Uses of Class
net.haesleinhuepf.clij2.AbstractCLIJ2Plugin

Packages that use AbstractCLIJ2Plugin

Package	Description
net.haesleinhuepf.clij2.plugins

Uses of AbstractCLIJ2Plugin in net.haesleinhuepf.clij2.plugins

Subclasses of AbstractCLIJ2Plugin in net.haesleinhuepf.clij2.plugins

Modifier and Type	Class	Description
class	Absolute	Author: @haesleinhuepf November 2019
class	AbsoluteDifference	Author: @haesleinhuepf June 2020
class	AddImageAndScalar	Author: @haesleinhuepf December 2018
class	AddImages	Author: @haesleinhuepf 12 2018
class	AddImagesWeighted	Author: @haesleinhuepf December 2018
class	AdjacencyMatrixToTouchMatrix	Author: @haesleinhuepf April 2020
class	AffineTransform	Deprecated.
class	AffineTransform2D	Author: @haesleinhuepf December 2019
class	AffineTransform3D	Author: @haesleinhuepf December 2019
class	ApplyVectorField2D	Author: @haesleinhuepf 12 2018
class	ApplyVectorField3D	Author: @haesleinhuepf 12 2018
class	ArgMaximumZProjection	Author: @haesleinhuepf December 2018
class	AutomaticThreshold	AutomaticThreshold
class	AverageDistanceOfNClosestPoints
class	AverageDistanceOfNFarOffPoints
class	AverageDistanceOfTouchingNeighbors
class	BinaryAnd	Author: @haesleinhuepf 12 2018
class	BinaryEdgeDetection	Author: @haesleinhuepf September 2019
class	BinaryFillHoles	Author: @haesleinhuepf March 2020
class	BinaryIntersection
class	BinaryNot	Author: @haesleinhuepf 12 2018
class	BinaryOr	Author: @haesleinhuepf 12 2018
class	BinarySubtract	Author: @haesleinhuepf September 2019
class	BinaryUnion
class	BinaryXOr	Author: @haesleinhuepf 12 2018
class	Blur2D	Deprecated.
class	Blur3D	Deprecated.
class	Blur3DSliceBySlice	Deprecated.
class	BottomHatBox
class	BottomHatSphere
class	BoundingBox	Author: @haesleinhuepf December 2018
class	CenterOfMass	Author: @haesleinhuepf December 2018
class	CentroidsOfBackgroundAndLabels	Author: @haesleinhuepf July 2020
class	CentroidsOfLabels	Author: @haesleinhuepf December 2018
class	Clear	Author: @haesleinhuepf 12 2018
class	ClInfo	Author: @haesleinhuepf 12 2018
class	CloseIndexGapsInLabelMap	ConnectedComponentsLabeling
class	ClosingBox
class	ClosingDiamond
class	CombineHorizontally	Author: @haesleinhuepf May 2020
class	CombineVertically	Author: @haesleinhuepf May 2020
class	ConcatenateStacks	Author: @haesleinhuepf March 2020
class	ConnectedComponentsLabeling	Deprecated.
class	ConnectedComponentsLabelingBox	ConnectedComponentsLabeling
class	ConnectedComponentsLabelingDiamond	ConnectedComponentsLabeling
class	ConvertFloat	Author: @haesleinhuepf 12 2018
class	ConvertUInt16	Author: @haesleinhuepf 12 2018
class	ConvertUInt8	Author: @haesleinhuepf 12 2018
class	Convolve	Author: @haesleinhuepf December 2018
class	Copy	Author: @haesleinhuepf 12 2018
class	CopySlice	Author: @haesleinhuepf December 2018
class	CountNonZeroPixels	Author: @haesleinhuepf June 2019
class	CountNonZeroPixels2DSphere	Author: @haesleinhuepf December 2018
class	CountNonZeroPixelsSliceBySliceSphere	Author: @haesleinhuepf December 2018
class	CountNonZeroVoxels3DSphere	Author: @haesleinhuepf December 2018
class	CountTouchingNeighbors	Author: @haesleinhuepf October 2019
class	Create2D	Release
class	Create3D	Release
class	Crop2D	Author: @haesleinhuepf December 2018
class	Crop3D	Author: @haesleinhuepf December 2018
class	CustomOperation	Author: @haesleinhuepf
class	DepthColorProjection	Author: @haesleinhuepf April 2020
class	DetectLabelEdges	Author: @haesleinhuepf October 2019
class	DetectMaxima2DBox	Author: @haesleinhuepf May 2020
class	DetectMaxima3DBox	Author: @haesleinhuepf May 2020
class	DetectMaximaBox	Deprecated.
