Package net.haesleinhuepf.clij2

Class CLIJ2

java.lang.Object

net.haesleinhuepf.clij2.CLIJ2

All Implemented Interfaces:

CLIJ2Ops

public class CLIJ2
extends Object
implements CLIJ2Ops

The CLIJ2 gateway Author: @haesleinhuepf December 2019

Field Summary

Fields

Modifier and Type	Field	Description
protected net.haesleinhuepf.clij.CLIJ	clij
net.haesleinhuepf.clij.coremem.enums.NativeTypeEnum	Float
protected net.haesleinhuepf.clij.clearcl.util.CLKernelExecutor	mCLKernelExecutor
net.haesleinhuepf.clij.coremem.enums.NativeTypeEnum	UnsignedByte
net.haesleinhuepf.clij.coremem.enums.NativeTypeEnum	UnsignedShort
protected boolean	waitForKernelFinish

Constructor Summary

Constructors

Constructor	Description
CLIJ2(net.haesleinhuepf.clij.CLIJ clij)	Deprecated.

Method Summary

Modifier and Type	Method	Description
CLIJ2	__enter__()
void	__exit__(Object... args)
void	activateSizeIndependentKernelCompilation()
void	clear()
static String	clinfo()
void	close()
<T> T	convert(Object object, Class<T> klass)
net.haesleinhuepf.clij.clearcl.ClearCLBuffer	create(double[] dblDimensions)
net.haesleinhuepf.clij.clearcl.ClearCLBuffer	create(long[] dimensions)
net.haesleinhuepf.clij.clearcl.ClearCLImage	create(long[] dimensions, net.haesleinhuepf.clij.clearcl.enums.ImageChannelDataType typeEnum)
net.haesleinhuepf.clij.clearcl.ClearCLBuffer	create(long[] dimensions, net.haesleinhuepf.clij.coremem.enums.NativeTypeEnum typeEnum)
net.haesleinhuepf.clij.clearcl.ClearCLBuffer	create(long dimensionX, long dimensionY)
net.haesleinhuepf.clij.clearcl.ClearCLBuffer	create(long dimensionX, long dimensionY, long dimensionZ)
net.haesleinhuepf.clij.clearcl.ClearCLBuffer	create(net.haesleinhuepf.clij.clearcl.ClearCLBuffer buffer)
net.haesleinhuepf.clij.clearcl.ClearCLImage	create(net.haesleinhuepf.clij.clearcl.ClearCLImage image)
boolean	doTimeTracing()
void	execute(Class anchorClass, String programFilename, String kernelname, long[] dimensions, long[] globalsizes, long[] localSizes, Map<String,Object> parameters)
void	execute(Class anchorClass, String programFilename, String kernelname, long[] dimensions, long[] globalsizes, long[] localSizes, Map<String,Object> parameters, Map<String,Object> constants)
void	execute(Class anchorClass, String programFilename, String kernelname, long[] dimensions, long[] globalsizes, Map<String,Object> parameters)
void	execute(Class anchorClass, String programFilename, String kernelname, long[] dimensions, long[] globalsizes, Map<String,Object> parameters, Map<String,Object> constants)
void	execute(String programFilename, String kernelname, long[] dimensions, long[] globalsizes, Map<String,Object> parameters, Map<String,Object> constants)
void	executeCode(String sourceCode, String kernelname, long[] dimensions, long[] globalsizes, long[] localSizes, Map<String,Object> parameters)
void	executeCode(String sourceCode, String kernelname, long[] dimensions, long[] globalsizes, Map<String,Object> parameters)
void	executeCode(String sourceCode, String kernelname, long[] dimensions, long[] globalsizes, Map<String,Object> parameters, Map<String,Object> constants)
net.haesleinhuepf.clij.clearcl.ClearCLKernel	executeCodeSubsequently(String sourceCode, String pKernelname, long[] dimensions, long[] globalsizes, long[] localSizes, Map<String,Object> parameters, Map<String,Object> constants, net.haesleinhuepf.clij.clearcl.ClearCLKernel kernel)
