of point coordinates.
distanceMatrixToMesh(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer, Float) - Static method in class net.haesleinhuepf.clij2.plugins.DistanceMatrixToMesh
DistanceMatrixToMesh - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2019
DistanceMatrixToMesh() - Constructor for class net.haesleinhuepf.clij2.plugins.DistanceMatrixToMesh
divideImages(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Divides two images X and Y by each other pixel wise.
divideImages(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.DivideImages
DivideImages - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
DivideImages() - Constructor for class net.haesleinhuepf.clij2.plugins.DivideImages
doTimeTracing() - Method in class net.haesleinhuepf.clij2.CLIJ2
doTimeTracing() - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops
Double1 - Class in net.haesleinhuepf.clij2.converters.helptypes
Double1(double[]) - Constructor for class net.haesleinhuepf.clij2.converters.helptypes.Double1
Double1ToClearCLBufferConverter - Class in net.haesleinhuepf.clij2.converters.implementations
Double1ToClearCLBufferConverter() - Constructor for class net.haesleinhuepf.clij2.converters.implementations.Double1ToClearCLBufferConverter
Double2 - Class in net.haesleinhuepf.clij2.converters.helptypes
Double2(double[][]) - Constructor for class net.haesleinhuepf.clij2.converters.helptypes.Double2
Double2ToClearCLBufferConverter - Class in net.haesleinhuepf.clij2.converters.implementations
Double2ToClearCLBufferConverter() - Constructor for class net.haesleinhuepf.clij2.converters.implementations.Double2ToClearCLBufferConverter
Double3 - Class in net.haesleinhuepf.clij2.converters.helptypes
Double3(double[][][]) - Constructor for class net.haesleinhuepf.clij2.converters.helptypes.Double3
Double3ToClearCLBufferConverter - Class in net.haesleinhuepf.clij2.converters.implementations
Double3ToClearCLBufferConverter() - Constructor for class net.haesleinhuepf.clij2.converters.implementations.Double3ToClearCLBufferConverter
downsample(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
downsample(ClearCLImageInterface, ClearCLImageInterface, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
downsample(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.Downsample2D: Deprecated.
downsample(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.Downsample3D: Deprecated.
downsample2D(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
downsample2D(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.Downsample2D: Deprecated.
Downsample2D - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Downsample2D() - Constructor for class net.haesleinhuepf.clij2.plugins.Downsample2D
downsample3D(ClearCLImageInterface, ClearCLImageInterface, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
downsample3D(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.Downsample3D: Deprecated.
Downsample3D - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Downsample3D() - Constructor for class net.haesleinhuepf.clij2.plugins.Downsample3D
downsampleSliceBySliceHalfMedian(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Scales an image using scaling factors 0.5 for X and Y dimensions.
downsampleSliceBySliceHalfMedian(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.DownsampleSliceBySliceHalfMedian
DownsampleSliceBySliceHalfMedian - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
DownsampleSliceBySliceHalfMedian() - Constructor for class net.haesleinhuepf.clij2.plugins.DownsampleSliceBySliceHalfMedian
drawBox(ClearCLImageInterface, double, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Draws a box at a given start point with given size.
drawBox(ClearCLImageInterface, double, double, double, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Draws a box at a given start point with given size.
drawBox(ClearCLImageInterface, double, double, double, double, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Draws a box at a given start point with given size.
drawBox(CLIJ2, ClearCLImageInterface, Float, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.DrawBox
drawBox(CLIJ2, ClearCLImageInterface, Float, Float, Float, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.DrawBox
drawBox(CLIJ2, ClearCLImageInterface, Float, Float, Float, Float, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.DrawBox
DrawBox - Class in net.haesleinhuepf.clij2.plugins: DrawLine
DrawBox() - Constructor for class net.haesleinhuepf.clij2.plugins.DrawBox
drawLine(ClearCLImageInterface, double, double, double, double, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Draws a line between two points with a given thickness.
drawLine(ClearCLImageInterface, double, double, double, double, double, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Draws a line between two points with a given thickness.
drawLine(CLIJ2, ClearCLImageInterface, Float, Float, Float, Float, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.DrawLine
drawLine(CLIJ2, ClearCLImageInterface, Float, Float, Float, Float, Float, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.DrawLine
DrawLine - Class in net.haesleinhuepf.clij2.plugins: DrawLine
DrawLine() - Constructor for class net.haesleinhuepf.clij2.plugins.DrawLine
drawSphere(ClearCLImageInterface, double, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Draws a sphere around a given point with given radii in x, y and z (if 3D).
drawSphere(ClearCLImageInterface, double, double, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Draws a sphere around a given point with given radii in x, y and z (if 3D).
drawSphere(ClearCLImageInterface, double, double, double, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Draws a sphere around a given point with given radii in x, y and z (if 3D).
drawSphere(ClearCLImageInterface, double, double, double, double, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Draws a sphere around a given point with given radii in x, y and z (if 3D).
drawSphere(CLIJ2, ClearCLImageInterface, Float, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.DrawSphere
drawSphere(CLIJ2, ClearCLImageInterface, Float, Float, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.DrawSphere
drawSphere(CLIJ2, ClearCLImageInterface, Float, Float, Float, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.DrawSphere
drawSphere(CLIJ2, ClearCLImageInterface, Float, Float, Float, Float, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.DrawSphere
DrawSphere - Class in net.haesleinhuepf.clij2.plugins: DrawLine
DrawSphere() - Constructor for class net.haesleinhuepf.clij2.plugins.DrawSphere

E

entropyBox(ClearCLBuffer, ClearCLBuffer, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the local entropy in a box with a given radius around every pixel.
entropyBox(ClearCLBuffer, ClearCLBuffer, double, double, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the local entropy in a box with a given radius around every pixel.
entropyBox(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.EntropyBox
entropyBox(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Integer, Integer, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.EntropyBox
EntropyBox - Class in net.haesleinhuepf.clij2.plugins
EntropyBox() - Constructor for class net.haesleinhuepf.clij2.plugins.EntropyBox
equal(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines if two images A and B equal pixel wise.
equal(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.Equal
Equal - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf August 2019
Equal() - Constructor for class net.haesleinhuepf.clij2.plugins.Equal
equalConstant(ClearCLImageInterface, ClearCLImageInterface, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines if an image A and a constant b are equal.
equalConstant(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float) - Static method in class net.haesleinhuepf.clij2.plugins.EqualConstant
EqualConstant - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf August 2019
EqualConstant() - Constructor for class net.haesleinhuepf.clij2.plugins.EqualConstant
equalizeMeanIntensitiesOfSlices(ClearCLBuffer, ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines correction factors for each z-slice so that the average intensity in all slices can be made the same and multiplies these factors with the slices.
equalizeMeanIntensitiesOfSlices(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.EqualizeMeanIntensitiesOfSlices
EqualizeMeanIntensitiesOfSlices - Class in net.haesleinhuepf.clij2.plugins
EqualizeMeanIntensitiesOfSlices() - Constructor for class net.haesleinhuepf.clij2.plugins.EqualizeMeanIntensitiesOfSlices
erodeBox(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes a binary image with pixel values 0 and 1 containing the binary erosion of a given input image.
erodeBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.ErodeBox
ErodeBox - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
ErodeBox() - Constructor for class net.haesleinhuepf.clij2.plugins.ErodeBox
erodeBoxSliceBySlice(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes a binary image with pixel values 0 and 1 containing the binary erosion of a given input image.
erodeBoxSliceBySlice(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.ErodeBoxSliceBySlice
ErodeBoxSliceBySlice - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
ErodeBoxSliceBySlice() - Constructor for class net.haesleinhuepf.clij2.plugins.ErodeBoxSliceBySlice
erodeSphere(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes a binary image with pixel values 0 and 1 containing the binary erosion of a given input image.
erodeSphere(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.ErodeSphere
ErodeSphere - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
ErodeSphere() - Constructor for class net.haesleinhuepf.clij2.plugins.ErodeSphere
erodeSphereSliceBySlice(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes a binary image with pixel values 0 and 1 containing the binary erosion of a given input image.
erodeSphereSliceBySlice(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.ErodeSphereSliceBySlice
ErodeSphereSliceBySlice - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
ErodeSphereSliceBySlice() - Constructor for class net.haesleinhuepf.clij2.plugins.ErodeSphereSliceBySlice
excludeLabels(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: This operation removes labels from a labelmap and renumbers the remaining labels.
excludeLabels(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.ExcludeLabels
ExcludeLabels - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
ExcludeLabels() - Constructor for class net.haesleinhuepf.clij2.plugins.ExcludeLabels
excludeLabelsOnEdges(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Removes all labels from a label map which touch the edges of the image (in X, Y and Z if the image is 3D).
excludeLabelsOnEdges(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsOnEdges
ExcludeLabelsOnEdges - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf June 2019
ExcludeLabelsOnEdges() - Constructor for class net.haesleinhuepf.clij2.plugins.ExcludeLabelsOnEdges
excludeLabelsOnSurface(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: This operation follows a ray from a given position towards a label (or opposite direction) and checks if there is another label between the label an the image border.
excludeLabelsOnSurface(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsOnSurface
ExcludeLabelsOnSurface - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf June 2019
ExcludeLabelsOnSurface() - Constructor for class net.haesleinhuepf.clij2.plugins.ExcludeLabelsOnSurface
excludeLabelsSubSurface(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: This operation follows a ray from a given position towards a label (or opposite direction) and checks if there is another label between the label an the image border.
excludeLabelsSubSurface(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsSubSurface
ExcludeLabelsSubSurface - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf June 2019
ExcludeLabelsSubSurface() - Constructor for class net.haesleinhuepf.clij2.plugins.ExcludeLabelsSubSurface
excludeLabelsWithValuesOutOfRange(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: This operation removes labels from a labelmap and renumbers the remaining labels.
excludeLabelsWithValuesOutOfRange(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsWithValuesOutOfRange
ExcludeLabelsWithValuesOutOfRange - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf May 2020
ExcludeLabelsWithValuesOutOfRange() - Constructor for class net.haesleinhuepf.clij2.plugins.ExcludeLabelsWithValuesOutOfRange
excludeLabelsWithValuesWithinRange(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: This operation removes labels from a labelmap and renumbers the remaining labels.
excludeLabelsWithValuesWithinRange(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsWithValuesWithinRange
ExcludeLabelsWithValuesWithinRange - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf May 2020
ExcludeLabelsWithValuesWithinRange() - Constructor for class net.haesleinhuepf.clij2.plugins.ExcludeLabelsWithValuesWithinRange
execute(Class, String, String, long[], long[], long[], Map<String, Object>) - Method in class net.haesleinhuepf.clij2.CLIJ2
execute(Class, String, String, long[], long[], long[], Map<String, Object>, Map<String, Object>) - Method in class net.haesleinhuepf.clij2.CLIJ2
execute(Class, String, String, long[], long[], Map<String, Object>) - Method in class net.haesleinhuepf.clij2.CLIJ2
execute(Class, String, String, long[], long[], Map<String, Object>, Map<String, Object>) - Method in class net.haesleinhuepf.clij2.CLIJ2
execute(String, String, long[], long[], Map<String, Object>, Map<String, Object>) - Method in class net.haesleinhuepf.clij2.CLIJ2
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Absolute
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.AbsoluteDifference
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.AddImageAndScalar
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.AddImages
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.AddImagesWeighted
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.AdjacencyMatrixToTouchMatrix
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.AffineTransform: Deprecated.
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.AffineTransform2D
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.AffineTransform3D
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ApplyVectorField2D
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ApplyVectorField3D
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ArgMaximumZProjection
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.AutomaticThreshold
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfNClosestPoints
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfNFarOffPoints
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfTouchingNeighbors
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.BinaryAnd
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.BinaryEdgeDetection
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.BinaryFillHoles
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.BinaryNot
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.BinaryOr
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.BinarySubtract
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.BinaryXOr
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Blur3DSliceBySlice: Deprecated.
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.BottomHatBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.BottomHatSphere
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.BoundingBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.CenterOfMass
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.CentroidsOfBackgroundAndLabels
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.CentroidsOfLabels
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Clear
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ClInfo
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.CloseIndexGapsInLabelMap
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ClosingBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ClosingDiamond
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.CombineHorizontally
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.CombineVertically
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ConcatenateStacks
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabeling: Deprecated.
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabelingBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabelingDiamond
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ConvertFloat
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ConvertUInt16
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ConvertUInt8
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Convolve
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Copy
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.CopySlice
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixels
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixels2DSphere
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixelsSliceBySliceSphere
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroVoxels3DSphere
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.CountTouchingNeighbors
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Create2D
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Create3D
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Crop2D
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Crop3D
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.CustomOperation
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.DepthColorProjection
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.DetectLabelEdges
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaxima2DBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaxima3DBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaximaBox: Deprecated.
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaximaSliceBySliceBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinima2DBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinima3DBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinimaBox: Deprecated.
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinimaSliceBySliceBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.DifferenceOfGaussian2D
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.DifferenceOfGaussian3D
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.DilateBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.DilateBoxSliceBySlice
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.DilateSphere
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.DilateSphereSliceBySlice
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.DistanceMap
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.DistanceMatrixToMesh
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.DivideImages
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Downsample2D
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Downsample3D
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.DownsampleSliceBySliceHalfMedian
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.DrawBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.DrawLine
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.DrawSphere
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.EntropyBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Equal
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.EqualConstant
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.EqualizeMeanIntensitiesOfSlices
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ErodeBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ErodeBoxSliceBySlice
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ErodeSphere
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ErodeSphereSliceBySlice
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabels
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsOnEdges
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsOnSurface
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsSubSurface
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsWithValuesOutOfRange
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsWithValuesWithinRange
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Exponential
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ExtendLabelingViaVoronoi
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Flip2D
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Flip3D
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.FloodFillDiamond
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GaussianBlur2D
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GaussianBlur3D
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GenerateBinaryOverlapMatrix
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GenerateDistanceMatrix
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GenerateJaccardIndexMatrix
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GenerateParametricImage
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GenerateParametricImageFromResultsTableColumn
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GenerateTouchCountMatrix
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GenerateTouchMatrix
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GetAutomaticThreshold
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GetBoundingBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GetCenterOfMass
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GetDimensions
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GetGPUProperties
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GetJaccardIndex
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GetMaximumOfAllPixels
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GetMeanOfAllPixels
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GetMeanOfMaskedPixels
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GetMeanSquaredError
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GetMinimumOfAllPixels
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GetSize: Deprecated.
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GetSorensenDiceCoefficient
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GetSumOfAllPixels
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GetTimeTracing
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GPUProperties
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GradientX
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GradientY
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GradientZ
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Greater
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GreaterConstant
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GreaterOrEqual
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.GreaterOrEqualConstant
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Help
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Histogram
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Image2DToResultsTable: Deprecated.
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ImageToStack
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.InvalidateKernelCache
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Invert
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.JaccardIndex
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.LabelCentroidsToPointList
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.LabelledSpotsToPointList
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.LabelSpots
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.LabelToMask
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.LabelVoronoiOctagon
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.LaplaceBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.LaplaceDiamond
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ListAvailableGPUs
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.LocalThreshold
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Logarithm
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Mask
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MaskLabel
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MaskStackWithPlane
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MatrixEqual
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Maximum2DBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Maximum2DSphere
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Maximum3DBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Maximum3DSphere
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MaximumImageAndScalar
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MaximumImages
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MaximumOctagon
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MaximumOfAllPixels
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MaximumOfMaskedPixels
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MaximumOfTouchingNeighbors
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MaximumSliceBySliceSphere
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MaximumXProjection
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MaximumYProjection
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MaximumZProjection
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MaximumZProjectionBounded
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Mean2DBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Mean2DSphere
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Mean3DBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Mean3DSphere
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MeanClosestSpotDistance
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MeanOfAllPixels
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MeanOfMaskedPixels
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MeanOfPixelsAboveThreshold
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MeanOfTouchingNeighbors
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MeanSliceBySliceSphere
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MeanSquaredError
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MeanXProjection
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MeanYProjection
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MeanZProjection
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MeanZProjectionBounded
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Median2DBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Median2DSphere
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Median3DBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Median3DSphere
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MedianOfTouchingNeighbors
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MedianSliceBySliceBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MedianSliceBySliceSphere
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MedianZProjection
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Minimum2DBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Minimum2DSphere
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Minimum3DBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Minimum3DSphere
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MinimumDistanceOfTouchingNeighbors
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MinimumImageAndScalar
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MinimumImages
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MinimumOctagon
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MinimumOfAllPixels
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MinimumOfMaskedPixels
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MinimumOfTouchingNeighbors
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MinimumSliceBySliceSphere
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MinimumXProjection
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MinimumYProjection
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjection
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjectionBounded
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjectionThresholdedBounded
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImageAndCoordinate
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImageAndScalar
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImages
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImageStackWithScalars
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyMatrix
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyStackWithPlane
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.NClosestDistances
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.NClosestPoints
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.NeighborsOfNeighbors
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.NonzeroMaximumBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.NonzeroMaximumDiamond
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.NonzeroMinimumBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.NonzeroMinimumDiamond
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.NotEqual
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.NotEqualConstant
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.OnlyzeroOverwriteMaximumBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.OnlyzeroOverwriteMaximumDiamond
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.OpeningBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.OpeningDiamond
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Paste2D
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Paste3D
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.PointIndexListToMesh
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.PointlistToLabelledSpots
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Power
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.PowerImages
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Print
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Pull
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.PullAsROI
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.PullBinary
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.PullLabelsToROIList
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.PullLabelsToROIManager
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.PullString
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.PullToCurrentSlice
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.PullToCurrentSliceSelection
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.PullToResultsTable
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.PullToROIManager
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Push
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.PushArray
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.PushCurrentSelection
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.PushCurrentSlice
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.PushCurrentSliceSelection
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.PushCurrentZStack
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.PushResultsTable
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.PushResultsTableColumn
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.PushString
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ReduceStack
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Release
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ReplaceIntensities
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ReplaceIntensity
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ReplacePixelsIfZero
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ReportMemory
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Resample
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ResliceBottom
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ResliceLeft
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ResliceRadial
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ResliceRadialTop
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ResliceRight
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ResliceTop
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ResultsTableColumnToImage
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ResultsTableToImage2D: Deprecated.
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Rotate2D
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Rotate3D
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.RotateClockwise
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.RotateCounterClockwise
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SaveAsTIF
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Scale: Deprecated.
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Scale2D
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Scale3D
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Set
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SetColumn
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SetImageBorders
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SetNonZeroPixelsToPixelIndex
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SetPlane
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SetRampX
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SetRampY
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SetRampZ
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SetRandom
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SetRow
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SetWhereXequalsY
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SetWhereXgreaterThanY
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SetWhereXsmallerThanY
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ShortestDistances
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Smaller
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SmallerConstant
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SmallerOrEqual
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SmallerOrEqualConstant
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Sobel
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SorensenDiceCoefficient
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SpotsToPointList
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SquaredDifference
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationOfAllPixels
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationOfMaskedPixels
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationOfTouchingNeighbors
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationZProjection
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.StartTimeTracing
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.StatisticsOfBackgroundAndLabelledPixels
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.StatisticsOfImage
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.StopTimeTracing
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SubtractImageFromScalar
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SubtractImages
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SumImageSliceBySlice
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SumOfAllPixels
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SumXProjection
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SumYProjection
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.SumZProjection
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Threshold
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdDefault
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdHuang
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIJ_IsoData
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIntermodes
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIsoData
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdLi
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMaxEntropy
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMean
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMinError
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMinimum
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMoments
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdOtsu
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdPercentile
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdRenyiEntropy
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdShanbhag
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdTriangle
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdYen
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.TopHatBox
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.TopHatSphere
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.TouchMatrixToAdjacencyMatrix
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.TouchMatrixToMesh
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Translate2D
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Translate3D
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.TransposeXY
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.TransposeXZ
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.TransposeYZ
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.UndefinedToZero
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.VarianceOfAllPixels
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.VarianceOfMaskedPixels
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.VoronoiLabeling
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.VoronoiOctagon
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.Watershed
executeCL() - Method in class net.haesleinhuepf.clij2.plugins.WriteValuesToPositions
executeCode(String, String, long[], long[], long[], Map<String, Object>) - Method in class net.haesleinhuepf.clij2.CLIJ2
executeCode(String, String, long[], long[], Map<String, Object>) - Method in class net.haesleinhuepf.clij2.CLIJ2
executeCode(String, String, long[], long[], Map<String, Object>, Map<String, Object>) - Method in class net.haesleinhuepf.clij2.CLIJ2
executeCodeSubsequently(String, String, long[], long[], long[], Map<String, Object>, Map<String, Object>, ClearCLKernel) - Method in class net.haesleinhuepf.clij2.CLIJ2
executeCodeSubsequently(String, String, long[], long[], Map<String, Object>, Map<String, Object>, ClearCLKernel) - Method in class net.haesleinhuepf.clij2.CLIJ2
executeCodeSubsequently(String, String, long[], long[], Map<String, Object>, ClearCLKernel) - Method in class net.haesleinhuepf.clij2.CLIJ2
executeSeparableKernel(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Class, String, String, int, int, int, float, float, float, long) - Static method in class net.haesleinhuepf.clij2.utilities.CLIJUtilities
executeSubsequently(Class, String, String, long[], long[], long[], Map<String, Object>, Map<String, Object>, ClearCLKernel) - Method in class net.haesleinhuepf.clij2.CLIJ2
executeSubsequently(Class, String, String, long[], long[], Map<String, Object>, Map<String, Object>, ClearCLKernel) - Method in class net.haesleinhuepf.clij2.CLIJ2
executeSubsequently(Class, String, String, long[], long[], Map<String, Object>, ClearCLKernel) - Method in class net.haesleinhuepf.clij2.CLIJ2
exponential(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes base exponential of all pixels values.
exponential(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.Exponential
Exponential - Class in net.haesleinhuepf.clij2.plugins: Based on net.haesleinhuepf.clij.macro.modules.Power.java Author: @haesleinhuepf December 2018 modified by: @phaub July 2019
Exponential() - Constructor for class net.haesleinhuepf.clij2.plugins.Exponential
extendLabelingViaVoronoi(ClearCLBuffer, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Takes a label map image and dilates the regions using a octagon shape until they touch.
extendLabelingViaVoronoi(CLIJ2, ClearCLBuffer, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.ExtendLabelingViaVoronoi
ExtendLabelingViaVoronoi - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf June 2020
ExtendLabelingViaVoronoi() - Constructor for class net.haesleinhuepf.clij2.plugins.ExtendLabelingViaVoronoi