class	DetectMaximaSliceBySliceBox	Author: @haesleinhuepf December 2018
class	DetectMinima2DBox	Author: @haesleinhuepf May 2020
class	DetectMinima3DBox	Author: @haesleinhuepf May 2020
class	DetectMinimaBox	Deprecated.
class	DetectMinimaSliceBySliceBox	Author: @haesleinhuepf December 2018
class	DifferenceOfGaussian2D
class	DifferenceOfGaussian3D
class	DilateBox	Author: @haesleinhuepf 12 2018
class	DilateBoxSliceBySlice	Author: @haesleinhuepf 12 2018
class	DilateSphere	Author: @haesleinhuepf 12 2018
class	DilateSphereSliceBySlice	Author: @haesleinhuepf 12 2018
class	DistanceMap	Author: @haesleinhuepf September 2019
class	DistanceMatrixToMesh	Author: @haesleinhuepf December 2019
class	DivideImages	Author: @haesleinhuepf 12 2018
class	Downsample2D	Author: @haesleinhuepf 12 2018
class	Downsample3D	Author: @haesleinhuepf 12 2018
class	DownsampleSliceBySliceHalfMedian	Author: @haesleinhuepf 12 2018
class	DrawBox	DrawLine
class	DrawLine	DrawLine
class	DrawSphere	DrawLine
class	EntropyBox
class	Equal	Author: @haesleinhuepf August 2019
class	EqualConstant	Author: @haesleinhuepf August 2019
class	EqualizeMeanIntensitiesOfSlices
class	ErodeBox	Author: @haesleinhuepf 12 2018
class	ErodeBoxSliceBySlice	Author: @haesleinhuepf 12 2018
class	ErodeSphere	Author: @haesleinhuepf 12 2018
class	ErodeSphereSliceBySlice	Author: @haesleinhuepf 12 2018
class	ExcludeLabels	Author: @haesleinhuepf April 2020
class	ExcludeLabelsOnEdges	Author: @haesleinhuepf June 2019
class	ExcludeLabelsOnSurface	Author: @haesleinhuepf June 2019
class	ExcludeLabelsSubSurface	Author: @haesleinhuepf June 2019
class	ExcludeLabelsWithValuesOutOfRange	Author: @haesleinhuepf May 2020
class	ExcludeLabelsWithValuesWithinRange	Author: @haesleinhuepf May 2020
class	Exponential	Based on net.haesleinhuepf.clij.macro.modules.Power.java Author: @haesleinhuepf December 2018 modified by: @phaub July 2019
class	ExtendLabelingViaVoronoi	Author: @haesleinhuepf June 2020
class	Flip2D	Author: @haesleinhuepf 12 2018
class	Flip3D	Author: @haesleinhuepf 12 2018
class	FloodFillDiamond	Author: @haesleinhuepf March 2020
class	GaussianBlur2D	Author: @haesleinhuepf 12 2018
class	GaussianBlur3D	Author: @haesleinhuepf 12 2018
class	GenerateBinaryOverlapMatrix	Author: @haesleinhuepf October 2019
class	GenerateDistanceMatrix	Author: @haesleinhuepf December 2018
class	GenerateJaccardIndexMatrix	Author: @haesleinhuepf June 2020
class	GenerateParametricImage
class	GenerateParametricImageFromResultsTableColumn
class	GenerateTouchCountMatrix	Author: @haesleinhuepf June 2020
class	GenerateTouchMatrix	Author: @haesleinhuepf October 2019
class	GetAutomaticThreshold	AutomaticThreshold