net.haesleinhuepf.clij.clearcl.ClearCLKernel	executeCodeSubsequently(String sourceCode, String pKernelname, long[] dimensions, long[] globalsizes, Map<String,Object> parameters, Map<String,Object> constants, net.haesleinhuepf.clij.clearcl.ClearCLKernel kernel)
net.haesleinhuepf.clij.clearcl.ClearCLKernel	executeCodeSubsequently(String sourceCode, String pKernelname, long[] dimensions, long[] globalsizes, Map<String,Object> parameters, net.haesleinhuepf.clij.clearcl.ClearCLKernel kernel)
net.haesleinhuepf.clij.clearcl.ClearCLKernel	executeSubsequently(Class anchorClass, String pProgramFilename, String pKernelname, long[] dimensions, long[] globalsizes, long[] localSizes, Map<String,Object> parameters, Map<String,Object> constants, net.haesleinhuepf.clij.clearcl.ClearCLKernel kernel)
net.haesleinhuepf.clij.clearcl.ClearCLKernel	executeSubsequently(Class anchorClass, String pProgramFilename, String pKernelname, long[] dimensions, long[] globalsizes, Map<String,Object> parameters, Map<String,Object> constants, net.haesleinhuepf.clij.clearcl.ClearCLKernel kernel)
net.haesleinhuepf.clij.clearcl.ClearCLKernel	executeSubsequently(Class anchorClass, String pProgramFilename, String pKernelname, long[] dimensions, long[] globalsizes, Map<String,Object> parameters, net.haesleinhuepf.clij.clearcl.ClearCLKernel kernel)
net.haesleinhuepf.clij.CLIJ	getClij()	Deprecated.
net.haesleinhuepf.clij.CLIJ	getCLIJ()
CLIJ2	getCLIJ2()
String	getGPUName()
static CLIJ2	getInstance()
static CLIJ2	getInstance(String id)
double	getOpenCLVersion()
String	getTimeTraces()
boolean	hasImageSupport()
void	invalidateKernelCahe()
boolean	isSizeIndependentKernelCompilation()
ImagePlus	pull(Object object)
ImagePlus	pullBinary(net.haesleinhuepf.clij.clearcl.ClearCLBuffer input)
RandomAccessibleInterval<BitType>	pullBinaryRAI(Object object)
Object	pullMat(net.haesleinhuepf.clij.clearcl.ClearCLBuffer input)
Object	pullMatXYZ(net.haesleinhuepf.clij.clearcl.ClearCLBuffer input)
RandomAccessibleInterval	pullRAI(Object object)
void	pullToRAI(Object object, RandomAccessibleInterval target)
net.haesleinhuepf.clij.clearcl.ClearCLBuffer	push(Object object)
net.haesleinhuepf.clij.clearcl.ClearCLBuffer	pushCurrentSelection(ImagePlus imp)
net.haesleinhuepf.clij.clearcl.ClearCLBuffer	pushCurrentSlice(ImagePlus imp)
net.haesleinhuepf.clij.clearcl.ClearCLBuffer	pushCurrentZStack(ImagePlus imp)
net.haesleinhuepf.clij.clearcl.ClearCLBuffer	pushMat(Object object)
net.haesleinhuepf.clij.clearcl.ClearCLBuffer	pushMatXYZ(Object object)
void	recordMethodEnd(String method)
void	recordMethodStart(String method)
void	release(net.haesleinhuepf.clij.clearcl.interfaces.ClearCLImageInterface image)
String	reportMemory()
void	resetTimeTraces()
void	setDoTimeTracing(boolean doTimeTracing)
void	setKeepReferences(boolean keepReferences)	Deprecated.
void	setWaitForKernelFinish(boolean waitForKernelFinish)
void	show(Object object, String title)
net.haesleinhuepf.clij.clearcl.ClearCLBuffer	transfer(net.haesleinhuepf.clij.clearcl.ClearCLBuffer input)	Transfer a buffer from a different OpenCLDevice
void	transferTo(net.haesleinhuepf.clij.clearcl.ClearCLBuffer input, net.haesleinhuepf.clij.clearcl.ClearCLBuffer output)	Transfer a buffer between different OpenCLDevices
void	warn(String text)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.haesleinhuepf.clij2.CLIJ2Ops