F

FallBackCLIJMacroPluginService - Class in net.haesleinhuepf.clij2.legacy
FallBackCLIJMacroPluginService() - Constructor for class net.haesleinhuepf.clij2.legacy.FallBackCLIJMacroPluginService
FallBackCLIJMacroPluginServiceInitializer - Class in net.haesleinhuepf.clij2.legacy
FallBackCLIJMacroPluginServiceInitializer() - Constructor for class net.haesleinhuepf.clij2.legacy.FallBackCLIJMacroPluginServiceInitializer
fillHistogram(ClearCLBuffer, ClearCLBuffer, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
fillHistogram(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.Histogram: Deprecated.
flip(ClearCLImageInterface, ClearCLImageInterface, boolean, boolean) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Flips an image in X and/or Y direction depending on if flip_x and/or flip_y are set to true or false.
flip(ClearCLImageInterface, ClearCLImageInterface, boolean, boolean, boolean) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Flips an image in X and/or Y direction depending on if flip_x and/or flip_y are set to true or false.
flip(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Boolean, Boolean) - Static method in class net.haesleinhuepf.clij2.plugins.Flip2D
flip(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Boolean, Boolean, Boolean) - Static method in class net.haesleinhuepf.clij2.plugins.Flip3D
flip2D(ClearCLImageInterface, ClearCLImageInterface, boolean, boolean) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Flips an image in X and/or Y direction depending on if flip_x and/or flip_y are set to true or false.
flip2D(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Boolean, Boolean) - Static method in class net.haesleinhuepf.clij2.plugins.Flip2D
Flip2D - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Flip2D() - Constructor for class net.haesleinhuepf.clij2.plugins.Flip2D
flip3D(ClearCLImageInterface, ClearCLImageInterface, boolean, boolean, boolean) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Flips an image in X, Y and/or Z direction depending on if flip_x, flip_y and/or flip_z are set to true or false.
flip3D(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Boolean, Boolean, Boolean) - Static method in class net.haesleinhuepf.clij2.plugins.Flip3D
Flip3D - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Flip3D() - Constructor for class net.haesleinhuepf.clij2.plugins.Flip3D
Float - Variable in class net.haesleinhuepf.clij2.CLIJ2
Float1 - Class in net.haesleinhuepf.clij2.converters.helptypes
Float1(float[]) - Constructor for class net.haesleinhuepf.clij2.converters.helptypes.Float1
Float1ToClearCLBufferConverter - Class in net.haesleinhuepf.clij2.converters.implementations
Float1ToClearCLBufferConverter() - Constructor for class net.haesleinhuepf.clij2.converters.implementations.Float1ToClearCLBufferConverter
Float2 - Class in net.haesleinhuepf.clij2.converters.helptypes
Float2(float[][]) - Constructor for class net.haesleinhuepf.clij2.converters.helptypes.Float2
Float2ToClearCLBufferConverter - Class in net.haesleinhuepf.clij2.converters.implementations
Float2ToClearCLBufferConverter() - Constructor for class net.haesleinhuepf.clij2.converters.implementations.Float2ToClearCLBufferConverter
Float3 - Class in net.haesleinhuepf.clij2.converters.helptypes
Float3(float[][][]) - Constructor for class net.haesleinhuepf.clij2.converters.helptypes.Float3
Float3ToClearCLBufferConverter - Class in net.haesleinhuepf.clij2.converters.implementations
Float3ToClearCLBufferConverter() - Constructor for class net.haesleinhuepf.clij2.converters.implementations.Float3ToClearCLBufferConverter
floodFillDiamond(ClearCLBuffer, ClearCLBuffer, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Replaces recursively all pixels of value a with value b if the pixels have a neighbor with value b.
floodFillDiamond(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.FloodFillDiamond
FloodFillDiamond - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf March 2020
FloodFillDiamond() - Constructor for class net.haesleinhuepf.clij2.plugins.FloodFillDiamond