class	GetBoundingBox	Author: @haesleinhuepf April 2020
class	GetCenterOfMass	Author: @haesleinhuepf April 2020
class	GetDimensions	Author: @haesleinhuepf June 2019
class	GetGPUProperties	Author: @haesleinhuepf September 2019
class	GetJaccardIndex	Author: @haesleinhuepf April 2020
class	GetMaximumOfAllPixels	Author: @haesleinhuepf April 2020
class	GetMeanOfAllPixels	Author: @haesleinhuepf April 2020
class	GetMeanOfMaskedPixels	Author: @haesleinhuepf August 2020
class	GetMeanSquaredError	Author: @haesleinhuepf April 2020
class	GetMinimumOfAllPixels	Author: @haesleinhuepf April 2020
class	GetSize	Deprecated.
class	GetSorensenDiceCoefficient	Author: @haesleinhuepf April 2020
class	GetSumOfAllPixels	Author: @haesleinhuepf April 2020
class	GetTimeTracing	Author: @haesleinhuepf April 2020
class	GPUProperties	Author: @haesleinhuepf April 2020
class	GradientX	Author: @haesleinhuepf 12 2018
class	GradientY	Author: @haesleinhuepf 12 2018
class	GradientZ	Author: @haesleinhuepf 12 2018
class	Greater	Author: @haesleinhuepf August 2019
class	GreaterConstant	Author: @haesleinhuepf August 2019
class	GreaterOrEqual	Author: @haesleinhuepf August 2019
class	GreaterOrEqualConstant	Author: @haesleinhuepf August 2019
class	Help	Author: @haesleinhuepf 12 2018
class	Histogram	Author: @haesleinhuepf December 2019
class	Image2DToResultsTable	Deprecated.
class	ImageToStack	Author: @haesleinhuepf February 2020
class	InvalidateKernelCache	Author: @haesleinhuepf 12 2018
class	Invert	Author: @haesleinhuepf 12 2018
class	JaccardIndex	Author: @haesleinhuepf July 2019
class	LabelCentroidsToPointList
class	LabelledSpotsToPointList
class	LabelSpots
class	LabelToMask	Author: @haesleinhuepf August 2019
class	LabelVoronoiOctagon	Author: @haesleinhuepf April 2020
class	LaplaceBox
class	LaplaceDiamond
class	ListAvailableGPUs	Author: @haesleinhuepf September 2019
class	LocalThreshold	Author: @haesleinhuepf 12 2018
class	Logarithm	Based on net.haesleinhuepf.clij.macro.modules.Power.java Author: @haesleinhuepf December 2018 modified by: @phaub July 2019
class	Mask	Author: @haesleinhuepf 12 2018
class	MaskLabel	Author: @haesleinhuepf 12 2018
class	MaskStackWithPlane	Author: @haesleinhuepf 12 2018
class	MatrixEqual
class	Maximum2DBox	Author: @haesleinhuepf 12 2018
class	Maximum2DSphere	Author: @haesleinhuepf 12 2018
class	Maximum3DBox	Author: @haesleinhuepf 12 2018
class	Maximum3DSphere	Author: @haesleinhuepf 12 2018
class	MaximumImageAndScalar	Author: @haesleinhuepf 12 2018
class	MaximumImages	Author: @haesleinhuepf 12 2018
class	MaximumOctagon	Author: @haesleinhuepf December 2019
class	MaximumOfAllPixels	Author: @haesleinhuepf December 2018
class	MaximumOfMaskedPixels	Author: @haesleinhuepf 12 2018