absolute, absoluteDifference, addImageAndScalar, addImages, addImagesWeighted, adjacencyMatrixToTouchMatrix, affineTransform2D, affineTransform2D, affineTransform2D, affineTransform2D, affineTransform2D, affineTransform3D, affineTransform3D, affineTransform3D, affineTransform3D, affineTransform3D, applyVectorField, applyVectorField, applyVectorField2D, applyVectorField3D, argMaximumZProjection, automaticThreshold, automaticThreshold, averageDistanceOfClosestPoints, averageDistanceOfNClosestPoints, averageDistanceOfNFarOffPoints, averageDistanceOfTouchingNeighbors, binaryAnd, binaryEdgeDetection, binaryFillHoles, binaryIntersection, binaryNot, binaryOr, binarySubtract, binaryUnion, binaryXOr, blur, blur, blur2D, blur3D, bottomHatBox, bottomHatSphere, boundingBox, centerOfMass, centroidsOfBackgroundAndLabels, centroidsOfLabels, closeIndexGapsInLabelMap, closingBox, closingDiamond, combineHorizontally, combineVertically, concatenateStacks, connectedComponentsLabeling, connectedComponentsLabelingBox, connectedComponentsLabelingBox, connectedComponentsLabelingDiamond, connectedComponentsLabelingDiamond, convolve, copy, copySlice, countNonZeroPixels, countNonZeroPixels2DSphere, countNonZeroPixelsLocally, countNonZeroPixelsLocallySliceBySlice, countNonZeroPixelsSliceBySliceSphere, countNonZeroVoxels3DSphere, countNonZeroVoxelsLocally, countTouchingNeighbors, crop, crop, crop2D, crop3D, customOperation, depthColorProjection, detectLabelEdges, detectMaxima2DBox, detectMaxima3DBox, detectMaximaBox, detectMaximaBox, detectMaximaSliceBySliceBox, detectMinima2DBox, detectMinima3DBox, detectMinimaBox, detectMinimaBox, detectMinimaSliceBySliceBox, differenceOfGaussian, differenceOfGaussian, differenceOfGaussian2D, differenceOfGaussian3D, dilateBox, dilateBoxSliceBySlice, dilateSphere, dilateSphereSliceBySlice, distanceMap, distanceMatrixToMesh, divideImages, downsample, downsample, downsample2D, downsample3D, downsampleSliceBySliceHalfMedian, drawBox, drawBox, drawBox, drawLine, drawLine, drawSphere, drawSphere, drawSphere, drawSphere, entropyBox, entropyBox, equal, equalConstant, equalizeMeanIntensitiesOfSlices, erodeBox, erodeBoxSliceBySlice, erodeSphere, erodeSphereSliceBySlice, excludeLabels, excludeLabelsOnEdges, excludeLabelsOnSurface, excludeLabelsSubSurface, excludeLabelsWithValuesOutOfRange, excludeLabelsWithValuesWithinRange, exponential, extendLabelingViaVoronoi, fillHistogram, flip, flip, flip2D, flip3D, floodFillDiamond, gaussianBlur, gaussianBlur, gaussianBlur2D, gaussianBlur3D, generateBinaryOverlapMatrix, generateDistanceMatrix, generateJaccardIndexMatrix, generateParametricImage, generateParametricImageFromResultsTableColumn, generateTouchCountMatrix, generateTouchMatrix, getAutomaticThreshold, getAutomaticThreshold, getBoundingBox, getCenterOfMass, getDimensions, getJaccardIndex, getMaximumOfAllPixels, getMeanOfAllPixels, getMeanOfMaskedPixels, getMinimumOfAllPixels, getSize, getSorensenDiceCoefficient, getSumOfAllPixels, gradientX, gradientY, gradientZ, greater, greaterConstant, greaterOrEqual, greaterOrEqualConstant, histogram, histogram, histogram, histogram, histogram, image2DToResultsTable, image2DToResultsTable, imageToStack, invert, jaccardIndex, labelledSpotsToPointList, labelSpots, labelToMask, labelVoronoiOctagon, laplaceBox, laplaceSphere, localThreshold, logarithm, mask, maskLabel, maskStackWithPlane, matrixEqual, maximum2DBox, maximum2DSphere, maximum3DBox, maximum3DSliceBySliceSphere, maximum3DSphere, maximumBox, maximumBox, maximumBox, maximumDiamond, maximumImageAndScalar, maximumImages, maximumOctagon, maximumOfAllPixels, maximumOfMaskedPixels, maximumOfTouchingNeighbors, maximumXProjection, maximumYProjection, maximumZProjection, maximumZProjectionBounded, mean2DBox, mean2DSphere, mean3DBox, mean3DSphere, meanBox, meanClosestSpotDistance, meanClosestSpotDistance, meanOfAllPixels, meanOfMaskedPixels, meanOfPixelsAboveThreshold