G

gaussianBlur(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the Gaussian blurred image of an image given two sigma values in X and Y.
gaussianBlur(ClearCLImageInterface, ClearCLImageInterface, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the Gaussian blurred image of an image given two sigma values in X and Y.
gaussianBlur(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.GaussianBlur2D
gaussianBlur(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.GaussianBlur3D
gaussianBlur2D(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the Gaussian blurred image of an image given two sigma values in X and Y.
gaussianBlur2D(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.GaussianBlur2D
GaussianBlur2D - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
GaussianBlur2D() - Constructor for class net.haesleinhuepf.clij2.plugins.GaussianBlur2D
gaussianBlur3D(ClearCLImageInterface, ClearCLImageInterface, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the Gaussian blurred image of an image given two sigma values in X, Y and Z.
gaussianBlur3D(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.GaussianBlur3D
GaussianBlur3D - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
GaussianBlur3D() - Constructor for class net.haesleinhuepf.clij2.plugins.GaussianBlur3D
generateBinaryOverlapMatrix(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Takes two labelmaps with n and m labels and generates a (n+1)*(m+1) matrix where all pixels are set to 0 exept those where labels overlap between the label maps.
generateBinaryOverlapMatrix(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.GenerateBinaryOverlapMatrix
GenerateBinaryOverlapMatrix - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf October 2019
GenerateBinaryOverlapMatrix() - Constructor for class net.haesleinhuepf.clij2.plugins.GenerateBinaryOverlapMatrix
generateDistanceMatrix(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the distance between all point coordinates given in two point lists.
generateDistanceMatrix(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.GenerateDistanceMatrix
GenerateDistanceMatrix - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
GenerateDistanceMatrix() - Constructor for class net.haesleinhuepf.clij2.plugins.GenerateDistanceMatrix
generateJaccardIndexMatrix(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Takes two labelmaps with n and m labels_2 and generates a (n+1)*(m+1) matrix where all labels_1 are set to 0 exept those where labels_2 overlap between the label maps.
generateJaccardIndexMatrix(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.GenerateJaccardIndexMatrix
GenerateJaccardIndexMatrix - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf June 2020
GenerateJaccardIndexMatrix() - Constructor for class net.haesleinhuepf.clij2.plugins.GenerateJaccardIndexMatrix
generateParametricImage(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Take a labelmap and a vector of values to replace label 1 with the 1st value in the vector.
generateParametricImage(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.GenerateParametricImage
GenerateParametricImage - Class in net.haesleinhuepf.clij2.plugins
GenerateParametricImage() - Constructor for class net.haesleinhuepf.clij2.plugins.GenerateParametricImage
generateParametricImageFromResultsTableColumn(ClearCLImageInterface, ClearCLImageInterface, ResultsTable, String) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Take a labelmap and a column from the results table to replace label 1 with the 1st value in the vector.
generateParametricImageFromResultsTableColumn(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ResultsTable, String) - Static method in class net.haesleinhuepf.clij2.plugins.GenerateParametricImageFromResultsTableColumn
GenerateParametricImageFromResultsTableColumn - Class in net.haesleinhuepf.clij2.plugins
GenerateParametricImageFromResultsTableColumn() - Constructor for class net.haesleinhuepf.clij2.plugins.GenerateParametricImageFromResultsTableColumn
generateTouchCountMatrix(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Takes a label map with n labels and generates a (n+1)*(n+1) matrix where all pixels are set the number of pixels where labels touch (diamond neighborhood).
generateTouchCountMatrix(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.GenerateTouchCountMatrix
GenerateTouchCountMatrix - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf June 2020
GenerateTouchCountMatrix() - Constructor for class net.haesleinhuepf.clij2.plugins.GenerateTouchCountMatrix
generateTouchMatrix(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Takes a labelmap with n labels and generates a (n+1)*(n+1) matrix where all pixels are set to 0 exept those where labels are touching.
generateTouchMatrix(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.GenerateTouchMatrix
GenerateTouchMatrix - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf October 2019
GenerateTouchMatrix() - Constructor for class net.haesleinhuepf.clij2.plugins.GenerateTouchMatrix
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.AffineTransform2D
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.AffineTransform3D
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.AutomaticThreshold
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.CustomOperation
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.EntropyBox
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.Exponential
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.GetAutomaticThreshold
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.Histogram
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.Logarithm
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.Sobel
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdDefault
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdHuang
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIJ_IsoData
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIntermodes
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIsoData
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdLi
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMaxEntropy
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMean
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMinError
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMinimum
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMoments
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdOtsu
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdPercentile
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdRenyiEntropy
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdShanbhag
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdTriangle
getAuthorName() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdYen
getAutomaticThreshold(ClearCLBuffer, String) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines a threshold according to a given method and saves it to the threshold_value variable.
getAutomaticThreshold(ClearCLBuffer, String, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines a threshold according to a given method and saves it to the threshold_value variable.
getAutomaticThreshold(CLIJ2, ClearCLBuffer, String) - Static method in class net.haesleinhuepf.clij2.plugins.GetAutomaticThreshold
getAutomaticThreshold(CLIJ2, ClearCLBuffer, String, Float, Float, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.GetAutomaticThreshold
GetAutomaticThreshold - Class in net.haesleinhuepf.clij2.plugins: AutomaticThreshold
GetAutomaticThreshold() - Constructor for class net.haesleinhuepf.clij2.plugins.GetAutomaticThreshold
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Absolute
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.AbsoluteDifference
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.AddImageAndScalar
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.AddImages
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.AddImagesWeighted
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.AdjacencyMatrixToTouchMatrix
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.AffineTransform: Deprecated.
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.AffineTransform2D
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.AffineTransform3D
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ApplyVectorField2D
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ApplyVectorField3D
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ArgMaximumZProjection
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.AutomaticThreshold
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfNClosestPoints
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfNFarOffPoints
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfTouchingNeighbors
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.BinaryAnd
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.BinaryEdgeDetection
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.BinaryFillHoles
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.BinaryNot
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.BinaryOr
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.BinarySubtract
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.BinaryXOr
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Blur3DSliceBySlice: Deprecated.
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.BottomHatBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.BottomHatSphere
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.BoundingBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.CenterOfMass
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.CentroidsOfBackgroundAndLabels
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.CentroidsOfLabels
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Clear
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ClInfo
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.CloseIndexGapsInLabelMap
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ClosingBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ClosingDiamond
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.CombineHorizontally
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.CombineVertically
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ConcatenateStacks
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabeling: Deprecated.
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ConvertFloat
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ConvertUInt16
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ConvertUInt8
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Convolve
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Copy
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.CopySlice
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixels
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixels2DSphere
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixelsSliceBySliceSphere
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroVoxels3DSphere
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.CountTouchingNeighbors
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Create2D
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Create3D
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Crop2D
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Crop3D
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.CustomOperation
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.DepthColorProjection
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.DetectLabelEdges
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaxima2DBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaxima3DBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaximaBox: Deprecated.
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaximaSliceBySliceBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinima2DBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinima3DBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinimaBox: Deprecated.
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinimaSliceBySliceBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.DifferenceOfGaussian2D
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.DifferenceOfGaussian3D
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.DilateBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.DilateBoxSliceBySlice
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.DilateSphere
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.DilateSphereSliceBySlice
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.DistanceMap
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.DistanceMatrixToMesh
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.DivideImages
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Downsample2D
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Downsample3D
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.DownsampleSliceBySliceHalfMedian
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.DrawBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.DrawLine
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.DrawSphere
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.EntropyBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Equal
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.EqualConstant
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.EqualizeMeanIntensitiesOfSlices
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ErodeBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ErodeBoxSliceBySlice
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ErodeSphere
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ErodeSphereSliceBySlice
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabels
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsOnEdges
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsOnSurface
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsSubSurface
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsWithValuesOutOfRange
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsWithValuesWithinRange
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Exponential
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ExtendLabelingViaVoronoi
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Flip2D
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Flip3D
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.FloodFillDiamond
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GaussianBlur2D
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GaussianBlur3D
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GenerateBinaryOverlapMatrix
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GenerateDistanceMatrix
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GenerateJaccardIndexMatrix
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GenerateParametricImage
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GenerateParametricImageFromResultsTableColumn
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GenerateTouchCountMatrix
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GenerateTouchMatrix
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GetAutomaticThreshold
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GetBoundingBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GetCenterOfMass
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GetDimensions
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GetGPUProperties
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GetJaccardIndex
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GetMaximumOfAllPixels
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GetMeanOfAllPixels
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GetMeanOfMaskedPixels
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GetMeanSquaredError
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GetMinimumOfAllPixels
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GetSize: Deprecated.
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GetSorensenDiceCoefficient
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GetSumOfAllPixels
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GetTimeTracing
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GPUProperties
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GradientX
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GradientY
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GradientZ
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Greater
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GreaterConstant
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GreaterOrEqual
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.GreaterOrEqualConstant
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Help
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Histogram
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Image2DToResultsTable: Deprecated.
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ImageToStack
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.InvalidateKernelCache
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Invert
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.JaccardIndex
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.LabelCentroidsToPointList
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.LabelledSpotsToPointList
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.LabelSpots
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.LabelToMask
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.LabelVoronoiOctagon
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.LaplaceBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.LaplaceDiamond
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ListAvailableGPUs
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.LocalThreshold
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Logarithm
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Mask
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MaskLabel
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MaskStackWithPlane
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MatrixEqual
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Maximum2DBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Maximum2DSphere
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Maximum3DBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Maximum3DSphere
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MaximumImageAndScalar
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MaximumImages
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MaximumOctagon
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MaximumOfAllPixels
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MaximumOfMaskedPixels
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MaximumOfTouchingNeighbors
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MaximumSliceBySliceSphere
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MaximumXProjection
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MaximumYProjection
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MaximumZProjection
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MaximumZProjectionBounded
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Mean2DBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Mean2DSphere
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Mean3DBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Mean3DSphere
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MeanClosestSpotDistance
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MeanOfAllPixels
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MeanOfMaskedPixels
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MeanOfPixelsAboveThreshold
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MeanOfTouchingNeighbors
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MeanSliceBySliceSphere
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MeanSquaredError
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MeanXProjection
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MeanYProjection
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MeanZProjection
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MeanZProjectionBounded
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Median2DBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Median2DSphere
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Median3DBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Median3DSphere
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MedianOfTouchingNeighbors
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MedianSliceBySliceBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MedianSliceBySliceSphere
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MedianZProjection
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Minimum2DBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Minimum2DSphere
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Minimum3DBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Minimum3DSphere
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MinimumDistanceOfTouchingNeighbors
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MinimumImageAndScalar
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MinimumImages
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MinimumOctagon
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MinimumOfAllPixels
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MinimumOfMaskedPixels
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MinimumOfTouchingNeighbors
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MinimumSliceBySliceSphere
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MinimumXProjection
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MinimumYProjection
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjection
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjectionBounded
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjectionThresholdedBounded
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImageAndCoordinate
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImageAndScalar
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImages
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImageStackWithScalars
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyMatrix
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyStackWithPlane
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.NClosestDistances
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.NClosestPoints
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.NeighborsOfNeighbors
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.NonzeroMaximumBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.NonzeroMaximumDiamond
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.NonzeroMinimumBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.NonzeroMinimumDiamond
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.NotEqual
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.NotEqualConstant
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.OnlyzeroOverwriteMaximumBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.OnlyzeroOverwriteMaximumDiamond
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.OpeningBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.OpeningDiamond
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Paste2D
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Paste3D
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.PointIndexListToMesh
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.PointlistToLabelledSpots
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Power
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.PowerImages
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Print
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Pull
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.PullAsROI
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.PullBinary
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.PullLabelsToROIList
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.PullLabelsToROIManager
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.PullString
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.PullToCurrentSlice
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.PullToCurrentSliceSelection
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.PullToResultsTable
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.PullToROIManager
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Push
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.PushArray
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.PushCurrentSelection
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.PushCurrentSlice
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.PushCurrentSliceSelection
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.PushCurrentZStack
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.PushResultsTable
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.PushResultsTableColumn
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.PushString
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ReduceStack
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Release
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ReplaceIntensities
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ReplaceIntensity
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ReplacePixelsIfZero
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ReportMemory
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Resample
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ResliceBottom
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ResliceLeft
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ResliceRadial
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ResliceRadialTop
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ResliceRight
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ResliceTop
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ResultsTableColumnToImage
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ResultsTableToImage2D: Deprecated.
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Rotate2D
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Rotate3D
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.RotateClockwise
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.RotateCounterClockwise
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SaveAsTIF
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Scale2D
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Scale3D
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Set
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SetColumn
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SetImageBorders
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SetNonZeroPixelsToPixelIndex
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SetPlane
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SetRampX
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SetRampY
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SetRampZ
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SetRandom
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SetRow
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SetWhereXequalsY
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SetWhereXgreaterThanY
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SetWhereXsmallerThanY
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ShortestDistances
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Smaller
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SmallerConstant
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SmallerOrEqual
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SmallerOrEqualConstant
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Sobel
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SorensenDiceCoefficient
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SpotsToPointList
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SquaredDifference
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationOfAllPixels
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationOfMaskedPixels
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationOfTouchingNeighbors
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationZProjection
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.StartTimeTracing
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.StatisticsOfBackgroundAndLabelledPixels
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.StatisticsOfImage
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.StopTimeTracing
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SubtractImageFromScalar
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SubtractImages
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SumImageSliceBySlice
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SumOfAllPixels
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SumXProjection
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SumYProjection
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.SumZProjection
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Threshold
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdDefault
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdHuang
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIJ_IsoData
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIntermodes
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIsoData
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdLi
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMaxEntropy
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMean
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMinError
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMinimum
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMoments
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdOtsu
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdPercentile
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdRenyiEntropy
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdShanbhag
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdTriangle
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdYen
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.TopHatBox
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.TopHatSphere
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.TouchMatrixToAdjacencyMatrix
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.TouchMatrixToMesh
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Translate2D
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Translate3D
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.TransposeXY
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.TransposeXZ
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.TransposeYZ
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.UndefinedToZero
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.VarianceOfAllPixels
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.VarianceOfMaskedPixels
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.VoronoiLabeling
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.VoronoiOctagon
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.Watershed
getAvailableForDimensions() - Method in class net.haesleinhuepf.clij2.plugins.WriteValuesToPositions
getBoundingBox(ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the bounding box of all non-zero pixels in a binary image.
getBoundingBox(CLIJ2, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.GetBoundingBox
GetBoundingBox - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
GetBoundingBox() - Constructor for class net.haesleinhuepf.clij2.plugins.GetBoundingBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Absolute
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.AbsoluteDifference
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.AddImageAndScalar
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.AddImages
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.AddImagesWeighted
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.AdjacencyMatrixToTouchMatrix
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.AffineTransform: Deprecated.
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.AffineTransform2D
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.AffineTransform3D
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ApplyVectorField2D
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ApplyVectorField3D
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ArgMaximumZProjection
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.AutomaticThreshold
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfNClosestPoints
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfNFarOffPoints
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfTouchingNeighbors
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.BinaryAnd
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.BinaryEdgeDetection
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.BinaryFillHoles
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.BinaryNot
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.BinaryOr
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.BinarySubtract
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.BinaryXOr
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.BottomHatBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.BottomHatSphere
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.BoundingBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.CenterOfMass
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.CentroidsOfBackgroundAndLabels
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.CentroidsOfLabels
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.CloseIndexGapsInLabelMap
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ClosingBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ClosingDiamond
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.CombineHorizontally
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.CombineVertically
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ConcatenateStacks
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabelingBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabelingDiamond
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Convolve
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Copy
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.CopySlice
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixels
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixels2DSphere
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixelsSliceBySliceSphere
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroVoxels3DSphere
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.CountTouchingNeighbors
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Crop2D
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Crop3D
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.DetectLabelEdges
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaxima2DBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaxima3DBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaximaSliceBySliceBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinima2DBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinima3DBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinimaSliceBySliceBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.DifferenceOfGaussian2D
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.DifferenceOfGaussian3D
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.DilateBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.DilateBoxSliceBySlice
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.DilateSphere
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.DilateSphereSliceBySlice
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.DistanceMap
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.DistanceMatrixToMesh
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.DivideImages
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Downsample2D
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Downsample3D
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.DownsampleSliceBySliceHalfMedian
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.DrawBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.DrawLine
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.DrawSphere
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.EntropyBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Equal
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.EqualConstant
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.EqualizeMeanIntensitiesOfSlices
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ErodeBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ErodeBoxSliceBySlice
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ErodeSphere
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ErodeSphereSliceBySlice
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabels
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsOnEdges
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsOnSurface
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsSubSurface
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsWithValuesOutOfRange
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsWithValuesWithinRange
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Exponential
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ExtendLabelingViaVoronoi
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Flip2D
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Flip3D
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.FloodFillDiamond
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GaussianBlur2D
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GaussianBlur3D
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GenerateBinaryOverlapMatrix
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GenerateDistanceMatrix
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GenerateJaccardIndexMatrix
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GenerateParametricImage
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GenerateParametricImageFromResultsTableColumn
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GenerateTouchCountMatrix
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GenerateTouchMatrix
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GetAutomaticThreshold
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GetBoundingBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GetCenterOfMass
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GetDimensions
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GetGPUProperties
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GetJaccardIndex
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GetMaximumOfAllPixels
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GetMeanOfAllPixels
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GetMeanOfMaskedPixels
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GetMeanSquaredError
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GetMinimumOfAllPixels
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GetSorensenDiceCoefficient
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GetSumOfAllPixels
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GradientX
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GradientY
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GradientZ
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Greater
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GreaterConstant
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GreaterOrEqual
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.GreaterOrEqualConstant
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Histogram
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ImageToStack
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Invert
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.JaccardIndex
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.LabelledSpotsToPointList
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.LabelSpots
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.LabelToMask
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.LabelVoronoiOctagon
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.LaplaceBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.LaplaceDiamond
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.LocalThreshold
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Logarithm
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Mask
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MaskLabel
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MaskStackWithPlane
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MatrixEqual
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Maximum2DBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Maximum2DSphere
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Maximum3DBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Maximum3DSphere
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MaximumImageAndScalar
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MaximumImages
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MaximumOctagon
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MaximumOfAllPixels
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MaximumOfMaskedPixels
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MaximumOfTouchingNeighbors
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MaximumSliceBySliceSphere
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MaximumXProjection
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MaximumYProjection
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MaximumZProjection
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MaximumZProjectionBounded
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Mean2DBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Mean2DSphere
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Mean3DBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Mean3DSphere
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MeanClosestSpotDistance
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MeanOfAllPixels
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MeanOfMaskedPixels
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MeanOfPixelsAboveThreshold
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MeanOfTouchingNeighbors
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MeanSliceBySliceSphere
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MeanXProjection
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MeanYProjection
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MeanZProjection
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MeanZProjectionBounded
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Median2DBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Median2DSphere
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Median3DBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Median3DSphere
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MedianOfTouchingNeighbors
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MedianSliceBySliceBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MedianSliceBySliceSphere
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MedianZProjection
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Minimum2DBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Minimum2DSphere
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Minimum3DBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Minimum3DSphere
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MinimumDistanceOfTouchingNeighbors
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MinimumImageAndScalar
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MinimumImages
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MinimumOctagon
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MinimumOfAllPixels
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MinimumOfMaskedPixels
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MinimumOfTouchingNeighbors
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MinimumSliceBySliceSphere
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MinimumXProjection
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MinimumYProjection
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjection
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjectionBounded
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjectionThresholdedBounded
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImageAndCoordinate
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImageAndScalar
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImages
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImageStackWithScalars
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyMatrix
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyStackWithPlane
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.NClosestDistances
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.NClosestPoints
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.NeighborsOfNeighbors
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.NotEqual
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.NotEqualConstant
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.OpeningBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.OpeningDiamond
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Paste2D
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Paste3D
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.PointIndexListToMesh
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.PointlistToLabelledSpots
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Power
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.PowerImages
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.PullBinary
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.PullLabelsToROIList
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.PullLabelsToROIManager
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.PullToResultsTable
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.PullToROIManager
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ReduceStack
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ReplaceIntensities
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ReplaceIntensity
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ReplacePixelsIfZero
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Resample
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ResliceBottom
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ResliceLeft
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ResliceRadial
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ResliceRadialTop
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ResliceRight
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ResliceTop
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Rotate2D
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Rotate3D
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.RotateClockwise
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.RotateCounterClockwise
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Scale2D
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Scale3D
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Set
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.SetColumn
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.SetImageBorders
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.SetPlane
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.SetRampX
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.SetRampY
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.SetRampZ
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.SetRandom
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.SetRow
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.SetWhereXequalsY
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.SetWhereXgreaterThanY
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.SetWhereXsmallerThanY
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ShortestDistances
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Smaller
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.SmallerConstant
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.SmallerOrEqual
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.SmallerOrEqualConstant
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Sobel
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.SorensenDiceCoefficient
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.SpotsToPointList
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.SquaredDifference
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationOfAllPixels
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationOfMaskedPixels
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationOfTouchingNeighbors
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationZProjection
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.StatisticsOfBackgroundAndLabelledPixels
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.StatisticsOfImage
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.SubtractImageFromScalar
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.SubtractImages
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.SumImageSliceBySlice
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.SumOfAllPixels
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.SumXProjection
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.SumYProjection
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.SumZProjection
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Threshold
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdDefault
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdHuang
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIJ_IsoData
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIntermodes
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIsoData
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdLi
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMaxEntropy
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMean
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMinError
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMinimum
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMoments
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdOtsu
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdPercentile
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdRenyiEntropy
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdShanbhag
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdTriangle
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdYen
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.TopHatBox
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.TopHatSphere
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.TouchMatrixToAdjacencyMatrix
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.TouchMatrixToMesh
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Translate2D
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Translate3D
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.TransposeXY
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.TransposeXZ
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.TransposeYZ
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.UndefinedToZero
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.VarianceOfAllPixels
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.VarianceOfMaskedPixels
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.VoronoiLabeling
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.VoronoiOctagon
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.Watershed
getCategories() - Method in class net.haesleinhuepf.clij2.plugins.WriteValuesToPositions
getCenterOfMass(ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the center of mass of an image or image stack.
getCenterOfMass(CLIJ2, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.GetCenterOfMass
GetCenterOfMass - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
GetCenterOfMass() - Constructor for class net.haesleinhuepf.clij2.plugins.GetCenterOfMass
getClij() - Method in class net.haesleinhuepf.clij2.CLIJ2: Deprecated.
getCLIJ() - Method in class net.haesleinhuepf.clij2.CLIJ2
getCLIJ() - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops
getCLIJ2() - Method in class net.haesleinhuepf.clij2.AbstractCLIJ2Plugin
getCLIJ2() - Method in class net.haesleinhuepf.clij2.CLIJ2
getCLIJ2() - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops
getCLIJMacroPlugin(String) - Method in class net.haesleinhuepf.clij2.legacy.FallBackCLIJMacroPluginService
getCLIJMethodNames() - Method in class net.haesleinhuepf.clij2.legacy.FallBackCLIJMacroPluginService
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.AddImageAndScalar
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.AddImagesWeighted
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.CopySlice
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Create2D
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Create3D
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Crop2D
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Crop3D
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.DepthColorProjection
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.DifferenceOfGaussian2D
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.DifferenceOfGaussian3D
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.DrawBox
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.DrawLine
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.DrawSphere
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.EqualConstant
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.EqualizeMeanIntensitiesOfSlices
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsWithValuesOutOfRange
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsWithValuesWithinRange
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.FloodFillDiamond
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.GaussianBlur2D
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.GaussianBlur3D
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.GreaterConstant
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.GreaterOrEqualConstant
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.ImageToStack
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.LabelToMask
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.MaskLabel
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Maximum2DBox
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Maximum2DSphere
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Maximum3DBox
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Maximum3DSphere
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.MaximumSliceBySliceSphere
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.MaximumZProjectionBounded
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Mean2DBox
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Mean2DSphere
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Mean3DBox
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Mean3DSphere
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.MeanSliceBySliceSphere
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.MeanZProjectionBounded
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Median2DBox
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Median2DSphere
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Median3DBox
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Median3DSphere
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.MedianSliceBySliceBox
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.MedianSliceBySliceSphere
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Minimum2DBox
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Minimum2DSphere
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Minimum3DBox
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Minimum3DSphere
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.MinimumImageAndScalar
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.MinimumSliceBySliceSphere
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjectionBounded
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImageAndCoordinate
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImageAndScalar
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.NotEqualConstant
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Paste2D
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Paste3D
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.ReduceStack
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.ReplaceIntensity
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Resample
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Rotate2D
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Rotate3D
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.SaveAsTIF
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Scale2D
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Scale3D
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Set
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.SetColumn
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.SetPlane
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.SetRandom
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.SetRow
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.SmallerConstant
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.SmallerOrEqualConstant
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.SubtractImageFromScalar
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Threshold
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.TopHatBox
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.TopHatSphere
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Translate2D
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.Translate3D
getDefaultValues() - Method in class net.haesleinhuepf.clij2.plugins.UndefinedToZero
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Absolute
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.AbsoluteDifference
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.AddImageAndScalar
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.AddImages
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.AddImagesWeighted
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.AdjacencyMatrixToTouchMatrix
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.AffineTransform2D
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.AffineTransform3D
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ApplyVectorField2D
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ApplyVectorField3D
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ArgMaximumZProjection
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.AutomaticThreshold
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfNClosestPoints
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfNFarOffPoints
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfTouchingNeighbors
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.BinaryAnd
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.BinaryEdgeDetection
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.BinaryFillHoles
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.BinaryIntersection
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.BinaryNot
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.BinaryOr
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.BinarySubtract
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.BinaryUnion
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.BinaryXOr
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Blur2D: Deprecated.
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Blur3D: Deprecated.
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Blur3DSliceBySlice: Deprecated.
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.BottomHatBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.BottomHatSphere
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.BoundingBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.CenterOfMass
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.CentroidsOfBackgroundAndLabels
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.CentroidsOfLabels
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Clear
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ClInfo
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.CloseIndexGapsInLabelMap
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ClosingBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ClosingDiamond
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.CombineHorizontally
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.CombineVertically
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ConcatenateStacks
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabeling: Deprecated.
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabelingBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabelingDiamond
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ConvertFloat
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ConvertUInt16
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ConvertUInt8
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Convolve
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Copy
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.CopySlice
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixels
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixels2DSphere
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixelsSliceBySliceSphere
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroVoxels3DSphere
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.CountTouchingNeighbors
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Create2D
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Create3D
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Crop2D
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Crop3D
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.CustomOperation
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.DepthColorProjection
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.DetectLabelEdges
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaxima2DBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaxima3DBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaximaBox: Deprecated.
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaximaSliceBySliceBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinima2DBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinima3DBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinimaBox: Deprecated.
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinimaSliceBySliceBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.DifferenceOfGaussian2D
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.DifferenceOfGaussian3D
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.DilateBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.DilateBoxSliceBySlice
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.DilateSphere
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.DilateSphereSliceBySlice
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.DistanceMap
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.DistanceMatrixToMesh
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.DivideImages
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Downsample2D
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Downsample3D
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.DownsampleSliceBySliceHalfMedian
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.DrawBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.DrawLine
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.DrawSphere
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.EntropyBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Equal
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.EqualConstant
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.EqualizeMeanIntensitiesOfSlices
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ErodeBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ErodeBoxSliceBySlice
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ErodeSphere
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ErodeSphereSliceBySlice
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabels
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsOnEdges
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsOnSurface
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsSubSurface
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsWithValuesOutOfRange
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsWithValuesWithinRange
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Exponential
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ExtendLabelingViaVoronoi
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Flip2D
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Flip3D
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.FloodFillDiamond
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GaussianBlur2D
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GaussianBlur3D
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GenerateBinaryOverlapMatrix
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GenerateDistanceMatrix
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GenerateJaccardIndexMatrix
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GenerateParametricImage
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GenerateParametricImageFromResultsTableColumn
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GenerateTouchCountMatrix
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GenerateTouchMatrix
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GetAutomaticThreshold
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GetBoundingBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GetCenterOfMass
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GetDimensions
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GetGPUProperties
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GetJaccardIndex
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GetMaximumOfAllPixels
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GetMeanOfAllPixels
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GetMeanOfMaskedPixels
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GetMeanSquaredError
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GetMinimumOfAllPixels
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GetSize: Deprecated.
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GetSorensenDiceCoefficient
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GetSumOfAllPixels
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GetTimeTracing
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GPUProperties
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GradientX
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GradientY
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GradientZ
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Greater
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GreaterConstant
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GreaterOrEqual
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.GreaterOrEqualConstant
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Help
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Histogram
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Image2DToResultsTable: Deprecated.
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ImageToStack
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.InvalidateKernelCache
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Invert
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.JaccardIndex
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.LabelCentroidsToPointList
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.LabelledSpotsToPointList
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.LabelSpots
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.LabelToMask
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.LabelVoronoiOctagon
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.LaplaceBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.LaplaceDiamond
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ListAvailableGPUs
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.LocalThreshold
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Logarithm
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Mask
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MaskLabel
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MaskStackWithPlane
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MatrixEqual
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Maximum2DBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Maximum2DSphere
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Maximum3DBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Maximum3DSphere
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MaximumImageAndScalar
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MaximumImages
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MaximumOctagon
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MaximumOfAllPixels
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MaximumOfMaskedPixels
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MaximumOfTouchingNeighbors
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MaximumSliceBySliceSphere
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MaximumXProjection
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MaximumYProjection
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MaximumZProjection
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MaximumZProjectionBounded
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Mean2DBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Mean2DSphere
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Mean3DBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Mean3DSphere
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MeanClosestSpotDistance
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MeanOfAllPixels
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MeanOfMaskedPixels
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MeanOfPixelsAboveThreshold
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MeanOfTouchingNeighbors
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MeanSliceBySliceSphere
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MeanSquaredError
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MeanXProjection
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MeanYProjection
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MeanZProjection
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MeanZProjectionBounded
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Median2DBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Median2DSphere
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Median3DBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Median3DSphere
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MedianOfTouchingNeighbors
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MedianSliceBySliceBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MedianSliceBySliceSphere
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MedianZProjection
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Minimum2DBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Minimum2DSphere
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Minimum3DBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Minimum3DSphere
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MinimumDistanceOfTouchingNeighbors
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MinimumImageAndScalar
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MinimumImages
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MinimumOctagon
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MinimumOfAllPixels
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MinimumOfMaskedPixels
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MinimumOfTouchingNeighbors
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MinimumSliceBySliceSphere
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MinimumXProjection
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MinimumYProjection
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjection
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjectionBounded
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjectionThresholdedBounded
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImageAndCoordinate
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImageAndScalar
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImages
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImageStackWithScalars
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyMatrix
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyStackWithPlane
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.NClosestDistances
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.NClosestPoints
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.NeighborsOfNeighbors
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.NonzeroMaximumBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.NonzeroMaximumDiamond
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.NonzeroMinimumBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.NonzeroMinimumDiamond
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.NotEqual
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.NotEqualConstant
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.OnlyzeroOverwriteMaximumBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.OnlyzeroOverwriteMaximumDiamond
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.OpeningBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.OpeningDiamond
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Paste2D
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Paste3D
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.PointIndexListToMesh
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.PointlistToLabelledSpots
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Power
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.PowerImages
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Print
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Pull
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.PullAsROI
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.PullBinary
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.PullLabelsToROIList
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.PullLabelsToROIManager
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.PullString
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.PullToCurrentSlice
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.PullToCurrentSliceSelection
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.PullToResultsTable
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.PullToROIManager
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Push
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.PushArray
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.PushCurrentSelection
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.PushCurrentSlice
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.PushCurrentSliceSelection
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.PushCurrentZStack
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.PushResultsTable
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.PushResultsTableColumn
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.PushString
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ReduceStack
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Release
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ReplaceIntensities
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ReplaceIntensity
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ReplacePixelsIfZero
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ReportMemory
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Resample
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ResliceBottom
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ResliceLeft
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ResliceRadial
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ResliceRadialTop
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ResliceRight
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ResliceTop
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ResultsTableColumnToImage
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ResultsTableToImage2D: Deprecated.
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Rotate2D