class	MaximumOfTouchingNeighbors
class	MaximumSliceBySliceSphere	Author: @haesleinhuepf 12 2018
class	MaximumXProjection	Author: @haesleinhuepf December 2018
class	MaximumYProjection	Author: @haesleinhuepf December 2018
class	MaximumZProjection	Author: @haesleinhuepf December 2018
class	MaximumZProjectionBounded	Author: @haesleinhuepf December 2019
class	Mean2DBox	Author: @haesleinhuepf 12 2018
class	Mean2DSphere	Author: @haesleinhuepf December 2018
class	Mean3DBox	Author: @haesleinhuepf 12 2018
class	Mean3DSphere	Author: @haesleinhuepf 12 2018
class	MeanClosestSpotDistance	Author: @haesleinhuepf July 2019
class	MeanOfAllPixels	Author: @haesleinhuepf December 2018
class	MeanOfMaskedPixels	Author: @haesleinhuepf 12 2018
class	MeanOfPixelsAboveThreshold	Author: @haesleinhuepf 12 2018
class	MeanOfTouchingNeighbors
class	MeanSliceBySliceSphere	Author: @haesleinhuepf 12 2018
class	MeanSquaredError	Author: @haesleinhuepf December 2018
class	MeanXProjection	Author: @haesleinhuepf June 2020
class	MeanYProjection	Author: @haesleinhuepf June 2020
class	MeanZProjection	Author: @haesleinhuepf December 2018
class	Median2DBox	Author: @haesleinhuepf 12 2018
class	Median2DSphere	Author: @haesleinhuepf 12 2018
class	Median3DBox	Author: @haesleinhuepf 12 2018
class	Median3DSphere	Author: @haesleinhuepf 12 2018
class	MedianOfTouchingNeighbors
class	MedianSliceBySliceBox	Author: @haesleinhuepf 12 2018
class	MedianSliceBySliceSphere	Author: @haesleinhuepf 12 2018
class	MedianZProjection	Author: @haesleinhuepf June 2019
class	Minimum2DBox	Author: @haesleinhuepf 12 2018
class	Minimum2DSphere	Author: @haesleinhuepf 12 2018
class	Minimum3DBox	Author: @haesleinhuepf 12 2018
class	Minimum3DSphere	Author: @haesleinhuepf 12 2018
class	MinimumDistanceOfTouchingNeighbors
class	MinimumImageAndScalar	Author: @haesleinhuepf 12 2018
class	MinimumImages	Author: @haesleinhuepf 12 2018
class	MinimumOctagon	Author: @haesleinhuepf December 2019
class	MinimumOfAllPixels	Author: @haesleinhuepf December 2018
class	MinimumOfMaskedPixels	Author: @haesleinhuepf 12 2018
class	MinimumOfTouchingNeighbors
class	MinimumSliceBySliceSphere	Author: @haesleinhuepf 12 2018
class	MinimumXProjection	Author: @haesleinhuepf June 2020
class	MinimumYProjection	Author: @haesleinhuepf June 2020
class	MinimumZProjection	Author: @haesleinhuepf December 2018
class	MinimumZProjectionBounded	Author: @haesleinhuepf December 2019
class	MinimumZProjectionThresholdedBounded	Author: @haesleinhuepf December 2019
class	MultiplyImageAndCoordinate	Author: @haesleinhuepf December 2018
class	MultiplyImageAndScalar	Author: @haesleinhuepf December 2018
class	MultiplyImages	Author: @haesleinhuepf 12 2018