, meanOfTouchingNeighbors, meanSliceBySliceSphere, meanSquaredError, meanXProjection, meanYProjection, meanZProjection, meanZProjectionBounded, median2DBox, median2DSphere, median3DBox, median3DSliceBySliceBox, median3DSliceBySliceSphere, median3DSphere, medianOfTouchingNeighbors, medianZProjection, minimum2DBox, minimum2DSphere, minimum3DBox, minimum3DSliceBySliceSphere, minimum3DSphere, minimumBox, minimumBox, minimumBox, minimumDiamond, minimumDistanceOfTouchingNeighbors, minimumImageAndScalar, minimumImages, minimumOctagon, minimumOfAllPixels, minimumOfMaskedPixels, minimumOfTouchingNeighbors, minimumXProjection, minimumYProjection, minimumZProjection, minimumZProjectionBounded, minimumZProjectionThresholdedBounded, multiplyImageAndCoordinate, multiplyImageAndScalar, multiplyImages, multiplyImageStackWithScalars, multiplyImageStackWithScalars, multiplyMatrix, multiplySliceBySliceWithScalars, multiplyStackWithPlane, nClosestDistances, nClosestPoints, neighborsOfNeighbors, nonzeroMaximumBox, nonzeroMaximumBox, nonzeroMaximumBox, nonzeroMaximumDiamond, nonzeroMaximumDiamond, nonzeroMaximumDiamond, nonzeroMinimumBox, nonzeroMinimumBox, nonzeroMinimumBox, nonzeroMinimumDiamond, nonzeroMinimumDiamond, nonzeroMinimumDiamond, notEqual, notEqualConstant, onlyzeroOverwriteMaximumBox, onlyzeroOverwriteMaximumBox, onlyzeroOverwriteMaximumBox, onlyzeroOverwriteMaximumDiamond, onlyzeroOverwriteMaximumDiamond, onlyzeroOverwriteMaximumDiamond, openingBox, openingDiamond, paste, paste, paste2D, paste3D, pointIndexListToMesh, pointlistToLabelledSpots, power, powerImages, print, pullAsROI, pullLabelsToROIList, pullLabelsToROIList, pullLabelsToROIManager, pullLabelsToROIManager, pullString, pullToResultsTable, pullToResultsTable, pushArray, pushArray, pushResultsTable, pushResultsTableColumn, pushString, pushString, radialProjection, reduceStack, replaceIntensities, replaceIntensity, replacePixelsIfZero, resample, resample2D, resample3D, resliceBottom, resliceLeft, resliceRadial, resliceRadial, resliceRadial, resliceRight, resliceTop, resultsTableColumnToImage, resultsTableToImage2D, rotate2D, rotate3D, rotateClockwise, rotateCounterClockwise, rotateLeft, rotateRight, saveAsTIF, scale, scale, scale, scale2D, scale2D, scale3D, scale3D, set, setColumn, setImageBorders, setNonZeroPixelsToPixelIndex, setPlane, setRampX, setRampY, setRampZ, setRandom, setRandom, setRow, setWhereXequalsY, setWhereXgreaterThanY, setWhereXsmallerThanY, shiftIntensitiesToCloseGaps, shortestDistances, smaller, smallerConstant, smallerOrEqual, smallerOrEqualConstant, sobel, sorensenDiceCoefficient, spotsToPointList, squaredDifference, standardDeviationOfAllPixels, standardDeviationOfAllPixels, standardDeviationOfMaskedPixels, standardDeviationOfMaskedPixels, standardDeviationOfTouchingNeighbors, standardDeviationZProjection, statisticsOfBackgroundAndLabelledPixels, statisticsOfBackgroundAndLabelledPixels, statisticsOfImage, statisticsOfLabelledPixels, statisticsOfLabelledPixels, statisticsOfLabelledPixels, statisticsOfLabelledPixels, statisticsOfLabelledPixels_single_threaded, subtract, subtractImageFromScalar, subtractImages, sumImageSliceBySlice, sumImageSliceBySlice, sumOfAllPixels, sumPixels, sumPixelsSliceByslice, sumXProjection, sumYProjection, sumZProjection, threshold, thresholdDefault, thresholdHuang, thresholdIJ_IsoData, thresholdIntermodes, thresholdIsoData, thresholdLi, thresholdMaxEntropy, thresholdMean, thresholdMinError, thresholdMinimum, thresholdMoments, thresholdOtsu, thresholdPercentile, thresholdRenyiEntropy, thresholdShanbhag, thresholdTriangle, thresholdYen, topHatBox, topHatSphere, touchMatrixToAdjacencyMatrix, touchMatrixToMesh, translate2D, translate3D, transposeXY, transposeXZ, transposeYZ, undefinedToZero, varianceOfAllPixels, varianceOfAllPixels, varianceOfMaskedPixels, varianceOfMaskedPixels, voronoiLabeling, voronoiOctagon, watershed, writeValuesToPositions