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Rotate3D
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.RotateClockwise
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.RotateCounterClockwise
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SaveAsTIF
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Scale2D
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Scale3D
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Set
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SetColumn
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SetImageBorders
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SetNonZeroPixelsToPixelIndex
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SetPlane
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SetRampX
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SetRampY
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SetRampZ
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SetRandom
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SetRow
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SetWhereXequalsY
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SetWhereXgreaterThanY
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SetWhereXsmallerThanY
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ShortestDistances
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Smaller
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SmallerConstant
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SmallerOrEqual
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SmallerOrEqualConstant
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Sobel
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SorensenDiceCoefficient
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SpotsToPointList
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SquaredDifference
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationOfAllPixels
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationOfMaskedPixels
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationOfTouchingNeighbors
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationZProjection
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.StartTimeTracing
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.StatisticsOfBackgroundAndLabelledPixels
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.StatisticsOfImage
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.StopTimeTracing
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SubtractImageFromScalar
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SubtractImages
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SumImageSliceBySlice
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SumOfAllPixels
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SumXProjection
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SumYProjection
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.SumZProjection
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Threshold
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdDefault
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdHuang
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIJ_IsoData
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIntermodes
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIsoData
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdLi
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMaxEntropy
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMean
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMinError
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMinimum
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMoments
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdOtsu
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdPercentile
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdRenyiEntropy
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdShanbhag
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdTriangle
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdYen
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.TopHatBox
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.TopHatSphere
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.TouchMatrixToAdjacencyMatrix
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.TouchMatrixToMesh
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Translate2D
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Translate3D
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.TransposeXY
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.TransposeXZ
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.TransposeYZ
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.UndefinedToZero
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.VarianceOfAllPixels
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.VarianceOfMaskedPixels
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.VoronoiLabeling
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.VoronoiOctagon
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.Watershed
getDescription() - Method in class net.haesleinhuepf.clij2.plugins.WriteValuesToPositions
getDimensions(ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Reads out the size of an image [stack] and writes it to the variables 'width', 'height' and 'depth'.
getDimensions(CLIJ2, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.GetDimensions
GetDimensions - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf June 2019
GetDimensions() - Constructor for class net.haesleinhuepf.clij2.plugins.GetDimensions
getGPUName() - Method in class net.haesleinhuepf.clij2.CLIJ2
GetGPUProperties - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf September 2019
GetGPUProperties() - Constructor for class net.haesleinhuepf.clij2.plugins.GetGPUProperties
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Absolute
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.AbsoluteDifference
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.AddImageAndScalar
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.AddImages
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.AddImagesWeighted
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.AdjacencyMatrixToTouchMatrix
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.AffineTransform2D
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.AffineTransform3D
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ApplyVectorField2D
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ApplyVectorField3D
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ArgMaximumZProjection
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.AutomaticThreshold
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfNClosestPoints
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfNFarOffPoints
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfTouchingNeighbors
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.BinaryAnd
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.BinaryEdgeDetection
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.BinaryFillHoles
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.BinaryNot
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.BinaryOr
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.BinarySubtract
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.BinaryXOr
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.BottomHatBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.BottomHatSphere
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.CentroidsOfBackgroundAndLabels
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.CentroidsOfLabels
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.CloseIndexGapsInLabelMap
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ClosingBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ClosingDiamond
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.CombineHorizontally
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.CombineVertically
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ConcatenateStacks
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabelingBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabelingDiamond
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ConvertFloat
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ConvertUInt16
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ConvertUInt8
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Convolve
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Copy
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.CopySlice
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixels
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixels2DSphere
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixelsSliceBySliceSphere
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroVoxels3DSphere
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.CountTouchingNeighbors
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Crop2D
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Crop3D
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.DetectLabelEdges
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaxima2DBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaxima3DBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaximaSliceBySliceBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinima2DBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinima3DBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinimaSliceBySliceBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.DifferenceOfGaussian2D
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.DifferenceOfGaussian3D
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.DilateBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.DilateBoxSliceBySlice
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.DilateSphere
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.DilateSphereSliceBySlice
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.DistanceMap
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.DistanceMatrixToMesh
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.DivideImages
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Downsample2D
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Downsample3D
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.DownsampleSliceBySliceHalfMedian
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.EntropyBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Equal
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.EqualConstant
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.EqualizeMeanIntensitiesOfSlices
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ErodeBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ErodeBoxSliceBySlice
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ErodeSphere
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ErodeSphereSliceBySlice
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabels
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsOnEdges
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsOnSurface
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsSubSurface
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsWithValuesOutOfRange
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsWithValuesWithinRange
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Exponential
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ExtendLabelingViaVoronoi
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Flip2D
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Flip3D
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.FloodFillDiamond
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.GaussianBlur2D
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.GaussianBlur3D
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.GenerateBinaryOverlapMatrix
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.GenerateDistanceMatrix
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.GenerateJaccardIndexMatrix
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.GenerateParametricImage
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.GenerateTouchCountMatrix
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.GenerateTouchMatrix
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.GradientX
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.GradientY
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.GradientZ
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Greater
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.GreaterConstant
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.GreaterOrEqual
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.GreaterOrEqualConstant
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Histogram
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ImageToStack
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Invert
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.LabelCentroidsToPointList
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.LabelledSpotsToPointList
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.LabelSpots
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.LabelToMask
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.LabelVoronoiOctagon
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.LaplaceBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.LaplaceDiamond
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.LocalThreshold
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Logarithm
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Mask
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MaskLabel
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MaskStackWithPlane
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Maximum2DBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Maximum2DSphere
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Maximum3DBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Maximum3DSphere
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MaximumImageAndScalar
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MaximumImages
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MaximumOctagon
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MaximumOfTouchingNeighbors
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MaximumSliceBySliceSphere
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MaximumXProjection
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MaximumYProjection
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MaximumZProjection
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MaximumZProjectionBounded
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Mean2DBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Mean2DSphere
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Mean3DBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Mean3DSphere
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MeanOfTouchingNeighbors
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MeanSliceBySliceSphere
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MeanXProjection
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MeanYProjection
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MeanZProjection
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MeanZProjectionBounded
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Median2DBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Median2DSphere
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Median3DBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Median3DSphere
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MedianOfTouchingNeighbors
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MedianSliceBySliceBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MedianSliceBySliceSphere
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MedianZProjection
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Minimum2DBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Minimum2DSphere
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Minimum3DBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Minimum3DSphere
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MinimumDistanceOfTouchingNeighbors
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MinimumImageAndScalar
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MinimumImages
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MinimumOctagon
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MinimumOfTouchingNeighbors
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MinimumSliceBySliceSphere
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MinimumXProjection
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MinimumYProjection
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjection
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjectionBounded
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjectionThresholdedBounded
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImageAndScalar
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImages
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImageStackWithScalars
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyMatrix
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyStackWithPlane
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.NeighborsOfNeighbors
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.NonzeroMaximumBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.NonzeroMaximumDiamond
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.NonzeroMinimumBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.NonzeroMinimumDiamond
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.NotEqual
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.NotEqualConstant
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.OnlyzeroOverwriteMaximumBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.OnlyzeroOverwriteMaximumDiamond
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.OpeningBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.OpeningDiamond
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Paste2D
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Paste3D
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.PointIndexListToMesh
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.PointlistToLabelledSpots
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Power
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.PowerImages
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ReduceStack
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ReplaceIntensities
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ReplaceIntensity
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ReplacePixelsIfZero
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Resample
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ResliceBottom
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ResliceLeft
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ResliceRadial
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ResliceRadialTop
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ResliceRight
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ResliceTop
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Rotate2D
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Rotate3D
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.RotateClockwise
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.RotateCounterClockwise
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Scale2D
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Scale3D
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ShortestDistances
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Smaller
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.SmallerConstant
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.SmallerOrEqual
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.SmallerOrEqualConstant
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Sobel
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.SpotsToPointList
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.SquaredDifference
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationOfTouchingNeighbors
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationZProjection
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.SubtractImageFromScalar
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.SubtractImages
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.SumImageSliceBySlice
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.SumXProjection
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.SumYProjection
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.SumZProjection
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Threshold
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdDefault
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdHuang
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIJ_IsoData
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIntermodes
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIsoData
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdLi
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMaxEntropy
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMean
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMinError
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMinimum
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMoments
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdOtsu
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdPercentile
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdRenyiEntropy
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdShanbhag
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdTriangle
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdYen
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.TopHatBox
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.TopHatSphere
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.TouchMatrixToAdjacencyMatrix
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.TouchMatrixToMesh
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Translate2D
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Translate3D
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.TransposeXY
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.TransposeXZ
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.TransposeYZ
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.UndefinedToZero
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.VoronoiLabeling
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.VoronoiOctagon
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.Watershed
getInputType() - Method in class net.haesleinhuepf.clij2.plugins.WriteValuesToPositions
getInputType() - Method in interface net.haesleinhuepf.clij2.utilities.HasClassifiedInputOutput
getInstance() - Static method in class net.haesleinhuepf.clij2.CLIJ2
getInstance(String) - Static method in class net.haesleinhuepf.clij2.CLIJ2
getJaccardIndex(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the overlap of two binary images using the Jaccard index.
getJaccardIndex(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.GetJaccardIndex
GetJaccardIndex - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
GetJaccardIndex() - Constructor for class net.haesleinhuepf.clij2.plugins.GetJaccardIndex
getLicense() - Method in class net.haesleinhuepf.clij2.plugins.AffineTransform2D
getLicense() - Method in class net.haesleinhuepf.clij2.plugins.AffineTransform3D
getLicense() - Method in class net.haesleinhuepf.clij2.plugins.AutomaticThreshold
getLicense() - Method in class net.haesleinhuepf.clij2.plugins.GetAutomaticThreshold
getLicense() - Method in class net.haesleinhuepf.clij2.plugins.Histogram
getLicense() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdDefault
getLicense() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdHuang
getLicense() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIJ_IsoData
getLicense() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIntermodes
getLicense() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIsoData
getLicense() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdLi
getLicense() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMaxEntropy
getLicense() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMean
getLicense() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMinError
getLicense() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMinimum
getLicense() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMoments
getLicense() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdOtsu
getLicense() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdPercentile
getLicense() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdRenyiEntropy
getLicense() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdShanbhag
getLicense() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdTriangle
getLicense() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdYen
getMaximumOfAllPixels(ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the maximum of all pixels in a given image.
getMaximumOfAllPixels(CLIJ2, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.GetMaximumOfAllPixels
GetMaximumOfAllPixels - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
GetMaximumOfAllPixels() - Constructor for class net.haesleinhuepf.clij2.plugins.GetMaximumOfAllPixels
getMeanOfAllPixels(ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the mean of all pixels in a given image.
getMeanOfAllPixels(CLIJ2, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.GetMeanOfAllPixels
GetMeanOfAllPixels - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
GetMeanOfAllPixels() - Constructor for class net.haesleinhuepf.clij2.plugins.GetMeanOfAllPixels
getMeanOfMaskedPixels(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the mean of all pixels in a given image which have non-zero value in a corresponding mask image.
getMeanOfMaskedPixels(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.GetMeanOfMaskedPixels
GetMeanOfMaskedPixels - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf August 2020
GetMeanOfMaskedPixels() - Constructor for class net.haesleinhuepf.clij2.plugins.GetMeanOfMaskedPixels
getMeanSquaredError(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.GetMeanSquaredError
GetMeanSquaredError - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
GetMeanSquaredError() - Constructor for class net.haesleinhuepf.clij2.plugins.GetMeanSquaredError
getMethods() - Static method in class net.haesleinhuepf.clij2.plugins.AutoThresholderImageJ1
getMinimumOfAllPixels(ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the minimum of all pixels in a given image.
getMinimumOfAllPixels(CLIJ2, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.GetMinimumOfAllPixels
GetMinimumOfAllPixels - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
GetMinimumOfAllPixels() - Constructor for class net.haesleinhuepf.clij2.plugins.GetMinimumOfAllPixels
getNameByClass(Class<? extends AbstractCLIJPlugin>) - Method in class net.haesleinhuepf.clij2.legacy.FallBackCLIJMacroPluginService
getOpenCLVersion() - Method in class net.haesleinhuepf.clij2.CLIJ2
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Absolute
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.AbsoluteDifference
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.AddImageAndScalar
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.AddImages
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.AddImagesWeighted
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.AdjacencyMatrixToTouchMatrix
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.AffineTransform2D
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.AffineTransform3D
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ApplyVectorField2D
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ApplyVectorField3D
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ArgMaximumZProjection
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.AutomaticThreshold
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfNClosestPoints
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfNFarOffPoints
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfTouchingNeighbors
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.BinaryAnd
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.BinaryEdgeDetection
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.BinaryFillHoles
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.BinaryNot
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.BinaryOr
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.BinarySubtract
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.BinaryXOr
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.BottomHatBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.BottomHatSphere
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.CentroidsOfBackgroundAndLabels
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.CentroidsOfLabels
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.CloseIndexGapsInLabelMap
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ClosingBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ClosingDiamond
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.CombineHorizontally
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.CombineVertically
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ConcatenateStacks
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabelingBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabelingDiamond
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ConvertFloat
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ConvertUInt16
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ConvertUInt8
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Convolve
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Copy
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.CopySlice
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixels
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixels2DSphere
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixelsSliceBySliceSphere
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroVoxels3DSphere
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.CountTouchingNeighbors
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Crop2D
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Crop3D
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.DetectLabelEdges
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaxima2DBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaxima3DBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaximaSliceBySliceBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinima2DBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinima3DBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinimaSliceBySliceBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.DifferenceOfGaussian2D
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.DifferenceOfGaussian3D
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.DilateBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.DilateBoxSliceBySlice
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.DilateSphere
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.DilateSphereSliceBySlice
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.DistanceMap
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.DistanceMatrixToMesh
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.DivideImages
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Downsample2D
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Downsample3D
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.DownsampleSliceBySliceHalfMedian
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.EntropyBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Equal
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.EqualConstant
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.EqualizeMeanIntensitiesOfSlices
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ErodeBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ErodeBoxSliceBySlice
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ErodeSphere
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ErodeSphereSliceBySlice
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabels
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsOnEdges
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsOnSurface
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsSubSurface
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsWithValuesOutOfRange
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsWithValuesWithinRange
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Exponential
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ExtendLabelingViaVoronoi
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Flip2D
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Flip3D
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.FloodFillDiamond
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.GaussianBlur2D
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.GaussianBlur3D
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.GenerateBinaryOverlapMatrix
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.GenerateDistanceMatrix
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.GenerateJaccardIndexMatrix
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.GenerateParametricImage
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.GenerateTouchCountMatrix
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.GenerateTouchMatrix
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.GradientX
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.GradientY
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.GradientZ
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Greater
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.GreaterConstant
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.GreaterOrEqual
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.GreaterOrEqualConstant
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Histogram
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ImageToStack
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Invert
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.LabelCentroidsToPointList
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.LabelledSpotsToPointList
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.LabelSpots
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.LabelToMask
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.LabelVoronoiOctagon
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.LaplaceBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.LaplaceDiamond
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.LocalThreshold
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Logarithm
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Mask
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MaskLabel
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MaskStackWithPlane
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Maximum2DBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Maximum2DSphere
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Maximum3DBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Maximum3DSphere
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MaximumImageAndScalar
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MaximumImages
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MaximumOctagon
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MaximumOfTouchingNeighbors
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MaximumSliceBySliceSphere
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MaximumXProjection
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MaximumYProjection
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MaximumZProjection
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MaximumZProjectionBounded
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Mean2DBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Mean2DSphere
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Mean3DBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Mean3DSphere
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MeanOfTouchingNeighbors
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MeanSliceBySliceSphere
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MeanXProjection
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MeanYProjection
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MeanZProjection
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MeanZProjectionBounded
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Median2DBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Median2DSphere
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Median3DBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Median3DSphere
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MedianOfTouchingNeighbors
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MedianSliceBySliceBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MedianSliceBySliceSphere
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MedianZProjection
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Minimum2DBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Minimum2DSphere
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Minimum3DBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Minimum3DSphere
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MinimumDistanceOfTouchingNeighbors
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MinimumImageAndScalar
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MinimumImages
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MinimumOctagon
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MinimumOfTouchingNeighbors
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MinimumSliceBySliceSphere
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MinimumXProjection
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MinimumYProjection
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjection
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjectionBounded
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjectionThresholdedBounded
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImageAndScalar
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImages
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImageStackWithScalars
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyMatrix
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyStackWithPlane
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.NeighborsOfNeighbors
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.NonzeroMaximumBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.NonzeroMaximumDiamond
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.NonzeroMinimumBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.NonzeroMinimumDiamond
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.NotEqual
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.NotEqualConstant
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.OnlyzeroOverwriteMaximumBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.OnlyzeroOverwriteMaximumDiamond
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.OpeningBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.OpeningDiamond
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Paste2D
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Paste3D
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.PointIndexListToMesh
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.PointlistToLabelledSpots
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Power
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.PowerImages
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ReduceStack
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ReplaceIntensities
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ReplaceIntensity
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ReplacePixelsIfZero
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Resample
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ResliceBottom
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ResliceLeft
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ResliceRadial
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ResliceRadialTop
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ResliceRight
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ResliceTop
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Rotate2D
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Rotate3D
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.RotateClockwise
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.RotateCounterClockwise
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Scale2D
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Scale3D
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ShortestDistances
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Smaller
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.SmallerConstant
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.SmallerOrEqual
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.SmallerOrEqualConstant
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Sobel
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.SpotsToPointList
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.SquaredDifference
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationOfTouchingNeighbors
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationZProjection
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.SubtractImageFromScalar
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.SubtractImages
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.SumImageSliceBySlice
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.SumXProjection
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.SumYProjection
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.SumZProjection
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Threshold
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdDefault
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdHuang
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIJ_IsoData
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIntermodes
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIsoData
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdLi
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMaxEntropy
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMean
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMinError
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMinimum
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMoments
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdOtsu
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdPercentile
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdRenyiEntropy
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdShanbhag
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdTriangle
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdYen
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.TopHatBox
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.TopHatSphere
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.TouchMatrixToAdjacencyMatrix
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.TouchMatrixToMesh
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Translate2D
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Translate3D
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.TransposeXY
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.TransposeXZ
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.TransposeYZ
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.UndefinedToZero
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.VoronoiLabeling
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.VoronoiOctagon
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.Watershed
getOutputType() - Method in class net.haesleinhuepf.clij2.plugins.WriteValuesToPositions
getOutputType() - Method in interface net.haesleinhuepf.clij2.utilities.HasClassifiedInputOutput
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Absolute
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.AbsoluteDifference
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.AddImageAndScalar
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.AddImages
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.AddImagesWeighted
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.AdjacencyMatrixToTouchMatrix
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.AffineTransform2D
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.AffineTransform3D
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ApplyVectorField2D
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ApplyVectorField3D
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ArgMaximumZProjection
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.AutomaticThreshold
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfNClosestPoints
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfNFarOffPoints
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.AverageDistanceOfTouchingNeighbors
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.BinaryAnd
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.BinaryEdgeDetection
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.BinaryFillHoles
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.BinaryNot
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.BinaryOr
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.BinarySubtract
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.BinaryXOr
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Blur3DSliceBySlice: Deprecated.
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.BottomHatBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.BottomHatSphere
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.BoundingBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.CenterOfMass
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.CentroidsOfBackgroundAndLabels
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.CentroidsOfLabels
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Clear
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ClInfo
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.CloseIndexGapsInLabelMap
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ClosingBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ClosingDiamond
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.CombineHorizontally
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.CombineVertically
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ConcatenateStacks
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabeling: Deprecated.
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ConvertFloat
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ConvertUInt16
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ConvertUInt8
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Convolve
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Copy
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.CopySlice
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixels
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixels2DSphere
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroPixelsSliceBySliceSphere
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.CountNonZeroVoxels3DSphere
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.CountTouchingNeighbors
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Create2D
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Create3D
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Crop2D
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Crop3D
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.CustomOperation
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.DepthColorProjection
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.DetectLabelEdges
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaxima2DBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaxima3DBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaximaBox: Deprecated.
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.DetectMaximaSliceBySliceBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinima2DBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinima3DBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinimaBox: Deprecated.
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.DetectMinimaSliceBySliceBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.DifferenceOfGaussian2D
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.DifferenceOfGaussian3D
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.DilateBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.DilateBoxSliceBySlice
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.DilateSphere
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.DilateSphereSliceBySlice
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.DistanceMap
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.DistanceMatrixToMesh
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.DivideImages
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Downsample2D
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Downsample3D
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.DownsampleSliceBySliceHalfMedian
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.DrawBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.DrawLine
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.DrawSphere
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.EntropyBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Equal
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.EqualConstant
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.EqualizeMeanIntensitiesOfSlices
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ErodeBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ErodeBoxSliceBySlice
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ErodeSphere
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ErodeSphereSliceBySlice
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabels
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsOnEdges
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsOnSurface
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsSubSurface
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsWithValuesOutOfRange
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ExcludeLabelsWithValuesWithinRange
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Exponential
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ExtendLabelingViaVoronoi
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Flip2D
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Flip3D
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.FloodFillDiamond
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GaussianBlur2D
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GaussianBlur3D
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GenerateBinaryOverlapMatrix
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GenerateDistanceMatrix
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GenerateJaccardIndexMatrix
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GenerateParametricImage
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GenerateParametricImageFromResultsTableColumn
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GenerateTouchCountMatrix
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GenerateTouchMatrix
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GetAutomaticThreshold
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GetBoundingBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GetCenterOfMass
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GetDimensions
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GetGPUProperties
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GetJaccardIndex
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GetMaximumOfAllPixels
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GetMeanOfAllPixels
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GetMeanOfMaskedPixels
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GetMeanSquaredError
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GetMinimumOfAllPixels
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GetSize: Deprecated.
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GetSorensenDiceCoefficient
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GetSumOfAllPixels
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GetTimeTracing
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GPUProperties
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GradientX
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GradientY
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GradientZ
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Greater
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GreaterConstant
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GreaterOrEqual
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.GreaterOrEqualConstant
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Help
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Histogram
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Image2DToResultsTable: Deprecated.
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ImageToStack
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.InvalidateKernelCache
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Invert
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.JaccardIndex
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.LabelCentroidsToPointList
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.LabelledSpotsToPointList
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.LabelSpots
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.LabelToMask
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.LabelVoronoiOctagon
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.LaplaceBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.LaplaceDiamond
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ListAvailableGPUs
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.LocalThreshold
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Logarithm
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Mask
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MaskLabel
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MaskStackWithPlane
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MatrixEqual
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Maximum2DBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Maximum2DSphere
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Maximum3DBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Maximum3DSphere
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MaximumImageAndScalar
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MaximumImages
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MaximumOctagon
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MaximumOfAllPixels
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MaximumOfMaskedPixels
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MaximumOfTouchingNeighbors
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MaximumSliceBySliceSphere
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MaximumXProjection
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MaximumYProjection
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MaximumZProjection
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MaximumZProjectionBounded
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Mean2DBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Mean2DSphere
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Mean3DBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Mean3DSphere
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MeanClosestSpotDistance
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MeanOfAllPixels
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MeanOfMaskedPixels
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MeanOfPixelsAboveThreshold
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MeanOfTouchingNeighbors
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MeanSliceBySliceSphere
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MeanSquaredError
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MeanXProjection
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MeanYProjection
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MeanZProjection
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MeanZProjectionBounded
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Median2DBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Median2DSphere
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Median3DBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Median3DSphere
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MedianOfTouchingNeighbors
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MedianSliceBySliceBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MedianSliceBySliceSphere
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MedianZProjection
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Minimum2DBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Minimum2DSphere
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Minimum3DBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Minimum3DSphere
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MinimumDistanceOfTouchingNeighbors
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MinimumImageAndScalar
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MinimumImages
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MinimumOctagon
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MinimumOfAllPixels
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MinimumOfMaskedPixels
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MinimumOfTouchingNeighbors
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MinimumSliceBySliceSphere
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MinimumXProjection
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MinimumYProjection
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjection
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjectionBounded
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MinimumZProjectionThresholdedBounded
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImageAndCoordinate
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImageAndScalar
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImages
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyImageStackWithScalars
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyMatrix
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.MultiplyStackWithPlane
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.NClosestDistances
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.NClosestPoints
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.NeighborsOfNeighbors
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.NonzeroMaximumBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.NonzeroMaximumDiamond
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.NonzeroMinimumBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.NonzeroMinimumDiamond
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.NotEqual
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.NotEqualConstant
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.OnlyzeroOverwriteMaximumBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.OnlyzeroOverwriteMaximumDiamond
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.OpeningBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.OpeningDiamond
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Paste2D
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Paste3D
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.PointIndexListToMesh
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.PointlistToLabelledSpots
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Power
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.PowerImages
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Print
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Pull
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.PullAsROI
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.PullBinary
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.PullLabelsToROIList
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.PullLabelsToROIManager
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.PullString
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.PullToCurrentSlice
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.PullToCurrentSliceSelection
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.PullToResultsTable
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.PullToROIManager
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Push
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.PushArray
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.PushCurrentSelection
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.PushCurrentSlice
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.PushCurrentSliceSelection
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.PushCurrentZStack
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.PushResultsTable
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.PushResultsTableColumn
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.PushString
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ReduceStack
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Release
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ReplaceIntensities
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ReplaceIntensity
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ReplacePixelsIfZero
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ReportMemory
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Resample
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ResliceBottom
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ResliceLeft
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ResliceRadial
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ResliceRadialTop
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ResliceRight
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ResliceTop
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ResultsTableColumnToImage
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ResultsTableToImage2D: Deprecated.
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Rotate2D
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Rotate3D
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.RotateClockwise
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.RotateCounterClockwise
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SaveAsTIF
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Scale2D
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Scale3D
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Set
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SetColumn
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SetImageBorders
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SetNonZeroPixelsToPixelIndex
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SetPlane
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SetRampX
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SetRampY
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SetRampZ
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SetRandom
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SetRow
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SetWhereXequalsY
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SetWhereXgreaterThanY
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SetWhereXsmallerThanY
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ShortestDistances
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Smaller
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SmallerConstant
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SmallerOrEqual
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SmallerOrEqualConstant
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Sobel
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SorensenDiceCoefficient
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SpotsToPointList
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SquaredDifference
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationOfAllPixels
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationOfMaskedPixels
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationOfTouchingNeighbors
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.StandardDeviationZProjection
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.StartTimeTracing
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.StatisticsOfBackgroundAndLabelledPixels
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.StatisticsOfImage
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.StopTimeTracing
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SubtractImageFromScalar
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SubtractImages
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SumImageSliceBySlice
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SumOfAllPixels
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SumXProjection
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SumYProjection
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.SumZProjection
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Threshold
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdDefault
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdHuang
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIJ_IsoData
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIntermodes
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdIsoData
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdLi
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMaxEntropy
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMean
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMinError
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMinimum
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdMoments
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdOtsu
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdPercentile
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdRenyiEntropy
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdShanbhag
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdTriangle
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.ThresholdYen
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.TopHatBox
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.TopHatSphere
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.TouchMatrixToAdjacencyMatrix
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.TouchMatrixToMesh
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Translate2D
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Translate3D
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.TransposeXY
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.TransposeXZ
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.TransposeYZ
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.UndefinedToZero
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.VarianceOfAllPixels
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.VarianceOfMaskedPixels
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.VoronoiLabeling
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.VoronoiOctagon
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.Watershed
getParameterHelpText() - Method in class net.haesleinhuepf.clij2.plugins.WriteValuesToPositions
getPluginExtensionDescriptor(String) - Method in class net.haesleinhuepf.clij2.legacy.FallBackCLIJMacroPluginService
getPluginType() - Method in class net.haesleinhuepf.clij2.legacy.FallBackCLIJMacroPluginService
getSize(ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
getSize(CLIJ2, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.GetSize: Deprecated.
GetSize - Class in net.haesleinhuepf.clij2.plugins: Deprecated.
GetSize() - Constructor for class net.haesleinhuepf.clij2.plugins.GetSize: Deprecated.
getSorensenDiceCoefficient(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the overlap of two binary images using the Sorensen-Dice coefficent.
getSorensenDiceCoefficient(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.GetSorensenDiceCoefficient
GetSorensenDiceCoefficient - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
GetSorensenDiceCoefficient() - Constructor for class net.haesleinhuepf.clij2.plugins.GetSorensenDiceCoefficient
getSourceType() - Method in class net.haesleinhuepf.clij2.converters.implementations.Byte1ToClearCLBufferConverter
getSourceType() - Method in class net.haesleinhuepf.clij2.converters.implementations.Byte2ToClearCLBufferConverter
getSourceType() - Method in class net.haesleinhuepf.clij2.converters.implementations.Byte3ToClearCLBufferConverter
getSourceType() - Method in class net.haesleinhuepf.clij2.converters.implementations.Char1ToClearCLBufferConverter
getSourceType() - Method in class net.haesleinhuepf.clij2.converters.implementations.Char2ToClearCLBufferConverter
getSourceType() - Method in class net.haesleinhuepf.clij2.converters.implementations.Char3ToClearCLBufferConverter
getSourceType() - Method in class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToByte2Converter
getSourceType() - Method in class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToByte3Converter
getSourceType() - Method in class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToChar2Converter
getSourceType() - Method in class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToChar3Converter
getSourceType() - Method in class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToDouble2Converter
getSourceType() - Method in class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToDouble3Converter
getSourceType() - Method in class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToFloat2Converter
getSourceType() - Method in class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToFloat3Converter
getSourceType() - Method in class net.haesleinhuepf.clij2.converters.implementations.Double1ToClearCLBufferConverter
getSourceType() - Method in class net.haesleinhuepf.clij2.converters.implementations.Double2ToClearCLBufferConverter
getSourceType() - Method in class net.haesleinhuepf.clij2.converters.implementations.Double3ToClearCLBufferConverter
getSourceType() - Method in class net.haesleinhuepf.clij2.converters.implementations.Float1ToClearCLBufferConverter
getSourceType() - Method in class net.haesleinhuepf.clij2.converters.implementations.Float2ToClearCLBufferConverter
getSourceType() - Method in class net.haesleinhuepf.clij2.converters.implementations.Float3ToClearCLBufferConverter
getSumOfAllPixels(ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the sum of all pixels in a given image.
getSumOfAllPixels(CLIJ2, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.GetSumOfAllPixels
GetSumOfAllPixels - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
GetSumOfAllPixels() - Constructor for class net.haesleinhuepf.clij2.plugins.GetSumOfAllPixels
getTargetType() - Method in class net.haesleinhuepf.clij2.converters.implementations.Byte1ToClearCLBufferConverter
getTargetType() - Method in class net.haesleinhuepf.clij2.converters.implementations.Byte2ToClearCLBufferConverter
getTargetType() - Method in class net.haesleinhuepf.clij2.converters.implementations.Byte3ToClearCLBufferConverter
getTargetType() - Method in class net.haesleinhuepf.clij2.converters.implementations.Char1ToClearCLBufferConverter
getTargetType() - Method in class net.haesleinhuepf.clij2.converters.implementations.Char2ToClearCLBufferConverter
getTargetType() - Method in class net.haesleinhuepf.clij2.converters.implementations.Char3ToClearCLBufferConverter
getTargetType() - Method in class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToByte2Converter
getTargetType() - Method in class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToByte3Converter
getTargetType() - Method in class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToChar2Converter
getTargetType() - Method in class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToChar3Converter
getTargetType() - Method in class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToDouble2Converter
getTargetType() - Method in class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToDouble3Converter
getTargetType() - Method in class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToFloat2Converter
getTargetType() - Method in class net.haesleinhuepf.clij2.converters.implementations.ClearCLBufferToFloat3Converter
getTargetType() - Method in class net.haesleinhuepf.clij2.converters.implementations.Double1ToClearCLBufferConverter
getTargetType() - Method in class net.haesleinhuepf.clij2.converters.implementations.Double2ToClearCLBufferConverter
getTargetType() - Method in class net.haesleinhuepf.clij2.converters.implementations.Double3ToClearCLBufferConverter
getTargetType() - Method in class net.haesleinhuepf.clij2.converters.implementations.Float1ToClearCLBufferConverter
getTargetType() - Method in class net.haesleinhuepf.clij2.converters.implementations.Float2ToClearCLBufferConverter
getTargetType() - Method in class net.haesleinhuepf.clij2.converters.implementations.Float3ToClearCLBufferConverter
getThreshold(AutoThresholder.Method, int[]) - Method in class net.haesleinhuepf.clij2.plugins.AutoThresholderImageJ1: Calculates and returns a threshold using the specified method and 256 bin histogram.
getThreshold(String, int[]) - Method in class net.haesleinhuepf.clij2.plugins.AutoThresholderImageJ1
getTimeTraces() - Method in class net.haesleinhuepf.clij2.CLIJ2
GetTimeTracing - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
GetTimeTracing() - Constructor for class net.haesleinhuepf.clij2.plugins.GetTimeTracing
GPUProperties - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
GPUProperties() - Constructor for class net.haesleinhuepf.clij2.plugins.GPUProperties
gradientX(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the gradient of gray values along X.
gradientX(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.GradientX
GradientX - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
GradientX() - Constructor for class net.haesleinhuepf.clij2.plugins.GradientX
gradientY(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the gradient of gray values along Y.
gradientY(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.GradientY
GradientY - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
GradientY() - Constructor for class net.haesleinhuepf.clij2.plugins.GradientY
gradientZ(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the gradient of gray values along Z.
gradientZ(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.GradientZ
GradientZ - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
GradientZ() - Constructor for class net.haesleinhuepf.clij2.plugins.GradientZ
greater(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines if two images A and B greater pixel wise.
greater(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.Greater
Greater - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf August 2019
Greater() - Constructor for class net.haesleinhuepf.clij2.plugins.Greater
greaterConstant(ClearCLImageInterface, ClearCLImageInterface, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines if two images A and B greater pixel wise.
greaterConstant(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float) - Static method in class net.haesleinhuepf.clij2.plugins.GreaterConstant
GreaterConstant - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf August 2019
GreaterConstant() - Constructor for class net.haesleinhuepf.clij2.plugins.GreaterConstant
greaterOrEqual(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines if two images A and B greater or equal pixel wise.
greaterOrEqual(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.GreaterOrEqual
GreaterOrEqual - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf August 2019
GreaterOrEqual() - Constructor for class net.haesleinhuepf.clij2.plugins.GreaterOrEqual
greaterOrEqualConstant(ClearCLImageInterface, ClearCLImageInterface, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines if two images A and B greater or equal pixel wise.
greaterOrEqualConstant(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float) - Static method in class net.haesleinhuepf.clij2.plugins.GreaterOrEqualConstant
GreaterOrEqualConstant - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf August 2019
GreaterOrEqualConstant() - Constructor for class net.haesleinhuepf.clij2.plugins.GreaterOrEqualConstant

