Package net.haesleinhuepf.clij2.plugins

Class StatisticsOfLabelledPixels

java.lang.Object

net.haesleinhuepf.clij.macro.AbstractCLIJPlugin

net.haesleinhuepf.clij2.AbstractCLIJ2Plugin

net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels

All Implemented Interfaces:

PlugInFilter, net.haesleinhuepf.clij.macro.CLIJMacroPlugin, net.haesleinhuepf.clij.macro.CLIJOpenCLProcessor, net.haesleinhuepf.clij.macro.documentation.OffersDocumentation, net.haesleinhuepf.clij2.utilities.IsCategorized, SciJavaPlugin

public class StatisticsOfLabelledPixels
extends AbstractCLIJ2Plugin
implements net.haesleinhuepf.clij.macro.CLIJMacroPlugin, net.haesleinhuepf.clij.macro.CLIJOpenCLProcessor, net.haesleinhuepf.clij.macro.documentation.OffersDocumentation, net.haesleinhuepf.clij2.utilities.IsCategorized

Author: @haesleinhuepf September 2019 in Prague

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	StatisticsOfLabelledPixels.STATISTICS_ENTRY

Field Summary

Fields inherited from class net.haesleinhuepf.clij.macro.AbstractCLIJPlugin

args, clij, default_values, name

Fields inherited from interface ij.plugin.filter.PlugInFilter

CONVERT_TO_FLOAT, DOES_16, DOES_32, DOES_8C, DOES_8G, DOES_ALL, DOES_RGB, DOES_STACKS, DONE, FINAL_PROCESSING, KEEP_THRESHOLD, NO_CHANGES, NO_IMAGE_REQUIRED, NO_UNDO, NO_UNDO_RESET, PARALLELIZE_IMAGES, PARALLELIZE_STACKS, ROI_REQUIRED, SNAPSHOT, STACK_REQUIRED, SUPPORTS_MASKING

Constructor Summary

Constructors

Constructor	Description
StatisticsOfLabelledPixels()

Method Summary

Modifier and Type	Method	Description
boolean	executeCL()
String	getAvailableForDimensions()
String	getCategories()
String	getDescription()
String	getParameterHelpText()
static double[][]	statisticsOfLabelledPixels(CLIJ2 clij2, net.haesleinhuepf.clij.clearcl.ClearCLBuffer inputImage, net.haesleinhuepf.clij.clearcl.ClearCLBuffer inputLabelMap)
static ResultsTable	statisticsOfLabelledPixels(CLIJ2 clij2, net.haesleinhuepf.clij.clearcl.ClearCLBuffer inputImage, net.haesleinhuepf.clij.clearcl.ClearCLBuffer inputLabelMap, ResultsTable resultsTable)
static double[]	statisticsOfLabelledPixels(CLIJ2 clij2, net.haesleinhuepf.clij.clearcl.ClearCLBuffer inputImage, net.haesleinhuepf.clij.clearcl.ClearCLBuffer inputLabelMap, Integer labelIndex)
static double[][]	statisticsOfLabelledPixels(CLIJ2 clij2, net.haesleinhuepf.clij.clearcl.ClearCLBuffer inputImage, net.haesleinhuepf.clij.clearcl.ClearCLBuffer inputLabelMap, Integer startLabelIndex, Integer endLabelIndex)
static double[][]	statisticsOfLabelledPixels_single_threaded(CLIJ2 clij2, net.haesleinhuepf.clij.clearcl.ClearCLBuffer inputImage, net.haesleinhuepf.clij.clearcl.ClearCLBuffer inputLabelMap, Integer startLabelIndex, Integer endLabelIndex)

Methods inherited from class net.haesleinhuepf.clij2.AbstractCLIJ2Plugin

getCLIJ2, setClij, setCLIJ2

Methods inherited from class net.haesleinhuepf.clij.macro.AbstractCLIJPlugin

asBoolean, asFloat, asInteger, containsCLBufferArguments, containsCLImageArguments, createOutputBufferFromSource, getDefaultValues, getImageVariableName, getName, imageJ2Args, imageJArgs, openCLBufferArgs, openCLImageArgs, releaseBuffers, releaseImages, run, setArgs, setup

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.haesleinhuepf.clij.macro.CLIJMacroPlugin

createOutputBufferFromSource, getName, setArgs, setClij

Methods inherited from interface net.haesleinhuepf.clij2.utilities.IsCategorized

isInCategory

Constructor Detail

StatisticsOfLabelledPixels

public StatisticsOfLabelledPixels()

Method Detail

getCategories

public String getCategories()

Specified by:

getCategories in interface net.haesleinhuepf.clij2.utilities.IsCategorized

executeCL

public boolean executeCL()

Specified by:

executeCL in interface net.haesleinhuepf.clij.macro.CLIJOpenCLProcessor

statisticsOfLabelledPixels

public static ResultsTable statisticsOfLabelledPixels(CLIJ2 clij2,
                                                      net.haesleinhuepf.clij.clearcl.ClearCLBuffer inputImage,
                                                      net.haesleinhuepf.clij.clearcl.ClearCLBuffer inputLabelMap,
                                                      ResultsTable resultsTable)

statisticsOfLabelledPixels

public static double[][] statisticsOfLabelledPixels(CLIJ2 clij2,
                                                    net.haesleinhuepf.clij.clearcl.ClearCLBuffer inputImage,
                                                    net.haesleinhuepf.clij.clearcl.ClearCLBuffer inputLabelMap)

statisticsOfLabelledPixels

public static double[] statisticsOfLabelledPixels(CLIJ2 clij2,
                                                  net.haesleinhuepf.clij.clearcl.ClearCLBuffer inputImage,
                                                  net.haesleinhuepf.clij.clearcl.ClearCLBuffer inputLabelMap,
                                                  Integer labelIndex)

statisticsOfLabelledPixels

public static double[][] statisticsOfLabelledPixels(CLIJ2 clij2,
                                                    net.haesleinhuepf.clij.clearcl.ClearCLBuffer inputImage,
                                                    net.haesleinhuepf.clij.clearcl.ClearCLBuffer inputLabelMap,
                                                    Integer startLabelIndex,
                                                    Integer endLabelIndex)

statisticsOfLabelledPixels_single_threaded

public static double[][] statisticsOfLabelledPixels_single_threaded(CLIJ2 clij2,
                                                                    net.haesleinhuepf.clij.clearcl.ClearCLBuffer inputImage,
                                                                    net.haesleinhuepf.clij.clearcl.ClearCLBuffer inputLabelMap,
                                                                    Integer startLabelIndex,
                                                                    Integer endLabelIndex)

getParameterHelpText

public String getParameterHelpText()

Specified by:

getParameterHelpText in interface net.haesleinhuepf.clij.macro.CLIJMacroPlugin

getDescription

public String getDescription()

Specified by:

getDescription in interface net.haesleinhuepf.clij.macro.documentation.OffersDocumentation

getAvailableForDimensions

public String getAvailableForDimensions()

Specified by:

getAvailableForDimensions in interface net.haesleinhuepf.clij.macro.documentation.OffersDocumentation