Field Detail

clij

protected net.haesleinhuepf.clij.CLIJ clij

waitForKernelFinish

protected boolean waitForKernelFinish

mCLKernelExecutor

protected final net.haesleinhuepf.clij.clearcl.util.CLKernelExecutor mCLKernelExecutor

Float

public final net.haesleinhuepf.clij.coremem.enums.NativeTypeEnum Float

UnsignedShort

public final net.haesleinhuepf.clij.coremem.enums.NativeTypeEnum UnsignedShort

UnsignedByte

public final net.haesleinhuepf.clij.coremem.enums.NativeTypeEnum UnsignedByte

Constructor Detail

CLIJ2

@Deprecated
public CLIJ2(net.haesleinhuepf.clij.CLIJ clij)

Deprecated.

Marking this as deprecated as it will very likely go away before release. Use CLIJx.getInstance() instead.

Parameters:

clij -

Method Detail

getCLIJ

public net.haesleinhuepf.clij.CLIJ getCLIJ()

Specified by:

getCLIJ in interface CLIJ2Ops

getCLIJ2

public CLIJ2 getCLIJ2()

Specified by:

getCLIJ2 in interface CLIJ2Ops

getInstance

public static CLIJ2 getInstance()

getInstance

public static CLIJ2 getInstance(String id)

clinfo

public static String clinfo()

getGPUName

public String getGPUName()

getOpenCLVersion

public double getOpenCLVersion()

push

public net.haesleinhuepf.clij.clearcl.ClearCLBuffer push(Object object)

pushCurrentZStack

public net.haesleinhuepf.clij.clearcl.ClearCLBuffer pushCurrentZStack(ImagePlus imp)

pushCurrentSlice

public net.haesleinhuepf.clij.clearcl.ClearCLBuffer pushCurrentSlice(ImagePlus imp)

pushCurrentSelection

public net.haesleinhuepf.clij.clearcl.ClearCLBuffer pushCurrentSelection(ImagePlus imp)

pull

public ImagePlus pull(Object object)

pullRAI

public RandomAccessibleInterval pullRAI(Object object)

pullBinaryRAI

public RandomAccessibleInterval<BitType> pullBinaryRAI(Object object)

pushMatXYZ

public net.haesleinhuepf.clij.clearcl.ClearCLBuffer pushMatXYZ(Object object)

pushMat

public net.haesleinhuepf.clij.clearcl.ClearCLBuffer pushMat(Object object)

