Package net.haesleinhuepf.clij2.plugins

Class GetAutomaticThreshold

java.lang.Object

net.haesleinhuepf.clij.macro.AbstractCLIJPlugin

net.haesleinhuepf.clij2.AbstractCLIJ2Plugin

net.haesleinhuepf.clij2.plugins.GetAutomaticThreshold

All Implemented Interfaces:

PlugInFilter, net.haesleinhuepf.clij.macro.CLIJMacroPlugin, net.haesleinhuepf.clij.macro.CLIJOpenCLProcessor, net.haesleinhuepf.clij.macro.documentation.OffersDocumentation, net.haesleinhuepf.clij2.utilities.HasAuthor, net.haesleinhuepf.clij2.utilities.HasLicense, net.haesleinhuepf.clij2.utilities.IsCategorized, SciJavaPlugin

public class GetAutomaticThreshold
extends AbstractCLIJ2Plugin
implements net.haesleinhuepf.clij.macro.CLIJMacroPlugin, net.haesleinhuepf.clij.macro.CLIJOpenCLProcessor, net.haesleinhuepf.clij.macro.documentation.OffersDocumentation, net.haesleinhuepf.clij2.utilities.HasAuthor, net.haesleinhuepf.clij2.utilities.HasLicense, net.haesleinhuepf.clij2.utilities.IsCategorized

AutomaticThreshold

Author: @haesleinhuepf January 2019

Field Summary

Fields inherited from class net.haesleinhuepf.clij.macro.AbstractCLIJPlugin

args, clij, default_values, name

Fields inherited from interface ij.plugin.filter.PlugInFilter

CONVERT_TO_FLOAT, DOES_16, DOES_32, DOES_8C, DOES_8G, DOES_ALL, DOES_RGB, DOES_STACKS, DONE, FINAL_PROCESSING, KEEP_THRESHOLD, NO_CHANGES, NO_IMAGE_REQUIRED, NO_UNDO, NO_UNDO_RESET, PARALLELIZE_IMAGES, PARALLELIZE_STACKS, ROI_REQUIRED, SNAPSHOT, STACK_REQUIRED, SUPPORTS_MASKING

Constructor Summary

Constructors

Constructor	Description
GetAutomaticThreshold()

Method Summary

Modifier and Type	Method	Description
boolean	executeCL()
String	getAuthorName()
static double	getAutomaticThreshold(CLIJ2 clij2, net.haesleinhuepf.clij.clearcl.ClearCLBuffer src, String userSelectedMethod)
static double	getAutomaticThreshold(CLIJ2 clij2, net.haesleinhuepf.clij.clearcl.ClearCLBuffer src, String userSelectedMethod, Float minimumGreyValue, Float maximumGreyValue, Integer numberOfBins)
String	getAvailableForDimensions()
String	getCategories()
String	getDescription()
String	getLicense()
String	getParameterHelpText()

Methods inherited from class net.haesleinhuepf.clij2.AbstractCLIJ2Plugin

getCLIJ2, setClij, setCLIJ2

Methods inherited from class net.haesleinhuepf.clij.macro.AbstractCLIJPlugin

asBoolean, asFloat, asInteger, containsCLBufferArguments, containsCLImageArguments, createOutputBufferFromSource, getDefaultValues, getImageVariableName, getName, imageJ2Args, imageJArgs, openCLBufferArgs, openCLImageArgs, releaseBuffers, releaseImages, run, setArgs, setup

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.haesleinhuepf.clij.macro.CLIJMacroPlugin

createOutputBufferFromSource, getName, setArgs, setClij

Methods inherited from interface net.haesleinhuepf.clij2.utilities.IsCategorized

isInCategory

Constructor Detail

GetAutomaticThreshold

public GetAutomaticThreshold()

Method Detail

executeCL

public boolean executeCL()

Specified by:

executeCL in interface net.haesleinhuepf.clij.macro.CLIJOpenCLProcessor

getAutomaticThreshold

public static double getAutomaticThreshold(CLIJ2 clij2,
                                           net.haesleinhuepf.clij.clearcl.ClearCLBuffer src,
                                           String userSelectedMethod)

getAutomaticThreshold

public static double getAutomaticThreshold(CLIJ2 clij2,
                                           net.haesleinhuepf.clij.clearcl.ClearCLBuffer src,
                                           String userSelectedMethod,
                                           Float minimumGreyValue,
                                           Float maximumGreyValue,
                                           Integer numberOfBins)

getDescription

public String getDescription()

Specified by:

getDescription in interface net.haesleinhuepf.clij.macro.documentation.OffersDocumentation

getParameterHelpText

public String getParameterHelpText()

Specified by:

getParameterHelpText in interface net.haesleinhuepf.clij.macro.CLIJMacroPlugin

getAvailableForDimensions

public String getAvailableForDimensions()

Specified by:

getAvailableForDimensions in interface net.haesleinhuepf.clij.macro.documentation.OffersDocumentation

getAuthorName

public String getAuthorName()

Specified by:

getAuthorName in interface net.haesleinhuepf.clij2.utilities.HasAuthor

getLicense

public String getLicense()

Specified by:

getLicense in interface net.haesleinhuepf.clij2.utilities.HasLicense

getCategories

public String getCategories()

Specified by:

getCategories in interface net.haesleinhuepf.clij2.utilities.IsCategorized