Package net.haesleinhuepf.clij2.plugins

Class CloseIndexGapsInLabelMap

java.lang.Object

net.haesleinhuepf.clij.macro.AbstractCLIJPlugin

net.haesleinhuepf.clij2.AbstractCLIJ2Plugin

net.haesleinhuepf.clij2.plugins.CloseIndexGapsInLabelMap

All Implemented Interfaces:

PlugInFilter, net.haesleinhuepf.clij.macro.CLIJMacroPlugin, net.haesleinhuepf.clij.macro.CLIJOpenCLProcessor, net.haesleinhuepf.clij.macro.documentation.OffersDocumentation, HasClassifiedInputOutput, net.haesleinhuepf.clij2.utilities.IsCategorized, SciJavaPlugin

public class CloseIndexGapsInLabelMap
extends AbstractCLIJ2Plugin
implements net.haesleinhuepf.clij.macro.CLIJMacroPlugin, net.haesleinhuepf.clij.macro.CLIJOpenCLProcessor, net.haesleinhuepf.clij.macro.documentation.OffersDocumentation, net.haesleinhuepf.clij2.utilities.IsCategorized, HasClassifiedInputOutput

ConnectedComponentsLabeling

Author: @haesleinhuepf 06 2019

Field Summary

Fields inherited from class net.haesleinhuepf.clij.macro.AbstractCLIJPlugin

args, clij, default_values, name

Fields inherited from interface ij.plugin.filter.PlugInFilter

CONVERT_TO_FLOAT, DOES_16, DOES_32, DOES_8C, DOES_8G, DOES_ALL, DOES_RGB, DOES_STACKS, DONE, FINAL_PROCESSING, KEEP_THRESHOLD, NO_CHANGES, NO_IMAGE_REQUIRED, NO_UNDO, NO_UNDO_RESET, PARALLELIZE_IMAGES, PARALLELIZE_STACKS, ROI_REQUIRED, SNAPSHOT, STACK_REQUIRED, SUPPORTS_MASKING

Constructor Summary

Constructors

Constructor	Description
CloseIndexGapsInLabelMap()

Method Summary

Modifier and Type	Method	Description
static boolean	closeIndexGapsInLabelMap(CLIJ2 clij2, net.haesleinhuepf.clij.clearcl.ClearCLBuffer input, net.haesleinhuepf.clij.clearcl.interfaces.ClearCLImageInterface output)
net.haesleinhuepf.clij.clearcl.ClearCLBuffer	createOutputBufferFromSource(net.haesleinhuepf.clij.clearcl.ClearCLBuffer input)
boolean	executeCL()
String	getAvailableForDimensions()
String	getCategories()
String	getDescription()
String	getInputType()
String	getOutputType()
String	getParameterHelpText()
static boolean	shiftIntensitiesToCloseGaps(CLIJ2 clij2, net.haesleinhuepf.clij.clearcl.ClearCLBuffer input, net.haesleinhuepf.clij.clearcl.ClearCLBuffer output)	Deprecated.

Methods inherited from class net.haesleinhuepf.clij2.AbstractCLIJ2Plugin

getCLIJ2, setClij, setCLIJ2

Methods inherited from class net.haesleinhuepf.clij.macro.AbstractCLIJPlugin

asBoolean, asFloat, asInteger, containsCLBufferArguments, containsCLImageArguments, getDefaultValues, getImageVariableName, getName, imageJ2Args, imageJArgs, openCLBufferArgs, openCLImageArgs, releaseBuffers, releaseImages, run, setArgs, setup

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.haesleinhuepf.clij.macro.CLIJMacroPlugin

getName, setArgs, setClij

Methods inherited from interface net.haesleinhuepf.clij2.utilities.IsCategorized

isInCategory

Constructor Detail

CloseIndexGapsInLabelMap

public CloseIndexGapsInLabelMap()

Method Detail

getInputType

public String getInputType()

Specified by:

getInputType in interface HasClassifiedInputOutput

getOutputType

public String getOutputType()

Specified by:

getOutputType in interface HasClassifiedInputOutput

executeCL

public boolean executeCL()

Specified by:

executeCL in interface net.haesleinhuepf.clij.macro.CLIJOpenCLProcessor

shiftIntensitiesToCloseGaps

@Deprecated
public static boolean shiftIntensitiesToCloseGaps(CLIJ2 clij2,
                                                  net.haesleinhuepf.clij.clearcl.ClearCLBuffer input,
                                                  net.haesleinhuepf.clij.clearcl.ClearCLBuffer output)

Deprecated.

closeIndexGapsInLabelMap

public static boolean closeIndexGapsInLabelMap(CLIJ2 clij2,
                                               net.haesleinhuepf.clij.clearcl.ClearCLBuffer input,
                                               net.haesleinhuepf.clij.clearcl.interfaces.ClearCLImageInterface output)

getParameterHelpText

public String getParameterHelpText()

Specified by:

getParameterHelpText in interface net.haesleinhuepf.clij.macro.CLIJMacroPlugin

getDescription

public String getDescription()

Specified by:

getDescription in interface net.haesleinhuepf.clij.macro.documentation.OffersDocumentation

getAvailableForDimensions

public String getAvailableForDimensions()

Specified by:

getAvailableForDimensions in interface net.haesleinhuepf.clij.macro.documentation.OffersDocumentation

createOutputBufferFromSource

public net.haesleinhuepf.clij.clearcl.ClearCLBuffer createOutputBufferFromSource(net.haesleinhuepf.clij.clearcl.ClearCLBuffer input)

Specified by:

createOutputBufferFromSource in interface net.haesleinhuepf.clij.macro.CLIJMacroPlugin

Overrides:

createOutputBufferFromSource in class net.haesleinhuepf.clij.macro.AbstractCLIJPlugin

getCategories

public String getCategories()

Specified by:

getCategories in interface net.haesleinhuepf.clij2.utilities.IsCategorized