pullMat

public Object pullMat(net.haesleinhuepf.clij.clearcl.ClearCLBuffer input)

pullMatXYZ

public Object pullMatXYZ(net.haesleinhuepf.clij.clearcl.ClearCLBuffer input)

pullToRAI

public void pullToRAI(Object object,
                      RandomAccessibleInterval target)

show

public void show(Object object,
                 String title)

convert

public <T> T convert(Object object,
                     Class<T> klass)

create

public net.haesleinhuepf.clij.clearcl.ClearCLBuffer create(net.haesleinhuepf.clij.clearcl.ClearCLBuffer buffer)

create

public net.haesleinhuepf.clij.clearcl.ClearCLImage create(net.haesleinhuepf.clij.clearcl.ClearCLImage image)

create

public net.haesleinhuepf.clij.clearcl.ClearCLBuffer create(long dimensionX,
                                                           long dimensionY,
                                                           long dimensionZ)

create

public net.haesleinhuepf.clij.clearcl.ClearCLBuffer create(long dimensionX,
                                                           long dimensionY)

create

public net.haesleinhuepf.clij.clearcl.ClearCLBuffer create(long[] dimensions)

create

public net.haesleinhuepf.clij.clearcl.ClearCLBuffer create(double[] dblDimensions)

create

public net.haesleinhuepf.clij.clearcl.ClearCLBuffer create(long[] dimensions,
                                                           net.haesleinhuepf.clij.coremem.enums.NativeTypeEnum typeEnum)

create

public net.haesleinhuepf.clij.clearcl.ClearCLImage create(long[] dimensions,
                                                          net.haesleinhuepf.clij.clearcl.enums.ImageChannelDataType typeEnum)

warn

public void warn(String text)

execute

public void execute(String programFilename,
                    String kernelname,
                    long[] dimensions,
                    long[] globalsizes,
                    Map<String,Object> parameters,
                    Map<String,Object> constants)

execute

public void execute(Class anchorClass,
                    String programFilename,
                    String kernelname,
                    long[] dimensions,
                    long[] globalsizes,
                    Map<String,Object> parameters,
                    Map<String,Object> constants)

execute

public void execute(Class anchorClass,
                    String programFilename,
                    String kernelname,
                    long[] dimensions,
                    long[] globalsizes,
                    Map<String,Object> parameters)

execute

public void execute(Class anchorClass,
                    String programFilename,
                    String kernelname,
                    long[] dimensions,
                    long[] globalsizes,
                    long[] localSizes,
                    Map<String,Object> parameters)

execute

public void execute(Class anchorClass,
                    String programFilename,
                    String kernelname,
                    long[] dimensions,
                    long[] globalsizes,
                    long[] localSizes,
                    Map<String,Object> parameters,
                    Map<String,Object> constants)

executeSubsequently

public net.haesleinhuepf.clij.clearcl.ClearCLKernel executeSubsequently(Class anchorClass,
                                                                        String pProgramFilename,
                                                                        String pKernelname,
                                                                        long[] dimensions,
                                                                        long[] globalsizes,
                                                                        Map<String,Object> parameters,
                                                                        net.haesleinhuepf.clij.clearcl.ClearCLKernel kernel)

executeSubsequently

public net.haesleinhuepf.clij.clearcl.ClearCLKernel executeSubsequently(Class anchorClass,
                                                                        String pProgramFilename,
                                                                        String pKernelname,
                                                                        long[] dimensions,
                                                                        long[] globalsizes,
                                                                        Map<String,Object> parameters,
                                                                        Map<String,Object> constants,
                                                                        net.haesleinhuepf.clij.clearcl.ClearCLKernel kernel)

executeSubsequently

public net.haesleinhuepf.clij.clearcl.ClearCLKernel executeSubsequently(Class anchorClass,
                                                                        String pProgramFilename,
                                                                        String pKernelname,
                                                                        long[] dimensions,
                                                                        long[] globalsizes,
                                                                        long[] localSizes,
                                                                        Map<String,Object> parameters,
                                                                        Map<String,Object> constants,
                                                                        net.haesleinhuepf.clij.clearcl.ClearCLKernel kernel)