H

HasClassifiedInputOutput - Interface in net.haesleinhuepf.clij2.utilities
hasImageSupport() - Method in class net.haesleinhuepf.clij2.CLIJ2
Help - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Help() - Constructor for class net.haesleinhuepf.clij2.plugins.Help
histogram(ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the histogram of a given image.
histogram(ClearCLBuffer, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the histogram of a given image.
histogram(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the histogram of a given image.
histogram(ClearCLBuffer, ClearCLBuffer, double, double, double, boolean) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the histogram of a given image.
histogram(ClearCLBuffer, ClearCLBuffer, double, double, double, boolean, boolean) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the histogram of a given image.
histogram(CLIJ2, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.Histogram
histogram(CLIJ2, ClearCLBuffer, Float, Float, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Histogram
histogram(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.Histogram
histogram(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Float, Float, Boolean) - Static method in class net.haesleinhuepf.clij2.plugins.Histogram
histogram(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Float, Float, Boolean, boolean) - Static method in class net.haesleinhuepf.clij2.plugins.Histogram
Histogram - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2019
Histogram() - Constructor for class net.haesleinhuepf.clij2.plugins.Histogram
Huang - net.haesleinhuepf.clij2.plugins.AutoThresholderImageJ1.Method

I

IDENTIFIER - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
IJ_IsoData - net.haesleinhuepf.clij2.plugins.AutoThresholderImageJ1.Method
image2DToResultsTable(ClearCLBuffer, ResultsTable) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
image2DToResultsTable(ClearCLImage, ResultsTable) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
image2DToResultsTable(CLIJ2, ClearCLBuffer, ResultsTable) - Static method in class net.haesleinhuepf.clij2.plugins.Image2DToResultsTable: Deprecated.
image2DToResultsTable(CLIJ2, ClearCLImage, ResultsTable) - Static method in class net.haesleinhuepf.clij2.plugins.Image2DToResultsTable: Deprecated.
Image2DToResultsTable - Class in net.haesleinhuepf.clij2.plugins: Deprecated.
Image2DToResultsTable() - Constructor for class net.haesleinhuepf.clij2.plugins.Image2DToResultsTable: Deprecated.
imageToStack(ClearCLBuffer, ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Copies a single slice into a stack a given number of times.
imageToStack(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.ImageToStack
ImageToStack - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf February 2020
ImageToStack() - Constructor for class net.haesleinhuepf.clij2.plugins.ImageToStack
initialize() - Method in class net.haesleinhuepf.clij2.legacy.FallBackCLIJMacroPluginService
initialize(FallBackCLIJMacroPluginService) - Static method in class net.haesleinhuepf.clij2.legacy.FallBackCLIJMacroPluginServiceInitializer
Intermodes - net.haesleinhuepf.clij2.plugins.AutoThresholderImageJ1.Method
InvalidateKernelCache - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
InvalidateKernelCache() - Constructor for class net.haesleinhuepf.clij2.plugins.InvalidateKernelCache
invalidateKernelCahe() - Method in class net.haesleinhuepf.clij2.CLIJ2
invert(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the negative value of all pixels in a given image.
invert(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.Invert
Invert - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Invert() - Constructor for class net.haesleinhuepf.clij2.plugins.Invert
IsoData - net.haesleinhuepf.clij2.plugins.AutoThresholderImageJ1.Method
isSizeIndependentKernelCompilation() - Method in class net.haesleinhuepf.clij2.CLIJ2

J

jaccardIndex(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the overlap of two binary images using the Jaccard index.
jaccardIndex(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.JaccardIndex
JaccardIndex - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf July 2019
JaccardIndex() - Constructor for class net.haesleinhuepf.clij2.plugins.JaccardIndex

L

labelCentroidsToPointList(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.LabelCentroidsToPointList
LabelCentroidsToPointList - Class in net.haesleinhuepf.clij2.plugins
LabelCentroidsToPointList() - Constructor for class net.haesleinhuepf.clij2.plugins.LabelCentroidsToPointList
labelledSpotsToPointList(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Generates a coordinate list of points in a labelled spot image.
labelledSpotsToPointList(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.LabelledSpotsToPointList
LabelledSpotsToPointList - Class in net.haesleinhuepf.clij2.plugins
LabelledSpotsToPointList() - Constructor for class net.haesleinhuepf.clij2.plugins.LabelledSpotsToPointList
labelSpots(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Transforms a binary image with single pixles set to 1 to a labelled spots image.
labelSpots(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.LabelSpots
LabelSpots - Class in net.haesleinhuepf.clij2.plugins
LabelSpots() - Constructor for class net.haesleinhuepf.clij2.plugins.LabelSpots
labelToMask(ClearCLBuffer, ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Masks a single label in a label map.
labelToMask(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float) - Static method in class net.haesleinhuepf.clij2.plugins.LabelToMask
LabelToMask - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf August 2019
LabelToMask() - Constructor for class net.haesleinhuepf.clij2.plugins.LabelToMask
labelVoronoiOctagon(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Takes a labelled image and dilates the labels using a octagon shape until they touch.
labelVoronoiOctagon(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.LabelVoronoiOctagon
LabelVoronoiOctagon - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
LabelVoronoiOctagon() - Constructor for class net.haesleinhuepf.clij2.plugins.LabelVoronoiOctagon
laplaceBox(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Applies the Laplace operator (Box neighborhood) to an image.
laplaceBox(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.LaplaceBox
LaplaceBox - Class in net.haesleinhuepf.clij2.plugins
LaplaceBox() - Constructor for class net.haesleinhuepf.clij2.plugins.LaplaceBox
LaplaceDiamond - Class in net.haesleinhuepf.clij2.plugins
LaplaceDiamond() - Constructor for class net.haesleinhuepf.clij2.plugins.LaplaceDiamond
laplaceSphere(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Applies the Laplace operator (Diamond neighborhood) to an image.
laplaceSphere(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.LaplaceDiamond
Li - net.haesleinhuepf.clij2.plugins.AutoThresholderImageJ1.Method
ListAvailableGPUs - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf September 2019
ListAvailableGPUs() - Constructor for class net.haesleinhuepf.clij2.plugins.ListAvailableGPUs
localThreshold(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes a binary image with pixel values 0 and 1 depending on if a pixel value x in image X was above of equal to the pixel value m in mask image M.
localThreshold(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.LocalThreshold
LocalThreshold - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
LocalThreshold() - Constructor for class net.haesleinhuepf.clij2.plugins.LocalThreshold
logarithm(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes base e logarithm of all pixels values.
logarithm(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.Logarithm
Logarithm - Class in net.haesleinhuepf.clij2.plugins: Based on net.haesleinhuepf.clij.macro.modules.Power.java Author: @haesleinhuepf December 2018 modified by: @phaub July 2019
Logarithm() - Constructor for class net.haesleinhuepf.clij2.plugins.Logarithm

M

main(String[]) - Static method in class net.haesleinhuepf.clij2.plugins.Copy
main(String[]) - Static method in class net.haesleinhuepf.clij2.plugins.LabelCentroidsToPointList
mask(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes a masked image by applying a binary mask to an image.
mask(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.Mask
Mask - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Mask() - Constructor for class net.haesleinhuepf.clij2.plugins.Mask
maskLabel(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes a masked image by applying a label mask to an image.
maskLabel(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer, Float) - Static method in class net.haesleinhuepf.clij2.plugins.MaskLabel
MaskLabel - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
MaskLabel() - Constructor for class net.haesleinhuepf.clij2.plugins.MaskLabel
maskStackWithPlane(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes a masked image by applying a binary 2D mask to an image stack.
maskStackWithPlane(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.MaskStackWithPlane
MaskStackWithPlane - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
MaskStackWithPlane() - Constructor for class net.haesleinhuepf.clij2.plugins.MaskStackWithPlane
MASS_CENTER_X - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
MASS_CENTER_Y - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
MASS_CENTER_Z - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
matrixEqual(ClearCLBuffer, ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Checks if all elements of a matrix are different by less than or equal to a given tolerance.
matrixEqual(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float) - Static method in class net.haesleinhuepf.clij2.plugins.MatrixEqual
MatrixEqual - Class in net.haesleinhuepf.clij2.plugins
MatrixEqual() - Constructor for class net.haesleinhuepf.clij2.plugins.MatrixEqual
MAX_DISTANCE_TO_CENTROID - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
MAX_DISTANCE_TO_MASS_CENTER - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
MAX_MEAN_DISTANCE_TO_CENTROID_RATIO - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
MAX_MEAN_DISTANCE_TO_MASS_CENTER_RATIO - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
MaxEntropy - net.haesleinhuepf.clij2.plugins.AutoThresholderImageJ1.Method
MAXIMUM_INTENSITY - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
maximum2DBox(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local maximum of a pixels rectangular neighborhood.
maximum2DBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Maximum2DBox
Maximum2DBox - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Maximum2DBox() - Constructor for class net.haesleinhuepf.clij2.plugins.Maximum2DBox
maximum2DSphere(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local maximum of a pixels ellipsoidal neighborhood.
maximum2DSphere(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Maximum2DSphere
Maximum2DSphere - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Maximum2DSphere() - Constructor for class net.haesleinhuepf.clij2.plugins.Maximum2DSphere
maximum3DBox(ClearCLImageInterface, ClearCLImageInterface, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local maximum of a pixels cube neighborhood.
maximum3DBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Maximum3DBox
Maximum3DBox - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Maximum3DBox() - Constructor for class net.haesleinhuepf.clij2.plugins.Maximum3DBox
maximum3DSliceBySliceSphere(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local maximum of a pixels ellipsoidal 2D neighborhood in an image stack slice by slice.
maximum3DSliceBySliceSphere(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.MaximumSliceBySliceSphere
maximum3DSphere(ClearCLImageInterface, ClearCLImageInterface, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local maximum of a pixels spherical neighborhood.
maximum3DSphere(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Maximum3DSphere
Maximum3DSphere - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Maximum3DSphere() - Constructor for class net.haesleinhuepf.clij2.plugins.Maximum3DSphere
maximumBox(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local maximum of a pixels rectangular neighborhood.
maximumBox(ClearCLImageInterface, ClearCLImageInterface, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local maximum of a pixels rectangular neighborhood.
maximumBox(ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
maximumBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Maximum2DBox
maximumBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Maximum3DBox
maximumBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel) - Static method in class net.haesleinhuepf.clij2.plugins.MaximumOctagon: Deprecated.
maximumDiamond(ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
maximumDiamond(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel) - Static method in class net.haesleinhuepf.clij2.plugins.MaximumOctagon: Deprecated.
maximumImageAndScalar(ClearCLImageInterface, ClearCLImageInterface, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the maximum of a constant scalar s and each pixel value x in a given image X.
maximumImageAndScalar(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float) - Static method in class net.haesleinhuepf.clij2.plugins.MaximumImageAndScalar
MaximumImageAndScalar - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
MaximumImageAndScalar() - Constructor for class net.haesleinhuepf.clij2.plugins.MaximumImageAndScalar
maximumImages(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the maximum of a pair of pixel values x, y from two given images X and Y.
maximumImages(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.MaximumImages
MaximumImages - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
MaximumImages() - Constructor for class net.haesleinhuepf.clij2.plugins.MaximumImages
maximumOctagon(ClearCLBuffer, ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Applies a maximum filter with kernel size 3x3 n times to an image iteratively.
maximumOctagon(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.MaximumOctagon
MaximumOctagon - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2019
MaximumOctagon() - Constructor for class net.haesleinhuepf.clij2.plugins.MaximumOctagon
maximumOfAllPixels(ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the maximum of all pixels in a given image.
maximumOfAllPixels(CLIJ2, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.MaximumOfAllPixels
MaximumOfAllPixels - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
MaximumOfAllPixels() - Constructor for class net.haesleinhuepf.clij2.plugins.MaximumOfAllPixels
maximumOfMaskedPixels(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the maximum intensity in an image, but only in pixels which have non-zero values in another mask image.
maximumOfMaskedPixels(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.MaximumOfMaskedPixels
MaximumOfMaskedPixels - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
MaximumOfMaskedPixels() - Constructor for class net.haesleinhuepf.clij2.plugins.MaximumOfMaskedPixels
maximumOfTouchingNeighbors(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Takes a touch matrix and a vector of values to determine the maximum value among touching neighbors for every object.
maximumOfTouchingNeighbors(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.MaximumOfTouchingNeighbors
MaximumOfTouchingNeighbors - Class in net.haesleinhuepf.clij2.plugins
MaximumOfTouchingNeighbors() - Constructor for class net.haesleinhuepf.clij2.plugins.MaximumOfTouchingNeighbors
MaximumSliceBySliceSphere - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
MaximumSliceBySliceSphere() - Constructor for class net.haesleinhuepf.clij2.plugins.MaximumSliceBySliceSphere
maximumXProjection(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the maximum intensity projection of an image along X.
maximumXProjection(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.MaximumXProjection
MaximumXProjection - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
MaximumXProjection() - Constructor for class net.haesleinhuepf.clij2.plugins.MaximumXProjection
maximumYProjection(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the maximum intensity projection of an image along X.
maximumYProjection(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.MaximumYProjection
MaximumYProjection - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
MaximumYProjection() - Constructor for class net.haesleinhuepf.clij2.plugins.MaximumYProjection
maximumZProjection(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the maximum intensity projection of an image along Z.
maximumZProjection(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.MaximumZProjection
MaximumZProjection - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
MaximumZProjection() - Constructor for class net.haesleinhuepf.clij2.plugins.MaximumZProjection
maximumZProjectionBounded(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the maximum intensity projection of an image along Z within a given z range.
maximumZProjectionBounded(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.MaximumZProjectionBounded
MaximumZProjectionBounded - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2019
MaximumZProjectionBounded() - Constructor for class net.haesleinhuepf.clij2.plugins.MaximumZProjectionBounded
mCLKernelExecutor - Variable in class net.haesleinhuepf.clij2.CLIJ2
Mean - net.haesleinhuepf.clij2.plugins.AutoThresholderImageJ1.Method
MEAN_DISTANCE_TO_CENTROID - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
MEAN_DISTANCE_TO_MASS_CENTER - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
MEAN_INTENSITY - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
mean2DBox(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local mean average of a pixels rectangular neighborhood.
mean2DBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Mean2DBox
Mean2DBox - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Mean2DBox() - Constructor for class net.haesleinhuepf.clij2.plugins.Mean2DBox
mean2DSphere(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local mean average of a pixels ellipsoidal neighborhood.
mean2DSphere(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Mean2DSphere
Mean2DSphere - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
Mean2DSphere() - Constructor for class net.haesleinhuepf.clij2.plugins.Mean2DSphere
mean3DBox(ClearCLImageInterface, ClearCLImageInterface, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local mean average of a pixels cube neighborhood.
mean3DBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Mean3DBox
Mean3DBox - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Mean3DBox() - Constructor for class net.haesleinhuepf.clij2.plugins.Mean3DBox
mean3DSphere(ClearCLImageInterface, ClearCLImageInterface, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local mean average of a pixels spherical neighborhood.
mean3DSphere(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Mean3DSphere
Mean3DSphere - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Mean3DSphere() - Constructor for class net.haesleinhuepf.clij2.plugins.Mean3DSphere
meanBox(ClearCLImageInterface, ClearCLImageInterface, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local mean average of a pixels rectangular neighborhood.
meanBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Mean3DBox
meanClosestSpotDistance(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the distance between pairs of closest spots in two binary images.
meanClosestSpotDistance(ClearCLBuffer, ClearCLBuffer, boolean) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the distance between pairs of closest spots in two binary images.
meanClosestSpotDistance(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.MeanClosestSpotDistance
meanClosestSpotDistance(CLIJ2, ClearCLBuffer, ClearCLBuffer, Boolean) - Static method in class net.haesleinhuepf.clij2.plugins.MeanClosestSpotDistance
MeanClosestSpotDistance - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf July 2019
MeanClosestSpotDistance() - Constructor for class net.haesleinhuepf.clij2.plugins.MeanClosestSpotDistance
meanOfAllPixels(ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the mean average of all pixels in a given image.
meanOfAllPixels(CLIJ2, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.MeanOfAllPixels
MeanOfAllPixels - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
MeanOfAllPixels() - Constructor for class net.haesleinhuepf.clij2.plugins.MeanOfAllPixels
meanOfMaskedPixels(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the mean intensity in a masked image.
meanOfMaskedPixels(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.MeanOfMaskedPixels
MeanOfMaskedPixels - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
MeanOfMaskedPixels() - Constructor for class net.haesleinhuepf.clij2.plugins.MeanOfMaskedPixels
meanOfPixelsAboveThreshold(ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the mean intensity in a threshleded image.
meanOfPixelsAboveThreshold(CLIJ2, ClearCLBuffer, Float) - Static method in class net.haesleinhuepf.clij2.plugins.MeanOfPixelsAboveThreshold
MeanOfPixelsAboveThreshold - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
MeanOfPixelsAboveThreshold() - Constructor for class net.haesleinhuepf.clij2.plugins.MeanOfPixelsAboveThreshold
meanOfTouchingNeighbors(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Takes a touch matrix and a vector of values to determine the mean value among touching neighbors for every object.
meanOfTouchingNeighbors(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.MeanOfTouchingNeighbors
MeanOfTouchingNeighbors - Class in net.haesleinhuepf.clij2.plugins
MeanOfTouchingNeighbors() - Constructor for class net.haesleinhuepf.clij2.plugins.MeanOfTouchingNeighbors
meanSliceBySliceSphere(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local mean average of a pixels ellipsoidal 2D neighborhood in an image stack slice by slice.
meanSliceBySliceSphere(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.MeanSliceBySliceSphere
MeanSliceBySliceSphere - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
MeanSliceBySliceSphere() - Constructor for class net.haesleinhuepf.clij2.plugins.MeanSliceBySliceSphere
meanSquaredError(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the mean squared error (MSE) between two images.
meanSquaredError(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.MeanSquaredError
MeanSquaredError - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
MeanSquaredError() - Constructor for class net.haesleinhuepf.clij2.plugins.MeanSquaredError
meanXProjection(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the mean average intensity projection of an image along X.
meanXProjection(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.MeanXProjection
MeanXProjection - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf June 2020
MeanXProjection() - Constructor for class net.haesleinhuepf.clij2.plugins.MeanXProjection
meanYProjection(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the mean average intensity projection of an image along Y.
meanYProjection(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.MeanYProjection
MeanYProjection - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf June 2020
MeanYProjection() - Constructor for class net.haesleinhuepf.clij2.plugins.MeanYProjection
meanZProjection(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the mean average intensity projection of an image along Z.
meanZProjection(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.MeanZProjection
MeanZProjection - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
MeanZProjection() - Constructor for class net.haesleinhuepf.clij2.plugins.MeanZProjection
meanZProjectionBounded(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the mean average intensity projection of an image along Z within a given z range.
meanZProjectionBounded(CLIJ, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.MeanZProjectionBounded
MeanZProjectionBounded - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2019
MeanZProjectionBounded() - Constructor for class net.haesleinhuepf.clij2.plugins.MeanZProjectionBounded
median2DBox(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local median of a pixels rectangular neighborhood.
median2DBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Median2DBox
Median2DBox - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Median2DBox() - Constructor for class net.haesleinhuepf.clij2.plugins.Median2DBox
median2DSphere(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local median of a pixels ellipsoidal neighborhood.
median2DSphere(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Median2DSphere
Median2DSphere - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Median2DSphere() - Constructor for class net.haesleinhuepf.clij2.plugins.Median2DSphere
median3DBox(ClearCLImageInterface, ClearCLImageInterface, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local median of a pixels cuboid neighborhood.
median3DBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Median3DBox
Median3DBox - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Median3DBox() - Constructor for class net.haesleinhuepf.clij2.plugins.Median3DBox
median3DSliceBySliceBox(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local median of a pixels rectangular neighborhood.
median3DSliceBySliceBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.MedianSliceBySliceBox
median3DSliceBySliceSphere(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local median of a pixels ellipsoidal neighborhood.
median3DSliceBySliceSphere(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.MedianSliceBySliceSphere
median3DSphere(ClearCLImageInterface, ClearCLImageInterface, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local median of a pixels spherical neighborhood.
median3DSphere(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Median3DSphere
Median3DSphere - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Median3DSphere() - Constructor for class net.haesleinhuepf.clij2.plugins.Median3DSphere
medianOfTouchingNeighbors(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Takes a touch matrix and a vector of values to determine the median value among touching neighbors for every object.
medianOfTouchingNeighbors(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.MedianOfTouchingNeighbors
MedianOfTouchingNeighbors - Class in net.haesleinhuepf.clij2.plugins
MedianOfTouchingNeighbors() - Constructor for class net.haesleinhuepf.clij2.plugins.MedianOfTouchingNeighbors
MedianSliceBySliceBox - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
MedianSliceBySliceBox() - Constructor for class net.haesleinhuepf.clij2.plugins.MedianSliceBySliceBox
MedianSliceBySliceSphere - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
MedianSliceBySliceSphere() - Constructor for class net.haesleinhuepf.clij2.plugins.MedianSliceBySliceSphere
medianZProjection(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the median intensity projection of an image stack along Z.
medianZProjection(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.MedianZProjection
MedianZProjection - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf June 2019
MedianZProjection() - Constructor for class net.haesleinhuepf.clij2.plugins.MedianZProjection
MinError - net.haesleinhuepf.clij2.plugins.AutoThresholderImageJ1.Method
Minimum - net.haesleinhuepf.clij2.plugins.AutoThresholderImageJ1.Method
MINIMUM_INTENSITY - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
minimum2DBox(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local minimum of a pixels rectangular neighborhood.
minimum2DBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Minimum2DBox
Minimum2DBox - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Minimum2DBox() - Constructor for class net.haesleinhuepf.clij2.plugins.Minimum2DBox
minimum2DSphere(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local minimum of a pixels ellipsoidal neighborhood.
minimum2DSphere(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Minimum2DSphere
Minimum2DSphere - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Minimum2DSphere() - Constructor for class net.haesleinhuepf.clij2.plugins.Minimum2DSphere
minimum3DBox(ClearCLImageInterface, ClearCLImageInterface, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local minimum of a pixels cube neighborhood.
minimum3DBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Minimum3DBox
Minimum3DBox - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Minimum3DBox() - Constructor for class net.haesleinhuepf.clij2.plugins.Minimum3DBox
minimum3DSliceBySliceSphere(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local minimum of a pixels ellipsoidal 2D neighborhood in an image stack slice by slice.
minimum3DSliceBySliceSphere(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.MinimumSliceBySliceSphere
minimum3DSphere(ClearCLImageInterface, ClearCLImageInterface, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local minimum of a pixels spherical neighborhood.
minimum3DSphere(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Minimum3DSphere
Minimum3DSphere - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Minimum3DSphere() - Constructor for class net.haesleinhuepf.clij2.plugins.Minimum3DSphere
minimumBox(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local minimum of a pixels rectangular neighborhood.
minimumBox(ClearCLImageInterface, ClearCLImageInterface, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the local minimum of a pixels rectangular neighborhood.
minimumBox(ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
minimumBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Minimum2DBox
minimumBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Minimum3DBox
minimumBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel) - Static method in class net.haesleinhuepf.clij2.plugins.MinimumOctagon: Deprecated.
minimumDiamond(ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
minimumDiamond(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel) - Static method in class net.haesleinhuepf.clij2.plugins.MinimumOctagon: Deprecated.
minimumDistanceOfTouchingNeighbors(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Takes a touch matrix and a distance matrix to determine the shortest distance of touching neighbors for every object.
minimumDistanceOfTouchingNeighbors(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.MinimumDistanceOfTouchingNeighbors
MinimumDistanceOfTouchingNeighbors - Class in net.haesleinhuepf.clij2.plugins
MinimumDistanceOfTouchingNeighbors() - Constructor for class net.haesleinhuepf.clij2.plugins.MinimumDistanceOfTouchingNeighbors
minimumImageAndScalar(ClearCLImageInterface, ClearCLImageInterface, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the minimum of a constant scalar s and each pixel value x in a given image X.
minimumImageAndScalar(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float) - Static method in class net.haesleinhuepf.clij2.plugins.MinimumImageAndScalar
MinimumImageAndScalar - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
MinimumImageAndScalar() - Constructor for class net.haesleinhuepf.clij2.plugins.MinimumImageAndScalar
minimumImages(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes the minimum of a pair of pixel values x, y from two given images X and Y.
minimumImages(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.MinimumImages
MinimumImages - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
MinimumImages() - Constructor for class net.haesleinhuepf.clij2.plugins.MinimumImages
minimumOctagon(ClearCLBuffer, ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Applies a minimum filter with kernel size 3x3 n times to an image iteratively.
minimumOctagon(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.MinimumOctagon
MinimumOctagon - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2019
MinimumOctagon() - Constructor for class net.haesleinhuepf.clij2.plugins.MinimumOctagon
minimumOfAllPixels(ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the minimum of all pixels in a given image.
minimumOfAllPixels(CLIJ2, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.MinimumOfAllPixels
MinimumOfAllPixels - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
MinimumOfAllPixels() - Constructor for class net.haesleinhuepf.clij2.plugins.MinimumOfAllPixels
minimumOfMaskedPixels(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the minimum intensity in a masked image.
minimumOfMaskedPixels(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.MinimumOfMaskedPixels
MinimumOfMaskedPixels - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
MinimumOfMaskedPixels() - Constructor for class net.haesleinhuepf.clij2.plugins.MinimumOfMaskedPixels
minimumOfTouchingNeighbors(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Takes a touch matrix and a vector of values to determine the minimum value among touching neighbors for every object.
minimumOfTouchingNeighbors(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.MinimumOfTouchingNeighbors
MinimumOfTouchingNeighbors - Class in net.haesleinhuepf.clij2.plugins
MinimumOfTouchingNeighbors() - Constructor for class net.haesleinhuepf.clij2.plugins.MinimumOfTouchingNeighbors
MinimumSliceBySliceSphere - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
MinimumSliceBySliceSphere() - Constructor for class net.haesleinhuepf.clij2.plugins.MinimumSliceBySliceSphere
minimumXProjection(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the minimum intensity projection of an image along Y.
minimumXProjection(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.MinimumXProjection
MinimumXProjection - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf June 2020
MinimumXProjection() - Constructor for class net.haesleinhuepf.clij2.plugins.MinimumXProjection
minimumYProjection(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the minimum intensity projection of an image along Y.
minimumYProjection(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.MinimumYProjection
MinimumYProjection - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf June 2020
MinimumYProjection() - Constructor for class net.haesleinhuepf.clij2.plugins.MinimumYProjection
minimumZProjection(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the minimum intensity projection of an image along Z.
minimumZProjection(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.MinimumZProjection
MinimumZProjection - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
MinimumZProjection() - Constructor for class net.haesleinhuepf.clij2.plugins.MinimumZProjection
minimumZProjectionBounded(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the minimum intensity projection of an image along Z within a given z range.
minimumZProjectionBounded(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.MinimumZProjectionBounded
MinimumZProjectionBounded - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2019
MinimumZProjectionBounded() - Constructor for class net.haesleinhuepf.clij2.plugins.MinimumZProjectionBounded
minimumZProjectionThresholdedBounded(ClearCLBuffer, ClearCLBuffer, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the minimum intensity projection of all pixels in an image above a given threshold along Z within a given z range.
minimumZProjectionThresholdedBounded(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.MinimumZProjectionThresholdedBounded
MinimumZProjectionThresholdedBounded - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2019
MinimumZProjectionThresholdedBounded() - Constructor for class net.haesleinhuepf.clij2.plugins.MinimumZProjectionThresholdedBounded
Moments - net.haesleinhuepf.clij2.plugins.AutoThresholderImageJ1.Method
multiplyImageAndCoordinate(ClearCLImageInterface, ClearCLImageInterface, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Multiplies all pixel intensities with the x, y or z coordinate, depending on specified dimension.
multiplyImageAndCoordinate(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.MultiplyImageAndCoordinate
MultiplyImageAndCoordinate - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
MultiplyImageAndCoordinate() - Constructor for class net.haesleinhuepf.clij2.plugins.MultiplyImageAndCoordinate
multiplyImageAndScalar(ClearCLImageInterface, ClearCLImageInterface, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Multiplies all pixels value x in a given image X with a constant scalar s.
multiplyImageAndScalar(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float) - Static method in class net.haesleinhuepf.clij2.plugins.MultiplyImageAndScalar
MultiplyImageAndScalar - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
MultiplyImageAndScalar() - Constructor for class net.haesleinhuepf.clij2.plugins.MultiplyImageAndScalar
multiplyImages(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Multiplies all pairs of pixel values x and y from two images X and Y.
multiplyImages(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.MultiplyImages
MultiplyImages - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
MultiplyImages() - Constructor for class net.haesleinhuepf.clij2.plugins.MultiplyImages
multiplyImageStackWithScalars(ClearCLImageInterface, ClearCLImageInterface, float[]) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Multiplies all pixels value x in a given image X with a constant scalar s from a list of scalars.
multiplyImageStackWithScalars(ClearCLImageInterface, ClearCLImageInterface, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Multiplies all pixels value x in a given image X with a constant scalar s from a list of scalars.
multiplyImageStackWithScalars(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, float[]) - Static method in class net.haesleinhuepf.clij2.plugins.MultiplyImageStackWithScalars
multiplyImageStackWithScalars(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.MultiplyImageStackWithScalars
MultiplyImageStackWithScalars - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
MultiplyImageStackWithScalars() - Constructor for class net.haesleinhuepf.clij2.plugins.MultiplyImageStackWithScalars
multiplyMatrix(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Multiplies two matrices with each other.
multiplyMatrix(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.MultiplyMatrix
MultiplyMatrix - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf August 2019
MultiplyMatrix() - Constructor for class net.haesleinhuepf.clij2.plugins.MultiplyMatrix
multiplySliceBySliceWithScalars(ClearCLImageInterface, ClearCLImageInterface, float[]) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
multiplySliceBySliceWithScalars(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, float[]) - Static method in class net.haesleinhuepf.clij2.plugins.MultiplyImageStackWithScalars: Deprecated.
multiplyStackWithPlane(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Multiplies all pairs of pixel values x and y from an image stack X and a 2D image Y.
multiplyStackWithPlane(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.MultiplyStackWithPlane
MultiplyStackWithPlane - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
MultiplyStackWithPlane() - Constructor for class net.haesleinhuepf.clij2.plugins.MultiplyStackWithPlane

