Package net.haesleinhuepf.clij2.plugins

Class MeanClosestSpotDistance

java.lang.Object

net.haesleinhuepf.clij.macro.AbstractCLIJPlugin

net.haesleinhuepf.clij2.AbstractCLIJ2Plugin

net.haesleinhuepf.clij2.plugins.MeanClosestSpotDistance

All Implemented Interfaces:

PlugInFilter, net.haesleinhuepf.clij.macro.CLIJMacroPlugin, net.haesleinhuepf.clij.macro.CLIJOpenCLProcessor, net.haesleinhuepf.clij.macro.documentation.OffersDocumentation, net.haesleinhuepf.clij2.utilities.IsCategorized, SciJavaPlugin

public class MeanClosestSpotDistance
extends AbstractCLIJ2Plugin
implements net.haesleinhuepf.clij.macro.CLIJMacroPlugin, net.haesleinhuepf.clij.macro.CLIJOpenCLProcessor, net.haesleinhuepf.clij.macro.documentation.OffersDocumentation, net.haesleinhuepf.clij2.utilities.IsCategorized

Author: @haesleinhuepf July 2019

Field Summary

Fields inherited from class net.haesleinhuepf.clij.macro.AbstractCLIJPlugin

args, clij, default_values, name

Fields inherited from interface ij.plugin.filter.PlugInFilter

CONVERT_TO_FLOAT, DOES_16, DOES_32, DOES_8C, DOES_8G, DOES_ALL, DOES_RGB, DOES_STACKS, DONE, FINAL_PROCESSING, KEEP_THRESHOLD, NO_CHANGES, NO_IMAGE_REQUIRED, NO_UNDO, NO_UNDO_RESET, PARALLELIZE_IMAGES, PARALLELIZE_STACKS, ROI_REQUIRED, SNAPSHOT, STACK_REQUIRED, SUPPORTS_MASKING

Constructor Summary

Constructors

Constructor	Description
MeanClosestSpotDistance()

Method Summary

Modifier and Type	Method	Description
boolean	executeCL()
String	getAvailableForDimensions()
String	getCategories()
String	getDescription()
String	getParameterHelpText()
static double	meanClosestSpotDistance(CLIJ2 clij2, net.haesleinhuepf.clij.clearcl.ClearCLBuffer spotsA, net.haesleinhuepf.clij.clearcl.ClearCLBuffer spotsB)
static double[]	meanClosestSpotDistance(CLIJ2 clij2, net.haesleinhuepf.clij.clearcl.ClearCLBuffer spotsA, net.haesleinhuepf.clij.clearcl.ClearCLBuffer spotsB, Boolean bidirectional)

Methods inherited from class net.haesleinhuepf.clij2.AbstractCLIJ2Plugin

getCLIJ2, setClij, setCLIJ2

Methods inherited from class net.haesleinhuepf.clij.macro.AbstractCLIJPlugin

asBoolean, asFloat, asInteger, containsCLBufferArguments, containsCLImageArguments, createOutputBufferFromSource, getDefaultValues, getImageVariableName, getName, imageJ2Args, imageJArgs, openCLBufferArgs, openCLImageArgs, releaseBuffers, releaseImages, run, setArgs, setup

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.haesleinhuepf.clij.macro.CLIJMacroPlugin

createOutputBufferFromSource, getName, setArgs, setClij

Methods inherited from interface net.haesleinhuepf.clij2.utilities.IsCategorized

isInCategory

Constructor Detail

MeanClosestSpotDistance

public MeanClosestSpotDistance()

Method Detail

getCategories

public String getCategories()

Specified by:

getCategories in interface net.haesleinhuepf.clij2.utilities.IsCategorized

executeCL

public boolean executeCL()

Specified by:

executeCL in interface net.haesleinhuepf.clij.macro.CLIJOpenCLProcessor

meanClosestSpotDistance

public static double meanClosestSpotDistance(CLIJ2 clij2,
                                             net.haesleinhuepf.clij.clearcl.ClearCLBuffer spotsA,
                                             net.haesleinhuepf.clij.clearcl.ClearCLBuffer spotsB)

meanClosestSpotDistance

public static double[] meanClosestSpotDistance(CLIJ2 clij2,
                                               net.haesleinhuepf.clij.clearcl.ClearCLBuffer spotsA,
                                               net.haesleinhuepf.clij.clearcl.ClearCLBuffer spotsB,
                                               Boolean bidirectional)

getParameterHelpText

public String getParameterHelpText()

Specified by:

getParameterHelpText in interface net.haesleinhuepf.clij.macro.CLIJMacroPlugin

getDescription

public String getDescription()

Specified by:

getDescription in interface net.haesleinhuepf.clij.macro.documentation.OffersDocumentation

getAvailableForDimensions

public String getAvailableForDimensions()

Specified by:

getAvailableForDimensions in interface net.haesleinhuepf.clij.macro.documentation.OffersDocumentation