executeCode

public void executeCode(String sourceCode,
                        String kernelname,
                        long[] dimensions,
                        long[] globalsizes,
                        Map<String,Object> parameters,
                        Map<String,Object> constants)

executeCode

public void executeCode(String sourceCode,
                        String kernelname,
                        long[] dimensions,
                        long[] globalsizes,
                        Map<String,Object> parameters)

executeCode

public void executeCode(String sourceCode,
                        String kernelname,
                        long[] dimensions,
                        long[] globalsizes,
                        long[] localSizes,
                        Map<String,Object> parameters)

executeCodeSubsequently

public net.haesleinhuepf.clij.clearcl.ClearCLKernel executeCodeSubsequently(String sourceCode,
                                                                            String pKernelname,
                                                                            long[] dimensions,
                                                                            long[] globalsizes,
                                                                            Map<String,Object> parameters,
                                                                            net.haesleinhuepf.clij.clearcl.ClearCLKernel kernel)

executeCodeSubsequently

public net.haesleinhuepf.clij.clearcl.ClearCLKernel executeCodeSubsequently(String sourceCode,
                                                                            String pKernelname,
                                                                            long[] dimensions,
                                                                            long[] globalsizes,
                                                                            Map<String,Object> parameters,
                                                                            Map<String,Object> constants,
                                                                            net.haesleinhuepf.clij.clearcl.ClearCLKernel kernel)

executeCodeSubsequently

public net.haesleinhuepf.clij.clearcl.ClearCLKernel executeCodeSubsequently(String sourceCode,
                                                                            String pKernelname,
                                                                            long[] dimensions,
                                                                            long[] globalsizes,
                                                                            long[] localSizes,
                                                                            Map<String,Object> parameters,
                                                                            Map<String,Object> constants,
                                                                            net.haesleinhuepf.clij.clearcl.ClearCLKernel kernel)

isSizeIndependentKernelCompilation

public boolean isSizeIndependentKernelCompilation()

activateSizeIndependentKernelCompilation

public void activateSizeIndependentKernelCompilation()

setWaitForKernelFinish

public void setWaitForKernelFinish(boolean waitForKernelFinish)

getClij

@Deprecated
public net.haesleinhuepf.clij.CLIJ getClij()

Deprecated.

setKeepReferences

@Deprecated
public void setKeepReferences(boolean keepReferences)

Deprecated.

This method is for debugging purposes only

Parameters:

keepReferences -

release

public void release(net.haesleinhuepf.clij.clearcl.interfaces.ClearCLImageInterface image)

clear

public void clear()

reportMemory

public String reportMemory()

close

public void close()

__enter__

public CLIJ2 __enter__()

__exit__

public void __exit__(Object... args)

hasImageSupport

public boolean hasImageSupport()

pullBinary

public ImagePlus pullBinary(net.haesleinhuepf.clij.clearcl.ClearCLBuffer input)

invalidateKernelCahe

public void invalidateKernelCahe()

transfer

public net.haesleinhuepf.clij.clearcl.ClearCLBuffer transfer(net.haesleinhuepf.clij.clearcl.ClearCLBuffer input)

Transfer a buffer from a different OpenCLDevice

Parameters:

input -

Returns:

transferTo

public void transferTo(net.haesleinhuepf.clij.clearcl.ClearCLBuffer input,
                       net.haesleinhuepf.clij.clearcl.ClearCLBuffer output)

Transfer a buffer between different OpenCLDevices

Parameters:

input -

output -

doTimeTracing

public boolean doTimeTracing()

Specified by:

doTimeTracing in interface CLIJ2Ops

setDoTimeTracing

public void setDoTimeTracing(boolean doTimeTracing)

getTimeTraces

public String getTimeTraces()

recordMethodStart

public void recordMethodStart(String method)

Specified by:

recordMethodStart in interface CLIJ2Ops

recordMethodEnd

public void recordMethodEnd(String method)

Specified by:

recordMethodEnd in interface CLIJ2Ops

resetTimeTraces

public void resetTimeTraces()