N

nativeToChannelType(NativeTypeEnum) - Static method in class net.haesleinhuepf.clij2.utilities.CLIJUtilities
nClosestDistances(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determine the n point indices with shortest distance for all points in a distance matrix.
nClosestDistances(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.NClosestDistances
NClosestDistances - Class in net.haesleinhuepf.clij2.plugins
NClosestDistances() - Constructor for class net.haesleinhuepf.clij2.plugins.NClosestDistances
nClosestPoints(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determine the n point indices with shortest distance for all points in a distance matrix.
nClosestPoints(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.NClosestPoints
NClosestPoints - Class in net.haesleinhuepf.clij2.plugins
NClosestPoints() - Constructor for class net.haesleinhuepf.clij2.plugins.NClosestPoints
neighborsOfNeighbors(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines neighbors of neigbors from touch matrix and saves the result as a new touch matrix.
neighborsOfNeighbors(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.NeighborsOfNeighbors
NeighborsOfNeighbors - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf May 2020
NeighborsOfNeighbors() - Constructor for class net.haesleinhuepf.clij2.plugins.NeighborsOfNeighbors
net.haesleinhuepf.clij2 - package net.haesleinhuepf.clij2
net.haesleinhuepf.clij2.converters.helptypes - package net.haesleinhuepf.clij2.converters.helptypes
net.haesleinhuepf.clij2.converters.implementations - package net.haesleinhuepf.clij2.converters.implementations
net.haesleinhuepf.clij2.legacy - package net.haesleinhuepf.clij2.legacy
net.haesleinhuepf.clij2.plugins - package net.haesleinhuepf.clij2.plugins
net.haesleinhuepf.clij2.utilities - package net.haesleinhuepf.clij2.utilities
nonzeroMaximumBox(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Apply a maximum filter (box shape) to the input image.
nonzeroMaximumBox(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Apply a maximum filter (box shape) to the input image.
nonzeroMaximumBox(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Apply a maximum filter (box shape) to the input image.
nonzeroMaximumBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.NonzeroMaximumBox
nonzeroMaximumBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.NonzeroMaximumBox
nonzeroMaximumBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel) - Static method in class net.haesleinhuepf.clij2.plugins.NonzeroMaximumBox
NonzeroMaximumBox - Class in net.haesleinhuepf.clij2.plugins
NonzeroMaximumBox() - Constructor for class net.haesleinhuepf.clij2.plugins.NonzeroMaximumBox
nonzeroMaximumDiamond(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Apply a maximum filter (diamond shape) to the input image.
nonzeroMaximumDiamond(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Apply a maximum filter (diamond shape) to the input image.
nonzeroMaximumDiamond(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Apply a maximum filter (diamond shape) to the input image.
nonzeroMaximumDiamond(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.NonzeroMaximumDiamond
nonzeroMaximumDiamond(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.NonzeroMaximumDiamond
nonzeroMaximumDiamond(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel) - Static method in class net.haesleinhuepf.clij2.plugins.NonzeroMaximumDiamond
NonzeroMaximumDiamond - Class in net.haesleinhuepf.clij2.plugins
NonzeroMaximumDiamond() - Constructor for class net.haesleinhuepf.clij2.plugins.NonzeroMaximumDiamond
nonzeroMinimumBox(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Apply a minimum filter (box shape) to the input image.
nonzeroMinimumBox(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Apply a minimum filter (box shape) to the input image.
nonzeroMinimumBox(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Apply a minimum filter (box shape) to the input image.
nonzeroMinimumBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.NonzeroMinimumBox
nonzeroMinimumBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.NonzeroMinimumBox
nonzeroMinimumBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel) - Static method in class net.haesleinhuepf.clij2.plugins.NonzeroMinimumBox
NonzeroMinimumBox - Class in net.haesleinhuepf.clij2.plugins
NonzeroMinimumBox() - Constructor for class net.haesleinhuepf.clij2.plugins.NonzeroMinimumBox
nonzeroMinimumDiamond(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Apply a minimum filter (diamond shape) to the input image.
nonzeroMinimumDiamond(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Apply a minimum filter (diamond shape) to the input image.
nonzeroMinimumDiamond(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Apply a minimum filter (diamond shape) to the input image.
nonzeroMinimumDiamond(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.NonzeroMinimumDiamond
nonzeroMinimumDiamond(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.NonzeroMinimumDiamond
nonzeroMinimumDiamond(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel) - Static method in class net.haesleinhuepf.clij2.plugins.NonzeroMinimumDiamond
NonzeroMinimumDiamond - Class in net.haesleinhuepf.clij2.plugins
NonzeroMinimumDiamond() - Constructor for class net.haesleinhuepf.clij2.plugins.NonzeroMinimumDiamond
notEqual(ClearCLImageInterface, ClearCLImageInterface, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines if two images A and B equal pixel wise.
notEqual(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.NotEqual
NotEqual - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf August 2019
NotEqual() - Constructor for class net.haesleinhuepf.clij2.plugins.NotEqual
notEqualConstant(ClearCLBuffer, ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines if two images A and B equal pixel wise.
notEqualConstant(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float) - Static method in class net.haesleinhuepf.clij2.plugins.NotEqualConstant
NotEqualConstant - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf August 2019
NotEqualConstant() - Constructor for class net.haesleinhuepf.clij2.plugins.NotEqualConstant

O

onlyzeroOverwriteMaximumBox(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Apply a local maximum filter to an image which only overwrites pixels with value 0.
onlyzeroOverwriteMaximumBox(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Apply a local maximum filter to an image which only overwrites pixels with value 0.
onlyzeroOverwriteMaximumBox(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Apply a local maximum filter to an image which only overwrites pixels with value 0.
onlyzeroOverwriteMaximumBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.OnlyzeroOverwriteMaximumBox
onlyzeroOverwriteMaximumBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.OnlyzeroOverwriteMaximumBox
onlyzeroOverwriteMaximumBox(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel) - Static method in class net.haesleinhuepf.clij2.plugins.OnlyzeroOverwriteMaximumBox
OnlyzeroOverwriteMaximumBox - Class in net.haesleinhuepf.clij2.plugins
OnlyzeroOverwriteMaximumBox() - Constructor for class net.haesleinhuepf.clij2.plugins.OnlyzeroOverwriteMaximumBox
onlyzeroOverwriteMaximumDiamond(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Apply a local maximum filter to an image which only overwrites pixels with value 0.
onlyzeroOverwriteMaximumDiamond(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Apply a local maximum filter to an image which only overwrites pixels with value 0.
onlyzeroOverwriteMaximumDiamond(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Apply a local maximum filter to an image which only overwrites pixels with value 0.
onlyzeroOverwriteMaximumDiamond(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.OnlyzeroOverwriteMaximumDiamond
onlyzeroOverwriteMaximumDiamond(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.OnlyzeroOverwriteMaximumDiamond
onlyzeroOverwriteMaximumDiamond(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface, ClearCLKernel) - Static method in class net.haesleinhuepf.clij2.plugins.OnlyzeroOverwriteMaximumDiamond
OnlyzeroOverwriteMaximumDiamond - Class in net.haesleinhuepf.clij2.plugins
OnlyzeroOverwriteMaximumDiamond() - Constructor for class net.haesleinhuepf.clij2.plugins.OnlyzeroOverwriteMaximumDiamond
openingBox(ClearCLBuffer, ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Apply a binary opening to the input image by calling n erosions and n dilations subsequenntly.
openingBox(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.OpeningBox
OpeningBox - Class in net.haesleinhuepf.clij2.plugins
OpeningBox() - Constructor for class net.haesleinhuepf.clij2.plugins.OpeningBox
openingDiamond(ClearCLBuffer, ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Apply a binary opening to the input image by calling n erosions and n dilations subsequenntly.
openingDiamond(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.OpeningDiamond
OpeningDiamond - Class in net.haesleinhuepf.clij2.plugins
OpeningDiamond() - Constructor for class net.haesleinhuepf.clij2.plugins.OpeningDiamond
Otsu - net.haesleinhuepf.clij2.plugins.AutoThresholderImageJ1.Method