class	MultiplyImageStackWithScalars	Author: @haesleinhuepf December 2018
class	MultiplyMatrix	Author: @haesleinhuepf August 2019
class	MultiplyStackWithPlane	Author: @haesleinhuepf December 2018
class	NClosestDistances
class	NClosestPoints
class	NeighborsOfNeighbors	Author: @haesleinhuepf May 2020
class	NonzeroMaximumBox
class	NonzeroMaximumDiamond
class	NonzeroMinimumBox
class	NonzeroMinimumDiamond
class	NotEqual	Author: @haesleinhuepf August 2019
class	NotEqualConstant	Author: @haesleinhuepf August 2019
class	OnlyzeroOverwriteMaximumBox
class	OnlyzeroOverwriteMaximumDiamond
class	OpeningBox
class	OpeningDiamond
class	Paste2D	Author: @haesleinhuepf December 2018
class	Paste3D	Author: @haesleinhuepf December 2018
class	PointIndexListToMesh	PointIndexListToMesh
class	PointlistToLabelledSpots	Author: @haesleinhuepf April 2020
class	Power	Author: @haesleinhuepf December 2018
class	PowerImages	Author: @haesleinhuepf August 2019
class	Print	Author: @haesleinhuepf March 2020 in Bordeaux
class	Pull	Release
class	PullAsROI
class	PullBinary	PullBinary
class	PullLabelsToROIList
class	PullLabelsToROIManager
class	PullString	Author: @haesleinhuepf April 2020
class	PullToCurrentSlice
class	PullToCurrentSliceSelection
class	PullToResultsTable	Author: @haesleinhuepf April 2020
class	PullToROIManager
class	Push	Release
class	PushArray	Author: @haesleinhuepf September 2019
class	PushCurrentSelection	Release
class	PushCurrentSlice	Release
class	PushCurrentSliceSelection	Release
class	PushCurrentZStack	Release
class	PushResultsTable	Author: @haesleinhuepf April 2020
class	PushResultsTableColumn	Author: @haesleinhuepf April 2020
class	PushString	Author: @haesleinhuepf April 2020
class	ReduceStack	Author: @haesleinhuepf May 2020
class	Release	Release
class	ReplaceIntensities
class	ReplaceIntensity
class	ReplacePixelsIfZero	Author: @haesleinhuepf June 2020
class	ReportMemory	Author: @haesleinhuepf 12 2018
class	Resample	Author: @haesleinhuepf 12 2018
class	ResliceBottom	Author: @haesleinhuepf 12 2018
class	ResliceLeft	Author: @haesleinhuepf 12 2018
class	ResliceRadial	ResliceRadial
class	ResliceRadialTop	ResliceRadial
class	ResliceRight	Author: @haesleinhuepf 12 2018
class	ResliceTop	Author: @haesleinhuepf 12 2018
class	ResultsTableColumnToImage	Author: @haesleinhuepf April 2020
class	ResultsTableToImage2D	Deprecated.
class	Rotate2D	Author: @haesleinhuepf 12 2018
class	Rotate3D	Author: @haesleinhuepf 12 2018
class	RotateClockwise	Author: @haesleinhuepf 12 2018
class	RotateCounterClockwise	Author: @haesleinhuepf 12 2018
class	RotateLeft	Deprecated.
class	RotateRight	Deprecated.
class	SaveAsTIF
class	Scale	Deprecated.
