Package net.haesleinhuepf.clij2.plugins

Class Histogram

java.lang.Object

net.haesleinhuepf.clij.macro.AbstractCLIJPlugin

net.haesleinhuepf.clij2.AbstractCLIJ2Plugin

net.haesleinhuepf.clij2.plugins.Histogram

All Implemented Interfaces:

PlugInFilter, net.haesleinhuepf.clij.macro.CLIJMacroPlugin, net.haesleinhuepf.clij.macro.CLIJOpenCLProcessor, net.haesleinhuepf.clij.macro.documentation.OffersDocumentation, net.haesleinhuepf.clij2.utilities.HasAuthor, HasClassifiedInputOutput, net.haesleinhuepf.clij2.utilities.HasLicense, net.haesleinhuepf.clij2.utilities.IsCategorized, SciJavaPlugin

public class Histogram
extends AbstractCLIJ2Plugin
implements net.haesleinhuepf.clij.macro.CLIJMacroPlugin, net.haesleinhuepf.clij.macro.CLIJOpenCLProcessor, net.haesleinhuepf.clij.macro.documentation.OffersDocumentation, net.haesleinhuepf.clij2.utilities.HasLicense, net.haesleinhuepf.clij2.utilities.HasAuthor, net.haesleinhuepf.clij2.utilities.IsCategorized, HasClassifiedInputOutput

Author: @haesleinhuepf December 2019

Field Summary

Fields inherited from class net.haesleinhuepf.clij.macro.AbstractCLIJPlugin

args, clij, default_values, name

Fields inherited from interface ij.plugin.filter.PlugInFilter

CONVERT_TO_FLOAT, DOES_16, DOES_32, DOES_8C, DOES_8G, DOES_ALL, DOES_RGB, DOES_STACKS, DONE, FINAL_PROCESSING, KEEP_THRESHOLD, NO_CHANGES, NO_IMAGE_REQUIRED, NO_UNDO, NO_UNDO_RESET, PARALLELIZE_IMAGES, PARALLELIZE_STACKS, ROI_REQUIRED, SNAPSHOT, STACK_REQUIRED, SUPPORTS_MASKING

Constructor Summary

Constructors

Constructor	Description
Histogram()

Method Summary

Modifier and Type	Method	Description
net.haesleinhuepf.clij.clearcl.ClearCLBuffer	createOutputBufferFromSource(net.haesleinhuepf.clij.clearcl.ClearCLBuffer input)
boolean	executeCL()
static boolean	fillHistogram(CLIJ2 clij2, net.haesleinhuepf.clij.clearcl.ClearCLBuffer src, net.haesleinhuepf.clij.clearcl.ClearCLBuffer dstHistogram, Float minimumGreyValue, Float maximumGreyValue)	Deprecated.
String	getAuthorName()
String	getAvailableForDimensions()
String	getCategories()
String	getDescription()
String	getInputType()
String	getLicense()
String	getOutputType()
String	getParameterHelpText()
static net.haesleinhuepf.clij.clearcl.ClearCLBuffer	histogram(CLIJ2 clij2, net.haesleinhuepf.clij.clearcl.ClearCLBuffer src)
static float[]	histogram(CLIJ2 clij2, net.haesleinhuepf.clij.clearcl.ClearCLBuffer image, Float minGreyValue, Float maxGreyValue, Integer numberOfBins)
static boolean	histogram(CLIJ2 clij2, net.haesleinhuepf.clij.clearcl.ClearCLBuffer src, net.haesleinhuepf.clij.clearcl.ClearCLBuffer histogram)
static boolean	histogram(CLIJ2 clij2, net.haesleinhuepf.clij.clearcl.ClearCLBuffer src, net.haesleinhuepf.clij.clearcl.ClearCLBuffer histogram, Integer numberOfBins, Float minimumGreyValue, Float maximumGreyValue, Boolean determineMinMax)
static boolean	histogram(CLIJ2 clij2, net.haesleinhuepf.clij.clearcl.ClearCLBuffer src, net.haesleinhuepf.clij.clearcl.ClearCLBuffer histogram, Integer numberOfBins, Float minimumGreyValue, Float maximumGreyValue, Boolean determineMinMax, boolean showTable)