P

paste(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Pastes an image into another image at a given position.
paste(ClearCLImageInterface, ClearCLImageInterface, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Pastes an image into another image at a given position.
paste(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Paste2D
paste(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Paste3D
paste2D(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Pastes an image into another image at a given position.
paste2D(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Paste2D
Paste2D - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
Paste2D() - Constructor for class net.haesleinhuepf.clij2.plugins.Paste2D
paste3D(ClearCLImageInterface, ClearCLImageInterface, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Pastes an image into another image at a given position.
paste3D(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.Paste3D
Paste3D - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
Paste3D() - Constructor for class net.haesleinhuepf.clij2.plugins.Paste3D
Percentile - net.haesleinhuepf.clij2.plugins.AutoThresholderImageJ1.Method
PIXEL_COUNT - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
pointIndexListToMesh(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Meshes all points in a given point list which are indiced in a corresponding index list.
pointIndexListToMesh(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.PointIndexListToMesh
PointIndexListToMesh - Class in net.haesleinhuepf.clij2.plugins: PointIndexListToMesh
PointIndexListToMesh() - Constructor for class net.haesleinhuepf.clij2.plugins.PointIndexListToMesh
pointlistToLabelledSpots(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Takes a pointlist with dimensions n times d with n point coordinates in d dimensions and labels corresponding pixels.
pointlistToLabelledSpots(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.PointlistToLabelledSpots
PointlistToLabelledSpots - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
PointlistToLabelledSpots() - Constructor for class net.haesleinhuepf.clij2.plugins.PointlistToLabelledSpots
power(ClearCLImageInterface, ClearCLImageInterface, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes all pixels value x to the power of a given exponent a.
power(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float) - Static method in class net.haesleinhuepf.clij2.plugins.Power
Power - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
Power() - Constructor for class net.haesleinhuepf.clij2.plugins.Power
powerImages(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Calculates x to the power of y pixel wise of two images X and Y.
powerImages(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.PowerImages
PowerImages - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf August 2019
PowerImages() - Constructor for class net.haesleinhuepf.clij2.plugins.PowerImages
print(ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Visualises an image on standard out (console).
print(CLIJ2, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.Print
Print - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf March 2020 in Bordeaux
Print() - Constructor for class net.haesleinhuepf.clij2.plugins.Print
ProcessableInTiles - Interface in net.haesleinhuepf.clij2.utilities
pull(Object) - Method in class net.haesleinhuepf.clij2.CLIJ2
Pull - Class in net.haesleinhuepf.clij2.plugins: Release
Pull() - Constructor for class net.haesleinhuepf.clij2.plugins.Pull
pullAsROI(ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Pulls a binary image from the GPU memory and puts it on the currently active ImageJ window as region of interest.
pullAsROI(CLIJ2, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.PullAsROI
PullAsROI - Class in net.haesleinhuepf.clij2.plugins
PullAsROI() - Constructor for class net.haesleinhuepf.clij2.plugins.PullAsROI
pullBinary(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.CLIJ2
PullBinary - Class in net.haesleinhuepf.clij2.plugins: PullBinary
PullBinary() - Constructor for class net.haesleinhuepf.clij2.plugins.PullBinary
pullBinaryRAI(Object) - Method in class net.haesleinhuepf.clij2.CLIJ2
pullLabelsToROIList(ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Pulls all labels in a label map as ROIs to a list.
pullLabelsToROIList(ClearCLBuffer, List) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Pulls all labels in a label map as ROIs to a list.
pullLabelsToROIList(CLIJ2, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.PullLabelsToROIList
pullLabelsToROIList(CLIJ2, ClearCLBuffer, List<Roi>) - Static method in class net.haesleinhuepf.clij2.plugins.PullLabelsToROIList
PullLabelsToROIList - Class in net.haesleinhuepf.clij2.plugins
PullLabelsToROIList() - Constructor for class net.haesleinhuepf.clij2.plugins.PullLabelsToROIList
pullLabelsToROIManager(ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Pulls all labels in a label map as ROIs to the ROI manager.
pullLabelsToROIManager(ClearCLBuffer, RoiManager) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Pulls all labels in a label map as ROIs to the ROI manager.
pullLabelsToROIManager(CLIJ2, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.PullLabelsToROIManager
pullLabelsToROIManager(CLIJ2, ClearCLBuffer, RoiManager) - Static method in class net.haesleinhuepf.clij2.plugins.PullLabelsToROIManager
PullLabelsToROIManager - Class in net.haesleinhuepf.clij2.plugins
PullLabelsToROIManager() - Constructor for class net.haesleinhuepf.clij2.plugins.PullLabelsToROIManager
pullMat(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.CLIJ2
pullMatXYZ(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.CLIJ2
pullRAI(Object) - Method in class net.haesleinhuepf.clij2.CLIJ2
pullString(ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Writes an image into a string.
pullString(CLIJ2, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.PullString
PullString - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
PullString() - Constructor for class net.haesleinhuepf.clij2.plugins.PullString
pullToCurrentSlice(CLIJ2, ClearCLBuffer, ImagePlus) - Static method in class net.haesleinhuepf.clij2.plugins.PullToCurrentSlice
PullToCurrentSlice - Class in net.haesleinhuepf.clij2.plugins
PullToCurrentSlice() - Constructor for class net.haesleinhuepf.clij2.plugins.PullToCurrentSlice
pullToCurrentSliceSelection(CLIJ2, ClearCLBuffer, ImagePlus) - Static method in class net.haesleinhuepf.clij2.plugins.PullToCurrentSliceSelection
PullToCurrentSliceSelection - Class in net.haesleinhuepf.clij2.plugins
PullToCurrentSliceSelection() - Constructor for class net.haesleinhuepf.clij2.plugins.PullToCurrentSliceSelection
pullToRAI(Object, RandomAccessibleInterval) - Method in class net.haesleinhuepf.clij2.CLIJ2
pullToResultsTable(ClearCLBuffer, ResultsTable) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Converts an image into a table.
pullToResultsTable(ClearCLImage, ResultsTable) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Converts an image into a table.
pullToResultsTable(CLIJ2, ClearCLBuffer, ResultsTable) - Static method in class net.haesleinhuepf.clij2.plugins.PullToResultsTable
pullToResultsTable(CLIJ2, ClearCLImage, ResultsTable) - Static method in class net.haesleinhuepf.clij2.plugins.PullToResultsTable
PullToResultsTable - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
PullToResultsTable() - Constructor for class net.haesleinhuepf.clij2.plugins.PullToResultsTable
PullToROIManager - Class in net.haesleinhuepf.clij2.plugins
PullToROIManager() - Constructor for class net.haesleinhuepf.clij2.plugins.PullToROIManager
push(Object) - Method in class net.haesleinhuepf.clij2.CLIJ2
Push - Class in net.haesleinhuepf.clij2.plugins: Release
Push() - Constructor for class net.haesleinhuepf.clij2.plugins.Push
pushArray(float[], double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Converts an array to an image.
pushArray(ClearCLBuffer, Object) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Converts an array to an image.
pushArray(CLIJ2, float[], Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.PushArray
pushArray(CLIJ2, ClearCLBuffer, Object) - Static method in class net.haesleinhuepf.clij2.plugins.PushArray
PushArray - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf September 2019
PushArray() - Constructor for class net.haesleinhuepf.clij2.plugins.PushArray
pushCurrentSelection(ImagePlus) - Method in class net.haesleinhuepf.clij2.CLIJ2
PushCurrentSelection - Class in net.haesleinhuepf.clij2.plugins: Release
PushCurrentSelection() - Constructor for class net.haesleinhuepf.clij2.plugins.PushCurrentSelection
pushCurrentSlice(ImagePlus) - Method in class net.haesleinhuepf.clij2.CLIJ2
PushCurrentSlice - Class in net.haesleinhuepf.clij2.plugins: Release
PushCurrentSlice() - Constructor for class net.haesleinhuepf.clij2.plugins.PushCurrentSlice
PushCurrentSliceSelection - Class in net.haesleinhuepf.clij2.plugins: Release
PushCurrentSliceSelection() - Constructor for class net.haesleinhuepf.clij2.plugins.PushCurrentSliceSelection
pushCurrentZStack(ImagePlus) - Method in class net.haesleinhuepf.clij2.CLIJ2
PushCurrentZStack - Class in net.haesleinhuepf.clij2.plugins: Release
PushCurrentZStack() - Constructor for class net.haesleinhuepf.clij2.plugins.PushCurrentZStack
pushMat(Object) - Method in class net.haesleinhuepf.clij2.CLIJ2
pushMatXYZ(Object) - Method in class net.haesleinhuepf.clij2.CLIJ2
pushResultsTable(ClearCLBuffer, ResultsTable) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Converts a table to an image.
pushResultsTable(CLIJ2, ClearCLBuffer, ResultsTable) - Static method in class net.haesleinhuepf.clij2.plugins.PushResultsTable
PushResultsTable - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
PushResultsTable() - Constructor for class net.haesleinhuepf.clij2.plugins.PushResultsTable
pushResultsTableColumn(ClearCLBuffer, ResultsTable, String) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Converts a table column to an image.
pushResultsTableColumn(CLIJ2, ClearCLBuffer, ResultsTable, String) - Static method in class net.haesleinhuepf.clij2.plugins.PushResultsTableColumn
PushResultsTableColumn - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
PushResultsTableColumn() - Constructor for class net.haesleinhuepf.clij2.plugins.PushResultsTableColumn
pushString(String) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Converts an string to an image.
pushString(ClearCLBuffer, String) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Converts an string to an image.
pushString(CLIJ2, String) - Static method in class net.haesleinhuepf.clij2.plugins.PushString
pushString(CLIJ2, ClearCLBuffer, String) - Static method in class net.haesleinhuepf.clij2.plugins.PushString
PushString - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
PushString() - Constructor for class net.haesleinhuepf.clij2.plugins.PushString

R

radialProjection(ClearCLBuffer, ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
radialProjection(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float) - Static method in class net.haesleinhuepf.clij2.plugins.ResliceRadial: Deprecated.
recordMethodEnd(String) - Method in class net.haesleinhuepf.clij2.CLIJ2
recordMethodEnd(String) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops
recordMethodStart(String) - Method in class net.haesleinhuepf.clij2.CLIJ2
recordMethodStart(String) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops
reduceStack(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Reduces the number of slices in a stack by a given factor.
reduceStack(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.ReduceStack
ReduceStack - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf May 2020
ReduceStack() - Constructor for class net.haesleinhuepf.clij2.plugins.ReduceStack
registerPlugin(String, Class) - Method in class net.haesleinhuepf.clij2.legacy.FallBackCLIJMacroPluginService
release(ClearCLImageInterface) - Method in class net.haesleinhuepf.clij2.CLIJ2
Release - Class in net.haesleinhuepf.clij2.plugins: Release
Release() - Constructor for class net.haesleinhuepf.clij2.plugins.Release
RenyiEntropy - net.haesleinhuepf.clij2.plugins.AutoThresholderImageJ1.Method
replaceIntensities(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Replaces integer intensities specified in a vector image.
replaceIntensities(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.ReplaceIntensities
ReplaceIntensities - Class in net.haesleinhuepf.clij2.plugins
ReplaceIntensities() - Constructor for class net.haesleinhuepf.clij2.plugins.ReplaceIntensities
replaceIntensity(ClearCLImageInterface, ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Replaces a specific intensity in an image with a given new value.
replaceIntensity(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.ReplaceIntensity
ReplaceIntensity - Class in net.haesleinhuepf.clij2.plugins
ReplaceIntensity() - Constructor for class net.haesleinhuepf.clij2.plugins.ReplaceIntensity
replacePixelsIfZero(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Replaces pixel values x with y in case x is zero.
replacePixelsIfZero(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.ReplacePixelsIfZero
ReplacePixelsIfZero - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf June 2020
ReplacePixelsIfZero() - Constructor for class net.haesleinhuepf.clij2.plugins.ReplacePixelsIfZero
reportMemory() - Method in class net.haesleinhuepf.clij2.CLIJ2
ReportMemory - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
ReportMemory() - Constructor for class net.haesleinhuepf.clij2.plugins.ReportMemory
resample(ClearCLImageInterface, ClearCLImageInterface, double, double, double, boolean) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
resample(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float, Float, Boolean) - Static method in class net.haesleinhuepf.clij2.plugins.Resample: Deprecated.
Resample - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Resample() - Constructor for class net.haesleinhuepf.clij2.plugins.Resample
resample2D(ClearCLImageInterface, ClearCLImageInterface, double, double, boolean) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops
resample2D(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float, Boolean) - Static method in class net.haesleinhuepf.clij2.plugins.Resample
resample3D(ClearCLImageInterface, ClearCLImageInterface, double, double, double, boolean) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops
resample3D(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float, Float, Float, Boolean) - Static method in class net.haesleinhuepf.clij2.plugins.Resample
resetTimeTraces() - Method in class net.haesleinhuepf.clij2.CLIJ2
resliceBottom(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Flippes Y and Z axis of an image stack.
resliceBottom(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.ResliceBottom
ResliceBottom - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
ResliceBottom() - Constructor for class net.haesleinhuepf.clij2.plugins.ResliceBottom
resliceLeft(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Flippes X, Y and Z axis of an image stack.
resliceLeft(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.ResliceLeft
ResliceLeft - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
ResliceLeft() - Constructor for class net.haesleinhuepf.clij2.plugins.ResliceLeft
resliceRadial(ClearCLBuffer, ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes a radial projection of an image stack.
resliceRadial(ClearCLBuffer, ClearCLBuffer, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes a radial projection of an image stack.
resliceRadial(ClearCLBuffer, ClearCLBuffer, double, double, double, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes a radial projection of an image stack.
resliceRadial(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float) - Static method in class net.haesleinhuepf.clij2.plugins.ResliceRadial
resliceRadial(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.ResliceRadial
resliceRadial(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float, Float, Float, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.ResliceRadial
ResliceRadial - Class in net.haesleinhuepf.clij2.plugins: ResliceRadial
ResliceRadial() - Constructor for class net.haesleinhuepf.clij2.plugins.ResliceRadial
ResliceRadialTop - Class in net.haesleinhuepf.clij2.plugins: ResliceRadial
ResliceRadialTop() - Constructor for class net.haesleinhuepf.clij2.plugins.ResliceRadialTop
resliceRight(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Flippes X, Y and Z axis of an image stack.
resliceRight(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.ResliceRight
ResliceRight - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
ResliceRight() - Constructor for class net.haesleinhuepf.clij2.plugins.ResliceRight
resliceTop(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Flippes Y and Z axis of an image stack.
resliceTop(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.ResliceTop
ResliceTop - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
ResliceTop() - Constructor for class net.haesleinhuepf.clij2.plugins.ResliceTop
resultsTableColumnToImage(ClearCLBuffer, ResultsTable, String) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Converts a table column to an image.
resultsTableColumnToImage(CLIJ2, ClearCLBuffer, ResultsTable, String) - Static method in class net.haesleinhuepf.clij2.plugins.ResultsTableColumnToImage
ResultsTableColumnToImage - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
ResultsTableColumnToImage() - Constructor for class net.haesleinhuepf.clij2.plugins.ResultsTableColumnToImage
resultsTableToImage2D(ClearCLBuffer, ResultsTable) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
resultsTableToImage2D(CLIJ2, ClearCLBuffer, ResultsTable) - Static method in class net.haesleinhuepf.clij2.plugins.ResultsTableToImage2D: Deprecated.
ResultsTableToImage2D - Class in net.haesleinhuepf.clij2.plugins: Deprecated.
ResultsTableToImage2D() - Constructor for class net.haesleinhuepf.clij2.plugins.ResultsTableToImage2D: Deprecated.
rotate2D(ClearCLBuffer, ClearCLBuffer, double, boolean) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Rotates an image in plane.
rotate2D(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float, Boolean) - Static method in class net.haesleinhuepf.clij2.plugins.Rotate2D
Rotate2D - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Rotate2D() - Constructor for class net.haesleinhuepf.clij2.plugins.Rotate2D
rotate3D(ClearCLBuffer, ClearCLBuffer, double, double, double, boolean) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Rotates an image stack in 3D.
rotate3D(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float, Float, Float, Boolean) - Static method in class net.haesleinhuepf.clij2.plugins.Rotate3D
Rotate3D - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Rotate3D() - Constructor for class net.haesleinhuepf.clij2.plugins.Rotate3D
rotateClockwise(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Rotates a given input image by 90 degrees clockwise.
rotateClockwise(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.RotateClockwise
RotateClockwise - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
RotateClockwise() - Constructor for class net.haesleinhuepf.clij2.plugins.RotateClockwise
rotateCounterClockwise(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Rotates a given input image by 90 degrees counter-clockwise.
rotateCounterClockwise(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.RotateCounterClockwise
RotateCounterClockwise - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
RotateCounterClockwise() - Constructor for class net.haesleinhuepf.clij2.plugins.RotateCounterClockwise
rotateLeft(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
rotateLeft(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.RotateCounterClockwise: Deprecated.
RotateLeft - Class in net.haesleinhuepf.clij2.plugins: Deprecated.
RotateLeft() - Constructor for class net.haesleinhuepf.clij2.plugins.RotateLeft: Deprecated.
rotateRight(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
rotateRight(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.RotateClockwise: Deprecated.
RotateRight - Class in net.haesleinhuepf.clij2.plugins: Deprecated.
RotateRight() - Constructor for class net.haesleinhuepf.clij2.plugins.RotateRight: Deprecated.
run() - Method in class net.haesleinhuepf.clij2.utilities.CLIJ2MacroExtensions
run(String) - Method in class net.haesleinhuepf.clij2.legacy.CLIJLegacyMacroExtensions

S

saveAsTIF(ClearCLBuffer, String) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Pulls an image from the GPU memory and saves it as TIF to disc.
saveAsTIF(CLIJ2, ClearCLBuffer, String) - Static method in class net.haesleinhuepf.clij2.plugins.SaveAsTIF
SaveAsTIF - Class in net.haesleinhuepf.clij2.plugins
SaveAsTIF() - Constructor for class net.haesleinhuepf.clij2.plugins.SaveAsTIF
scale(ClearCLBuffer, ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Scales an image with a given factor.
scale(ClearCLBuffer, ClearCLBuffer, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Scales an image with a given factor.
scale(ClearCLBuffer, ClearCLBuffer, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
scale(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float) - Static method in class net.haesleinhuepf.clij2.plugins.Scale2D
scale(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.Scale2D
scale(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.Scale: Deprecated.
Scale - Class in net.haesleinhuepf.clij2.plugins: Deprecated.
Scale() - Constructor for class net.haesleinhuepf.clij2.plugins.Scale: Deprecated.
scale2D(ClearCLBuffer, ClearCLBuffer, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Scales an image with a given factor.
scale2D(ClearCLBuffer, ClearCLBuffer, double, double, boolean) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Scales an image with a given factor.
scale2D(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.Scale2D
scale2D(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float, Float, boolean) - Static method in class net.haesleinhuepf.clij2.plugins.Scale2D
Scale2D - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Scale2D() - Constructor for class net.haesleinhuepf.clij2.plugins.Scale2D
scale3D(ClearCLBuffer, ClearCLBuffer, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Scales an image with a given factor.
scale3D(ClearCLBuffer, ClearCLBuffer, double, double, double, boolean) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Scales an image with a given factor.
scale3D(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.Scale3D
scale3D(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float, Float, Float, Boolean) - Static method in class net.haesleinhuepf.clij2.plugins.Scale3D
Scale3D - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Scale3D() - Constructor for class net.haesleinhuepf.clij2.plugins.Scale3D
set(ClearCLImageInterface, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Sets all pixel values x of a given image X to a constant value v.
set(CLIJ2, ClearCLImageInterface, Float) - Static method in class net.haesleinhuepf.clij2.plugins.Set
Set - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
Set() - Constructor for class net.haesleinhuepf.clij2.plugins.Set
setClij(CLIJ) - Method in class net.haesleinhuepf.clij2.AbstractCLIJ2Plugin
setCLIJ2(CLIJ2) - Method in class net.haesleinhuepf.clij2.AbstractCLIJ2Plugin
setColumn(ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Sets all pixel values x of a given column in X to a constant value v.
setColumn(CLIJ2, ClearCLImageInterface, Integer, Float) - Static method in class net.haesleinhuepf.clij2.plugins.SetColumn
SetColumn - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
SetColumn() - Constructor for class net.haesleinhuepf.clij2.plugins.SetColumn
setDoTimeTracing(boolean) - Method in class net.haesleinhuepf.clij2.CLIJ2
setImageBorders(ClearCLImageInterface, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Sets all pixel values at the image border to a given value.
setImageBorders(CLIJ2, ClearCLImageInterface, Float) - Static method in class net.haesleinhuepf.clij2.plugins.SetImageBorders
SetImageBorders - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf March 2020
SetImageBorders() - Constructor for class net.haesleinhuepf.clij2.plugins.SetImageBorders
setKeepReferences(boolean) - Method in class net.haesleinhuepf.clij2.CLIJ2: Deprecated.
setNonZeroPixelsToPixelIndex(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Sets all pixels in an image which are not zero to the index of the pixel.
setNonZeroPixelsToPixelIndex(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.SetNonZeroPixelsToPixelIndex
SetNonZeroPixelsToPixelIndex - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
SetNonZeroPixelsToPixelIndex() - Constructor for class net.haesleinhuepf.clij2.plugins.SetNonZeroPixelsToPixelIndex
setPlane(ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Sets all pixel values x of a given plane in X to a constant value v.
setPlane(CLIJ2, ClearCLImageInterface, Integer, Float) - Static method in class net.haesleinhuepf.clij2.plugins.SetPlane
SetPlane - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
SetPlane() - Constructor for class net.haesleinhuepf.clij2.plugins.SetPlane
setRampX(ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Sets all pixel values to their X coordinate
setRampX(CLIJ2, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.SetRampX
SetRampX - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf February 2020
SetRampX() - Constructor for class net.haesleinhuepf.clij2.plugins.SetRampX
setRampY(ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Sets all pixel values to their Y coordinate
setRampY(CLIJ2, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.SetRampY
SetRampY - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf February 2020
SetRampY() - Constructor for class net.haesleinhuepf.clij2.plugins.SetRampY
setRampZ(ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Sets all pixel values to their Z coordinate
setRampZ(CLIJ2, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.SetRampZ
SetRampZ - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf February 2020
SetRampZ() - Constructor for class net.haesleinhuepf.clij2.plugins.SetRampZ
setRandom(ClearCLBuffer, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Fills an image or image stack with uniformly distributed random numbers between given minimum and maximum values.
setRandom(ClearCLBuffer, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Fills an image or image stack with uniformly distributed random numbers between given minimum and maximum values.
setRandom(CLIJ2, ClearCLBuffer, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.SetRandom
setRandom(CLIJ2, ClearCLBuffer, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.SetRandom
SetRandom - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf March 2020
SetRandom() - Constructor for class net.haesleinhuepf.clij2.plugins.SetRandom
setRow(ClearCLImageInterface, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Sets all pixel values x of a given row in X to a constant value v.
setRow(CLIJ2, ClearCLImageInterface, Integer, Float) - Static method in class net.haesleinhuepf.clij2.plugins.SetRow
SetRow - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
SetRow() - Constructor for class net.haesleinhuepf.clij2.plugins.SetRow
setWaitForKernelFinish(boolean) - Method in class net.haesleinhuepf.clij2.CLIJ2
setWhereXequalsY(ClearCLImageInterface, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Sets all pixel values a of a given image A to a constant value v in case its coordinates x == y.
setWhereXequalsY(CLIJ2, ClearCLImageInterface, Float) - Static method in class net.haesleinhuepf.clij2.plugins.SetWhereXequalsY
SetWhereXequalsY - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
SetWhereXequalsY() - Constructor for class net.haesleinhuepf.clij2.plugins.SetWhereXequalsY
setWhereXgreaterThanY(ClearCLImageInterface, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Sets all pixel values a of a given image A to a constant value v in case its coordinates x > y.
setWhereXgreaterThanY(CLIJ2, ClearCLImageInterface, Float) - Static method in class net.haesleinhuepf.clij2.plugins.SetWhereXgreaterThanY
SetWhereXgreaterThanY - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
SetWhereXgreaterThanY() - Constructor for class net.haesleinhuepf.clij2.plugins.SetWhereXgreaterThanY
setWhereXsmallerThanY(ClearCLImageInterface, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Sets all pixel values a of a given image A to a constant value v in case its coordinates x < y.
setWhereXsmallerThanY(CLIJ2, ClearCLImageInterface, Float) - Static method in class net.haesleinhuepf.clij2.plugins.SetWhereXsmallerThanY
SetWhereXsmallerThanY - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
SetWhereXsmallerThanY() - Constructor for class net.haesleinhuepf.clij2.plugins.SetWhereXsmallerThanY
Shanbhag - net.haesleinhuepf.clij2.plugins.AutoThresholderImageJ1.Method
shiftIntensitiesToCloseGaps(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
shiftIntensitiesToCloseGaps(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.CloseIndexGapsInLabelMap: Deprecated.
shortestDistances(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determine the shortest distance from a distance matrix.
shortestDistances(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.ShortestDistances
ShortestDistances - Class in net.haesleinhuepf.clij2.plugins
ShortestDistances() - Constructor for class net.haesleinhuepf.clij2.plugins.ShortestDistances
show(Object, String) - Method in class net.haesleinhuepf.clij2.CLIJ2
smaller(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines if two images A and B smaller pixel wise.
smaller(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.Smaller
Smaller - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf August 2019
Smaller() - Constructor for class net.haesleinhuepf.clij2.plugins.Smaller
smallerConstant(ClearCLBuffer, ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines if two images A and B smaller pixel wise.
smallerConstant(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float) - Static method in class net.haesleinhuepf.clij2.plugins.SmallerConstant
SmallerConstant - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf August 2019
SmallerConstant() - Constructor for class net.haesleinhuepf.clij2.plugins.SmallerConstant
smallerOrEqual(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines if two images A and B smaller or equal pixel wise.
smallerOrEqual(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.SmallerOrEqual
SmallerOrEqual - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf August 2019
SmallerOrEqual() - Constructor for class net.haesleinhuepf.clij2.plugins.SmallerOrEqual
smallerOrEqualConstant(ClearCLBuffer, ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines if two images A and B smaller or equal pixel wise.
smallerOrEqualConstant(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float) - Static method in class net.haesleinhuepf.clij2.plugins.SmallerOrEqualConstant
SmallerOrEqualConstant - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf August 2019
SmallerOrEqualConstant() - Constructor for class net.haesleinhuepf.clij2.plugins.SmallerOrEqualConstant
sobel(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Convolve the image with the Sobel kernel.
sobel(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.Sobel
Sobel - Class in net.haesleinhuepf.clij2.plugins: Author: @ruthhwj, @haesleinhuepf November 2019
Sobel() - Constructor for class net.haesleinhuepf.clij2.plugins.Sobel
sorensenDiceCoefficient(double) - Static method in class net.haesleinhuepf.clij2.plugins.SorensenDiceCoefficient
sorensenDiceCoefficient(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the overlap of two binary images using the Sorensen-Dice coefficent.
sorensenDiceCoefficient(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.SorensenDiceCoefficient
SorensenDiceCoefficient - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf July 2019
SorensenDiceCoefficient() - Constructor for class net.haesleinhuepf.clij2.plugins.SorensenDiceCoefficient
spotsToPointList(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Transforms a spots image as resulting from maximum/minimum detection in an image where every column contains d pixels (with d = dimensionality of the original image) with the coordinates of the maxima/minima.
spotsToPointList(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.SpotsToPointList
SpotsToPointList - Class in net.haesleinhuepf.clij2.plugins
SpotsToPointList() - Constructor for class net.haesleinhuepf.clij2.plugins.SpotsToPointList
squaredDifference(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the squared difference pixel by pixel between two images.
squaredDifference(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.SquaredDifference
SquaredDifference - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf June 2020
SquaredDifference() - Constructor for class net.haesleinhuepf.clij2.plugins.SquaredDifference
STANDARD_DEVIATION_INTENSITY - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
standardDeviationOfAllPixels(ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the standard deviation of all pixels in an image.
standardDeviationOfAllPixels(ClearCLImageInterface, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the standard deviation of all pixels in an image.
standardDeviationOfAllPixels(CLIJ2, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.StandardDeviationOfAllPixels
standardDeviationOfAllPixels(CLIJ2, ClearCLImageInterface, Float) - Static method in class net.haesleinhuepf.clij2.plugins.StandardDeviationOfAllPixels
StandardDeviationOfAllPixels - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf September 2019
StandardDeviationOfAllPixels() - Constructor for class net.haesleinhuepf.clij2.plugins.StandardDeviationOfAllPixels
standardDeviationOfMaskedPixels(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the standard deviation of all pixels in an image which have non-zero value in a corresponding mask image.
standardDeviationOfMaskedPixels(ClearCLBuffer, ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the standard deviation of all pixels in an image which have non-zero value in a corresponding mask image.
standardDeviationOfMaskedPixels(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.StandardDeviationOfMaskedPixels
standardDeviationOfMaskedPixels(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float) - Static method in class net.haesleinhuepf.clij2.plugins.StandardDeviationOfMaskedPixels
StandardDeviationOfMaskedPixels - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf September 2019
StandardDeviationOfMaskedPixels() - Constructor for class net.haesleinhuepf.clij2.plugins.StandardDeviationOfMaskedPixels
standardDeviationOfTouchingNeighbors(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Takes a touch matrix and a vector of values to determine the standard deviation value among touching neighbors for every object.
standardDeviationOfTouchingNeighbors(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.StandardDeviationOfTouchingNeighbors
StandardDeviationOfTouchingNeighbors - Class in net.haesleinhuepf.clij2.plugins
StandardDeviationOfTouchingNeighbors() - Constructor for class net.haesleinhuepf.clij2.plugins.StandardDeviationOfTouchingNeighbors
standardDeviationZProjection(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the standard deviation intensity projection of an image stack along Z.
standardDeviationZProjection(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.StandardDeviationZProjection
StandardDeviationZProjection - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf June 2019
StandardDeviationZProjection() - Constructor for class net.haesleinhuepf.clij2.plugins.StandardDeviationZProjection
StartTimeTracing - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
StartTimeTracing() - Constructor for class net.haesleinhuepf.clij2.plugins.StartTimeTracing
statisticsOfBackgroundAndLabelledPixels(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines bounding box, area (in pixels/voxels), min, max and mean intensity of background and labelled objects in a label map and corresponding pixels in the original image.
statisticsOfBackgroundAndLabelledPixels(ClearCLBuffer, ClearCLBuffer, ResultsTable) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines bounding box, area (in pixels/voxels), min, max and mean intensity of background and labelled objects in a label map and corresponding pixels in the original image.
statisticsOfBackgroundAndLabelledPixels(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.StatisticsOfBackgroundAndLabelledPixels
statisticsOfBackgroundAndLabelledPixels(CLIJ2, ClearCLBuffer, ClearCLBuffer, ResultsTable) - Static method in class net.haesleinhuepf.clij2.plugins.StatisticsOfBackgroundAndLabelledPixels
StatisticsOfBackgroundAndLabelledPixels - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
StatisticsOfBackgroundAndLabelledPixels() - Constructor for class net.haesleinhuepf.clij2.plugins.StatisticsOfBackgroundAndLabelledPixels
statisticsOfImage(ClearCLBuffer, ResultsTable) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines image size (bounding box), area (in pixels/voxels), min, max and mean intensity of all pixels in the original image.
statisticsOfImage(CLIJ2, ClearCLBuffer, ResultsTable) - Static method in class net.haesleinhuepf.clij2.plugins.StatisticsOfImage
StatisticsOfImage - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
StatisticsOfImage() - Constructor for class net.haesleinhuepf.clij2.plugins.StatisticsOfImage
statisticsOfLabelledPixels(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines bounding box, area (in pixels/voxels), min, max and mean intensity of labelled objects in a label map and corresponding pixels in the original image.
statisticsOfLabelledPixels(ClearCLBuffer, ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines bounding box, area (in pixels/voxels), min, max and mean intensity of labelled objects in a label map and corresponding pixels in the original image.
statisticsOfLabelledPixels(ClearCLBuffer, ClearCLBuffer, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines bounding box, area (in pixels/voxels), min, max and mean intensity of labelled objects in a label map and corresponding pixels in the original image.
statisticsOfLabelledPixels(ClearCLBuffer, ClearCLBuffer, ResultsTable) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines bounding box, area (in pixels/voxels), min, max and mean intensity of labelled objects in a label map and corresponding pixels in the original image.
statisticsOfLabelledPixels(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels
statisticsOfLabelledPixels(CLIJ2, ClearCLBuffer, ClearCLBuffer, ResultsTable) - Static method in class net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels
statisticsOfLabelledPixels(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels
statisticsOfLabelledPixels(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels
StatisticsOfLabelledPixels - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf September 2019 in Prague
StatisticsOfLabelledPixels() - Constructor for class net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels
statisticsOfLabelledPixels_single_threaded(ClearCLBuffer, ClearCLBuffer, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops
statisticsOfLabelledPixels_single_threaded(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels
StatisticsOfLabelledPixels.STATISTICS_ENTRY - Enum in net.haesleinhuepf.clij2.plugins
StopTimeTracing - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
StopTimeTracing() - Constructor for class net.haesleinhuepf.clij2.plugins.StopTimeTracing
subtract(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
subtract(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.SubtractImages: Deprecated.
subtractImageFromScalar(ClearCLImageInterface, ClearCLImageInterface, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Subtracts one image X from a scalar s pixel wise.
subtractImageFromScalar(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float) - Static method in class net.haesleinhuepf.clij2.plugins.SubtractImageFromScalar
SubtractImageFromScalar - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
SubtractImageFromScalar() - Constructor for class net.haesleinhuepf.clij2.plugins.SubtractImageFromScalar
subtractImages(ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Subtracts one image X from another image Y pixel wise.
subtractImages(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.SubtractImages
SubtractImages - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
SubtractImages() - Constructor for class net.haesleinhuepf.clij2.plugins.SubtractImages
SUM_DISTANCE_TO_CENTROID - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
SUM_DISTANCE_TO_MASS_CENTER - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
SUM_INTENSITY - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
SUM_INTENSITY_TIMES_X - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
SUM_INTENSITY_TIMES_Y - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
SUM_INTENSITY_TIMES_Z - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
SUM_X - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
SUM_Y - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
SUM_Z - net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
sumImageSliceBySlice(ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Sums all pixels slice by slice and returns the sums in a vector.
sumImageSliceBySlice(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Sums all pixels slice by slice and returns the sums in a vector.
sumImageSliceBySlice(CLIJ2, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.SumImageSliceBySlice
sumImageSliceBySlice(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.SumImageSliceBySlice
SumImageSliceBySlice - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
SumImageSliceBySlice() - Constructor for class net.haesleinhuepf.clij2.plugins.SumImageSliceBySlice
sumOfAllPixels(ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the sum of all pixels in a given image.
sumOfAllPixels(CLIJ2, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.SumOfAllPixels
SumOfAllPixels - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
SumOfAllPixels() - Constructor for class net.haesleinhuepf.clij2.plugins.SumOfAllPixels
sumPixels(ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
sumPixels(CLIJ2, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.SumOfAllPixels: Deprecated.
sumPixelsSliceByslice(ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Deprecated.
sumPixelsSliceByslice(CLIJ2, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.SumImageSliceBySlice: Deprecated.
sumXProjection(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the sum intensity projection of an image along Z.
sumXProjection(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.SumXProjection
SumXProjection - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
SumXProjection() - Constructor for class net.haesleinhuepf.clij2.plugins.SumXProjection
sumYProjection(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the sum intensity projection of an image along Z.
sumYProjection(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.SumYProjection
SumYProjection - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
SumYProjection() - Constructor for class net.haesleinhuepf.clij2.plugins.SumYProjection
sumZProjection(ClearCLImageInterface, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the sum intensity projection of an image along Z.
sumZProjection(CLIJ2, ClearCLImageInterface, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.SumZProjection
SumZProjection - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
SumZProjection() - Constructor for class net.haesleinhuepf.clij2.plugins.SumZProjection