class	Scale2D	Author: @haesleinhuepf 12 2018
class	Scale3D	Author: @haesleinhuepf 12 2018
class	Set	Author: @haesleinhuepf December 2018
class	SetColumn	Author: @haesleinhuepf December 2018
class	SetImageBorders	Author: @haesleinhuepf March 2020
class	SetNonZeroPixelsToPixelIndex	Author: @haesleinhuepf 12 2018
class	SetPlane	Author: @haesleinhuepf December 2018
class	SetRampX	Author: @haesleinhuepf February 2020
class	SetRampY	Author: @haesleinhuepf February 2020
class	SetRampZ	Author: @haesleinhuepf February 2020
class	SetRandom	Author: @haesleinhuepf March 2020
class	SetRow	Author: @haesleinhuepf December 2018
class	SetWhereXequalsY	Author: @haesleinhuepf December 2018
class	SetWhereXgreaterThanY	Author: @haesleinhuepf December 2018
class	SetWhereXsmallerThanY	Author: @haesleinhuepf December 2018
class	ShortestDistances
class	Smaller	Author: @haesleinhuepf August 2019
class	SmallerConstant	Author: @haesleinhuepf August 2019
class	SmallerOrEqual	Author: @haesleinhuepf August 2019
class	SmallerOrEqualConstant	Author: @haesleinhuepf August 2019
class	Sobel	Author: @ruthhwj, @haesleinhuepf November 2019
class	SorensenDiceCoefficient	Author: @haesleinhuepf July 2019
class	SpotsToPointList
class	SquaredDifference	Author: @haesleinhuepf June 2020
class	StandardDeviationOfAllPixels	Author: @haesleinhuepf September 2019
class	StandardDeviationOfMaskedPixels	Author: @haesleinhuepf September 2019
class	StandardDeviationOfTouchingNeighbors
class	StandardDeviationZProjection	Author: @haesleinhuepf June 2019
class	StartTimeTracing	Author: @haesleinhuepf April 2020
class	StatisticsOfBackgroundAndLabelledPixels	Author: @haesleinhuepf April 2020
class	StatisticsOfImage	Author: @haesleinhuepf April 2020
class	StatisticsOfLabelledPixels	Author: @haesleinhuepf September 2019 in Prague
class	StopTimeTracing	Author: @haesleinhuepf April 2020
class	SubtractImageFromScalar	Author: @haesleinhuepf 12 2018
class	SubtractImages	Author: @haesleinhuepf 12 2018
class	SumImageSliceBySlice	Author: @haesleinhuepf December 2018
class	SumOfAllPixels	Author: @haesleinhuepf December 2018
class	SumXProjection	Author: @haesleinhuepf December 2018
class	SumYProjection	Author: @haesleinhuepf December 2018
class	SumZProjection	Author: @haesleinhuepf December 2018
class	Threshold	Author: @haesleinhuepf December 2018
class	ThresholdDefault	ThresholdDefault
class	ThresholdHuang	ThresholdHuang
class	ThresholdIJ_IsoData	ThresholdIJ_IsoData
class	ThresholdIntermodes	ThresholdIntermodes
class	ThresholdIsoData	ThresholdIsoData
class	ThresholdLi	ThresholdLi
class	ThresholdMaxEntropy	ThresholdMaxEntropy
class	ThresholdMean	ThresholdMean
class	ThresholdMinError	ThresholdMinError
class	ThresholdMinimum	ThresholdMinimum
class	ThresholdMoments	ThresholdMoments
class	ThresholdOtsu	ThresholdOtsu
class	ThresholdPercentile	ThresholdPercentile
class	ThresholdRenyiEntropy	ThresholdRenyiEntropy
class	ThresholdShanbhag	ThresholdShanbhag
class	ThresholdTriangle	ThresholdTriangle
class	ThresholdYen	ThresholdYen
class	TopHatBox
class	TopHatSphere
class	TouchMatrixToAdjacencyMatrix	Author: @haesleinhuepf April 2020
class	TouchMatrixToMesh	Author: @haesleinhuepf November 2019
class	Translate2D	Author: @haesleinhuepf 12 2018
class	Translate3D	Author: @haesleinhuepf 12 2018
class	TransposeXY
class	TransposeXZ
class	TransposeYZ
class	UndefinedToZero	Author: @haesleinhuepf June 2020
class	VarianceOfAllPixels	Author: @haesleinhuepf September 2019
class	VarianceOfMaskedPixels	Author: @haesleinhuepf 12 2018
class	VoronoiLabeling	Author: @haesleinhuepf March 2020
class	VoronoiOctagon	Author: @haesleinhuepf March 2020
class	Watershed	Author: @haesleinhuepf December 2018
class	WriteValuesToPositions	Author: @haesleinhuepf June 2019