Methods inherited from class net.haesleinhuepf.clij2.AbstractCLIJ2Plugin

getCLIJ2, setClij, setCLIJ2

Methods inherited from class net.haesleinhuepf.clij.macro.AbstractCLIJPlugin

asBoolean, asFloat, asInteger, containsCLBufferArguments, containsCLImageArguments, getDefaultValues, getImageVariableName, getName, imageJ2Args, imageJArgs, openCLBufferArgs, openCLImageArgs, releaseBuffers, releaseImages, run, setArgs, setup

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.haesleinhuepf.clij.macro.CLIJMacroPlugin

getName, setArgs, setClij

Methods inherited from interface net.haesleinhuepf.clij2.utilities.IsCategorized

isInCategory

Constructor Detail

Histogram

public Histogram()

Method Detail

getInputType

public String getInputType()

Specified by:

getInputType in interface HasClassifiedInputOutput

getOutputType

public String getOutputType()

Specified by:

getOutputType in interface HasClassifiedInputOutput

getCategories

public String getCategories()

Specified by:

getCategories in interface net.haesleinhuepf.clij2.utilities.IsCategorized

executeCL

public boolean executeCL()

Specified by:

executeCL in interface net.haesleinhuepf.clij.macro.CLIJOpenCLProcessor

histogram

public static float[] histogram(CLIJ2 clij2,
                                net.haesleinhuepf.clij.clearcl.ClearCLBuffer image,
                                Float minGreyValue,
                                Float maxGreyValue,
                                Integer numberOfBins)

histogram

public static boolean histogram(CLIJ2 clij2,
                                net.haesleinhuepf.clij.clearcl.ClearCLBuffer src,
                                net.haesleinhuepf.clij.clearcl.ClearCLBuffer histogram)

histogram

public static net.haesleinhuepf.clij.clearcl.ClearCLBuffer histogram(CLIJ2 clij2,
                                                                     net.haesleinhuepf.clij.clearcl.ClearCLBuffer src)

histogram

public static boolean histogram(CLIJ2 clij2,
                                net.haesleinhuepf.clij.clearcl.ClearCLBuffer src,
                                net.haesleinhuepf.clij.clearcl.ClearCLBuffer histogram,
                                Integer numberOfBins,
                                Float minimumGreyValue,
                                Float maximumGreyValue,
                                Boolean determineMinMax)

histogram

public static boolean histogram(CLIJ2 clij2,
                                net.haesleinhuepf.clij.clearcl.ClearCLBuffer src,
                                net.haesleinhuepf.clij.clearcl.ClearCLBuffer histogram,
                                Integer numberOfBins,
                                Float minimumGreyValue,
                                Float maximumGreyValue,
                                Boolean determineMinMax,
                                boolean showTable)

fillHistogram

@Deprecated
public static boolean fillHistogram(CLIJ2 clij2,
                                    net.haesleinhuepf.clij.clearcl.ClearCLBuffer src,
                                    net.haesleinhuepf.clij.clearcl.ClearCLBuffer dstHistogram,
                                    Float minimumGreyValue,
                                    Float maximumGreyValue)

Deprecated.

use histogram instead

getParameterHelpText

public String getParameterHelpText()

Specified by:

getParameterHelpText in interface net.haesleinhuepf.clij.macro.CLIJMacroPlugin

getDescription

public String getDescription()

Specified by:

getDescription in interface net.haesleinhuepf.clij.macro.documentation.OffersDocumentation

getAvailableForDimensions

public String getAvailableForDimensions()

Specified by:

getAvailableForDimensions in interface net.haesleinhuepf.clij.macro.documentation.OffersDocumentation

createOutputBufferFromSource

public net.haesleinhuepf.clij.clearcl.ClearCLBuffer createOutputBufferFromSource(net.haesleinhuepf.clij.clearcl.ClearCLBuffer input)

Specified by:

createOutputBufferFromSource in interface net.haesleinhuepf.clij.macro.CLIJMacroPlugin

Overrides:

createOutputBufferFromSource in class net.haesleinhuepf.clij.macro.AbstractCLIJPlugin

getAuthorName

public String getAuthorName()

Specified by:

getAuthorName in interface net.haesleinhuepf.clij2.utilities.HasAuthor

getLicense

public String getLicense()

Specified by:

getLicense in interface net.haesleinhuepf.clij2.utilities.HasLicense