T

threshold(ClearCLImageInterface, ClearCLImageInterface, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Computes a binary image with pixel values 0 and 1.
threshold(CLIJ2, ClearCLImageInterface, ClearCLImageInterface, Float) - Static method in class net.haesleinhuepf.clij2.plugins.Threshold
Threshold - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
Threshold() - Constructor for class net.haesleinhuepf.clij2.plugins.Threshold
thresholdDefault(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: The automatic thresholder utilizes the Default threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
thresholdDefault(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.ThresholdDefault
ThresholdDefault - Class in net.haesleinhuepf.clij2.plugins: ThresholdDefault
ThresholdDefault() - Constructor for class net.haesleinhuepf.clij2.plugins.ThresholdDefault
thresholdHuang(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: The automatic thresholder utilizes the Huang threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
thresholdHuang(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.ThresholdHuang
ThresholdHuang - Class in net.haesleinhuepf.clij2.plugins: ThresholdHuang
ThresholdHuang() - Constructor for class net.haesleinhuepf.clij2.plugins.ThresholdHuang
thresholdIJ_IsoData(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: The automatic thresholder utilizes the IJ_IsoData threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
thresholdIJ_IsoData(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.ThresholdIJ_IsoData
ThresholdIJ_IsoData - Class in net.haesleinhuepf.clij2.plugins: ThresholdIJ_IsoData
ThresholdIJ_IsoData() - Constructor for class net.haesleinhuepf.clij2.plugins.ThresholdIJ_IsoData
thresholdIntermodes(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: The automatic thresholder utilizes the Intermodes threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
thresholdIntermodes(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.ThresholdIntermodes
ThresholdIntermodes - Class in net.haesleinhuepf.clij2.plugins: ThresholdIntermodes
ThresholdIntermodes() - Constructor for class net.haesleinhuepf.clij2.plugins.ThresholdIntermodes
thresholdIsoData(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: The automatic thresholder utilizes the IsoData threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
thresholdIsoData(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.ThresholdIsoData
ThresholdIsoData - Class in net.haesleinhuepf.clij2.plugins: ThresholdIsoData
ThresholdIsoData() - Constructor for class net.haesleinhuepf.clij2.plugins.ThresholdIsoData
thresholdLi(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: The automatic thresholder utilizes the Li threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
thresholdLi(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.ThresholdLi
ThresholdLi - Class in net.haesleinhuepf.clij2.plugins: ThresholdLi
ThresholdLi() - Constructor for class net.haesleinhuepf.clij2.plugins.ThresholdLi
thresholdMaxEntropy(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: The automatic thresholder utilizes the MaxEntropy threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
thresholdMaxEntropy(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.ThresholdMaxEntropy
ThresholdMaxEntropy - Class in net.haesleinhuepf.clij2.plugins: ThresholdMaxEntropy
ThresholdMaxEntropy() - Constructor for class net.haesleinhuepf.clij2.plugins.ThresholdMaxEntropy
thresholdMean(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: The automatic thresholder utilizes the Mean threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
thresholdMean(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.ThresholdMean
ThresholdMean - Class in net.haesleinhuepf.clij2.plugins: ThresholdMean
ThresholdMean() - Constructor for class net.haesleinhuepf.clij2.plugins.ThresholdMean
thresholdMinError(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: The automatic thresholder utilizes the MinError threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
thresholdMinError(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.ThresholdMinError
ThresholdMinError - Class in net.haesleinhuepf.clij2.plugins: ThresholdMinError
ThresholdMinError() - Constructor for class net.haesleinhuepf.clij2.plugins.ThresholdMinError
thresholdMinimum(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: The automatic thresholder utilizes the Minimum threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
thresholdMinimum(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.ThresholdMinimum
ThresholdMinimum - Class in net.haesleinhuepf.clij2.plugins: ThresholdMinimum
ThresholdMinimum() - Constructor for class net.haesleinhuepf.clij2.plugins.ThresholdMinimum
thresholdMoments(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: The automatic thresholder utilizes the Moments threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
thresholdMoments(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.ThresholdMoments
ThresholdMoments - Class in net.haesleinhuepf.clij2.plugins: ThresholdMoments
ThresholdMoments() - Constructor for class net.haesleinhuepf.clij2.plugins.ThresholdMoments
thresholdOtsu(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: The automatic thresholder utilizes the Otsu threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
thresholdOtsu(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.ThresholdOtsu
ThresholdOtsu - Class in net.haesleinhuepf.clij2.plugins: ThresholdOtsu
ThresholdOtsu() - Constructor for class net.haesleinhuepf.clij2.plugins.ThresholdOtsu
thresholdPercentile(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: The automatic thresholder utilizes the Percentile threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
thresholdPercentile(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.ThresholdPercentile
ThresholdPercentile - Class in net.haesleinhuepf.clij2.plugins: ThresholdPercentile
ThresholdPercentile() - Constructor for class net.haesleinhuepf.clij2.plugins.ThresholdPercentile
thresholdRenyiEntropy(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: The automatic thresholder utilizes the RenyiEntropy threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
thresholdRenyiEntropy(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.ThresholdRenyiEntropy
ThresholdRenyiEntropy - Class in net.haesleinhuepf.clij2.plugins: ThresholdRenyiEntropy
ThresholdRenyiEntropy() - Constructor for class net.haesleinhuepf.clij2.plugins.ThresholdRenyiEntropy
thresholdShanbhag(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: The automatic thresholder utilizes the Shanbhag threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
thresholdShanbhag(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.ThresholdShanbhag
ThresholdShanbhag - Class in net.haesleinhuepf.clij2.plugins: ThresholdShanbhag
ThresholdShanbhag() - Constructor for class net.haesleinhuepf.clij2.plugins.ThresholdShanbhag
thresholdTriangle(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: The automatic thresholder utilizes the Triangle threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
thresholdTriangle(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.ThresholdTriangle
ThresholdTriangle - Class in net.haesleinhuepf.clij2.plugins: ThresholdTriangle
ThresholdTriangle() - Constructor for class net.haesleinhuepf.clij2.plugins.ThresholdTriangle
thresholdYen(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: The automatic thresholder utilizes the Yen threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
thresholdYen(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.ThresholdYen
ThresholdYen - Class in net.haesleinhuepf.clij2.plugins: ThresholdYen
ThresholdYen() - Constructor for class net.haesleinhuepf.clij2.plugins.ThresholdYen
topHatBox(ClearCLBuffer, ClearCLBuffer, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Applies a top-hat filter for background subtraction to the input image.
topHatBox(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.TopHatBox
TopHatBox - Class in net.haesleinhuepf.clij2.plugins
TopHatBox() - Constructor for class net.haesleinhuepf.clij2.plugins.TopHatBox
topHatSphere(ClearCLBuffer, ClearCLBuffer, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Applies a top-hat filter for background subtraction to the input image.
topHatSphere(CLIJ2, ClearCLBuffer, ClearCLBuffer, Integer, Integer, Integer) - Static method in class net.haesleinhuepf.clij2.plugins.TopHatSphere
TopHatSphere - Class in net.haesleinhuepf.clij2.plugins
TopHatSphere() - Constructor for class net.haesleinhuepf.clij2.plugins.TopHatSphere
touchMatrixToAdjacencyMatrix(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Converts a touch matrix in an adjacency matrix
touchMatrixToAdjacencyMatrix(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.TouchMatrixToAdjacencyMatrix
TouchMatrixToAdjacencyMatrix - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf April 2020
TouchMatrixToAdjacencyMatrix() - Constructor for class net.haesleinhuepf.clij2.plugins.TouchMatrixToAdjacencyMatrix
touchMatrixToMesh(ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Takes a pointlist with dimensions n*d with n point coordinates in d dimensions and a touch matrix of size n*n to draw lines from all points to points if the corresponding pixel in the touch matrix is 1.
touchMatrixToMesh(CLIJ2, ClearCLBuffer, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.TouchMatrixToMesh
TouchMatrixToMesh - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf November 2019
TouchMatrixToMesh() - Constructor for class net.haesleinhuepf.clij2.plugins.TouchMatrixToMesh
transfer(ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.CLIJ2: Transfer a buffer from a different OpenCLDevice
transferTo(ClearCLBuffer, ClearCLBuffer) - Method in class net.haesleinhuepf.clij2.CLIJ2: Transfer a buffer between different OpenCLDevices
translate2D(ClearCLBuffer, ClearCLBuffer, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Translate an image stack in X and Y.
translate2D(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.Translate2D
Translate2D - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Translate2D() - Constructor for class net.haesleinhuepf.clij2.plugins.Translate2D
translate3D(ClearCLBuffer, ClearCLBuffer, double, double, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Translate an image stack in X, Y and Z.
translate3D(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float, Float, Float) - Static method in class net.haesleinhuepf.clij2.plugins.Translate3D
Translate3D - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
Translate3D() - Constructor for class net.haesleinhuepf.clij2.plugins.Translate3D
transposeXY(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Transpose X and Y axes of an image.
transposeXY(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.TransposeXY
TransposeXY - Class in net.haesleinhuepf.clij2.plugins
TransposeXY() - Constructor for class net.haesleinhuepf.clij2.plugins.TransposeXY
transposeXZ(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Transpose X and Z axes of an image.
transposeXZ(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.TransposeXZ
TransposeXZ - Class in net.haesleinhuepf.clij2.plugins
TransposeXZ() - Constructor for class net.haesleinhuepf.clij2.plugins.TransposeXZ
transposeYZ(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Transpose Y and Z axes of an image.
transposeYZ(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.TransposeYZ
TransposeYZ - Class in net.haesleinhuepf.clij2.plugins
TransposeYZ() - Constructor for class net.haesleinhuepf.clij2.plugins.TransposeYZ
Triangle - net.haesleinhuepf.clij2.plugins.AutoThresholderImageJ1.Method

U

undefinedToZero(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Copies all pixels instead those which are not a number (NaN) or infinity (inf), which are replaced by 0.
undefinedToZero(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.UndefinedToZero
UndefinedToZero - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf June 2020
UndefinedToZero() - Constructor for class net.haesleinhuepf.clij2.plugins.UndefinedToZero
UnsignedByte - Variable in class net.haesleinhuepf.clij2.CLIJ2
UnsignedShort - Variable in class net.haesleinhuepf.clij2.CLIJ2

V

value - Variable in enum net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY
valueOf(String) - Static method in enum net.haesleinhuepf.clij2.plugins.AutoThresholderImageJ1.Method: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY: Returns the enum constant of this type with the specified name.
values() - Static method in enum net.haesleinhuepf.clij2.plugins.AutoThresholderImageJ1.Method: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels.STATISTICS_ENTRY: Returns an array containing the constants of this enum type, in the order they are declared.
varianceOfAllPixels(ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the variance of all pixels in an image.
varianceOfAllPixels(ClearCLImageInterface, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the variance of all pixels in an image.
varianceOfAllPixels(CLIJ2, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.VarianceOfAllPixels
varianceOfAllPixels(CLIJ2, ClearCLImageInterface, Float) - Static method in class net.haesleinhuepf.clij2.plugins.VarianceOfAllPixels
VarianceOfAllPixels - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf September 2019
VarianceOfAllPixels() - Constructor for class net.haesleinhuepf.clij2.plugins.VarianceOfAllPixels
varianceOfMaskedPixels(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the variance in an image, but only in pixels which have non-zero values in another binary mask image.
varianceOfMaskedPixels(ClearCLBuffer, ClearCLBuffer, double) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Determines the variance in an image, but only in pixels which have non-zero values in another binary mask image.
varianceOfMaskedPixels(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.VarianceOfMaskedPixels
varianceOfMaskedPixels(CLIJ2, ClearCLBuffer, ClearCLBuffer, Float) - Static method in class net.haesleinhuepf.clij2.plugins.VarianceOfMaskedPixels
VarianceOfMaskedPixels - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf 12 2018
VarianceOfMaskedPixels() - Constructor for class net.haesleinhuepf.clij2.plugins.VarianceOfMaskedPixels
voronoiLabeling(ClearCLBuffer, ClearCLImageInterface) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Takes a binary image, labels connected components and dilates the regions using a octagon shape until they touch.
voronoiLabeling(CLIJ2, ClearCLBuffer, ClearCLImageInterface) - Static method in class net.haesleinhuepf.clij2.plugins.VoronoiLabeling
VoronoiLabeling - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf March 2020
VoronoiLabeling() - Constructor for class net.haesleinhuepf.clij2.plugins.VoronoiLabeling
voronoiOctagon(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Takes a binary image and dilates the regions using a octagon shape until they touch.
voronoiOctagon(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.VoronoiOctagon
VoronoiOctagon - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf March 2020
VoronoiOctagon() - Constructor for class net.haesleinhuepf.clij2.plugins.VoronoiOctagon

W

waitForKernelFinish - Variable in class net.haesleinhuepf.clij2.CLIJ2
warn(String) - Method in class net.haesleinhuepf.clij2.CLIJ2
watershed(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Apply a binary watershed to a binary image and introduces black pixels between objects.
watershed(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.Watershed
Watershed - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf December 2018
Watershed() - Constructor for class net.haesleinhuepf.clij2.plugins.Watershed
writeValuesToPositions(ClearCLBuffer, ClearCLBuffer) - Method in interface net.haesleinhuepf.clij2.CLIJ2Ops: Takes an image with three/four rows (2D: height = 3; 3D: height = 4): x, y [, z] and v and target image.
writeValuesToPositions(CLIJ2, ClearCLBuffer, ClearCLBuffer) - Static method in class net.haesleinhuepf.clij2.plugins.WriteValuesToPositions
WriteValuesToPositions - Class in net.haesleinhuepf.clij2.plugins: Author: @haesleinhuepf June 2019
WriteValuesToPositions() - Constructor for class net.haesleinhuepf.clij2.plugins.WriteValuesToPositions

Y

Yen - net.haesleinhuepf.clij2.plugins.AutoThresholderImageJ1.Method

_

__enter__() - Method in class net.haesleinhuepf.clij2.CLIJ2
__exit__(Object...) - Method in class net.haesleinhuepf.clij2.CLIJ2

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