| Absolute |
Author: @haesleinhuepf
November 2019
|
| AbsoluteDifference |
Author: @haesleinhuepf
June 2020
|
| AddImageAndScalar |
Author: @haesleinhuepf
December 2018
|
| AddImages |
Author: @haesleinhuepf
12 2018
|
| AddImagesWeighted |
Author: @haesleinhuepf
December 2018
|
| AdjacencyMatrixToTouchMatrix |
Author: @haesleinhuepf
April 2020
|
| AffineTransform |
Deprecated. |
| AffineTransform2D |
Author: @haesleinhuepf
December 2019
|
| AffineTransform3D |
Author: @haesleinhuepf
December 2019
|
| ApplyVectorField2D |
Author: @haesleinhuepf
12 2018
|
| ApplyVectorField3D |
Author: @haesleinhuepf
12 2018
|
| ArgMaximumZProjection |
Author: @haesleinhuepf
December 2018
|
| AutomaticThreshold |
AutomaticThreshold
|
| AutoThresholderImageJ1 |
Copied from
https://github.com/imagej/imagej1/blob/master/ij/process/AutoThresholder.java
To reduce dependencies towards ImageJ1
|
| AverageDistanceOfNClosestPoints |
|
| AverageDistanceOfNFarOffPoints |
|
| AverageDistanceOfTouchingNeighbors |
|
| BinaryAnd |
Author: @haesleinhuepf
12 2018
|
| BinaryEdgeDetection |
Author: @haesleinhuepf
September 2019
|
| BinaryFillHoles |
Author: @haesleinhuepf
March 2020
|
| BinaryIntersection |
|
| BinaryNot |
Author: @haesleinhuepf
12 2018
|
| BinaryOr |
Author: @haesleinhuepf
12 2018
|
| BinarySubtract |
Author: @haesleinhuepf
September 2019
|
| BinaryUnion |
|
| BinaryXOr |
Author: @haesleinhuepf
12 2018
|
| Blur2D |
Deprecated. |
| Blur3D |
Deprecated. |
| Blur3DSliceBySlice |
Deprecated. |
| BottomHatBox |
|
| BottomHatSphere |
|
| BoundingBox |
Author: @haesleinhuepf
December 2018
|
| CenterOfMass |
Author: @haesleinhuepf
December 2018
|
| CentroidsOfBackgroundAndLabels |
Author: @haesleinhuepf
July 2020
|
| CentroidsOfLabels |
Author: @haesleinhuepf
December 2018
|
| Clear |
Author: @haesleinhuepf
12 2018
|
| ClInfo |
Author: @haesleinhuepf
12 2018
|
| CloseIndexGapsInLabelMap |
ConnectedComponentsLabeling
|
| ClosingBox |
|
| ClosingDiamond |
|
| CombineHorizontally |
Author: @haesleinhuepf
May 2020
|
| CombineVertically |
Author: @haesleinhuepf
May 2020
|
| ConcatenateStacks |
Author: @haesleinhuepf
March 2020
|
| ConnectedComponentsLabeling |
Deprecated. |
| ConnectedComponentsLabelingBox |
ConnectedComponentsLabeling
|
| ConnectedComponentsLabelingDiamond |
ConnectedComponentsLabeling
|
| ConvertFloat |
Author: @haesleinhuepf
12 2018
|
| ConvertUInt16 |
Author: @haesleinhuepf
12 2018
|
| ConvertUInt8 |
Author: @haesleinhuepf
12 2018
|
| Convolve |
Author: @haesleinhuepf
December 2018
|
| Copy |
Author: @haesleinhuepf
12 2018
|
| CopySlice |
Author: @haesleinhuepf
December 2018
|
| CountNonZeroPixels |
Author: @haesleinhuepf
June 2019
|
| CountNonZeroPixels2DSphere |
Author: @haesleinhuepf
December 2018
|
| CountNonZeroPixelsSliceBySliceSphere |
Author: @haesleinhuepf
December 2018
|
| CountNonZeroVoxels3DSphere |
Author: @haesleinhuepf
December 2018
|
| CountTouchingNeighbors |
Author: @haesleinhuepf
October 2019
|
| Create2D |
Release
|
| Create3D |
Release
|
| Crop2D |
Author: @haesleinhuepf
December 2018
|
| Crop3D |
Author: @haesleinhuepf
December 2018
|
| CustomOperation |
Author: @haesleinhuepf
|
| DepthColorProjection |
Author: @haesleinhuepf
April 2020
|
| DetectLabelEdges |
Author: @haesleinhuepf
October 2019
|
| DetectMaxima2DBox |
Author: @haesleinhuepf
May 2020
|
| DetectMaxima3DBox |
Author: @haesleinhuepf
May 2020
|
| DetectMaximaBox |
Deprecated. |
| DetectMaximaSliceBySliceBox |
Author: @haesleinhuepf
December 2018
|
| DetectMinima2DBox |
Author: @haesleinhuepf
May 2020
|
| DetectMinima3DBox |
Author: @haesleinhuepf
May 2020
|
| DetectMinimaBox |
Deprecated. |
| DetectMinimaSliceBySliceBox |
Author: @haesleinhuepf
December 2018
|
| DifferenceOfGaussian2D |
|
| DifferenceOfGaussian3D |
|
| DilateBox |
Author: @haesleinhuepf
12 2018
|
| DilateBoxSliceBySlice |
Author: @haesleinhuepf
12 2018
|
| DilateSphere |
Author: @haesleinhuepf
12 2018
|
| DilateSphereSliceBySlice |
Author: @haesleinhuepf
12 2018
|
| DistanceMap |
Author: @haesleinhuepf
September 2019
|
| DistanceMatrixToMesh |
Author: @haesleinhuepf
December 2019
|
| DivideImages |
Author: @haesleinhuepf
12 2018
|
| Downsample2D |
Author: @haesleinhuepf
12 2018
|
| Downsample3D |
Author: @haesleinhuepf
12 2018
|
| DownsampleSliceBySliceHalfMedian |
Author: @haesleinhuepf
12 2018
|
| DrawBox |
DrawLine
|
| DrawLine |
DrawLine
|
| DrawSphere |
DrawLine
|
| EntropyBox |
|
| Equal |
Author: @haesleinhuepf
August 2019
|
| EqualConstant |
Author: @haesleinhuepf
August 2019
|
| EqualizeMeanIntensitiesOfSlices |
|
| ErodeBox |
Author: @haesleinhuepf
12 2018
|
| ErodeBoxSliceBySlice |
Author: @haesleinhuepf
12 2018
|
| ErodeSphere |
Author: @haesleinhuepf
12 2018
|
| ErodeSphereSliceBySlice |
Author: @haesleinhuepf
12 2018
|
| ExcludeLabels |
Author: @haesleinhuepf
April 2020
|
| ExcludeLabelsOnEdges |
Author: @haesleinhuepf
June 2019
|
| ExcludeLabelsOnSurface |
Author: @haesleinhuepf
June 2019
|
| ExcludeLabelsSubSurface |
Author: @haesleinhuepf
June 2019
|
| ExcludeLabelsWithValuesOutOfRange |
Author: @haesleinhuepf
May 2020
|
| ExcludeLabelsWithValuesWithinRange |
Author: @haesleinhuepf
May 2020
|
| Exponential |
Based on
net.haesleinhuepf.clij.macro.modules.Power.java
Author: @haesleinhuepf
December 2018
modified by: @phaub
July 2019
|
| ExtendLabelingViaVoronoi |
Author: @haesleinhuepf
June 2020
|
| Flip2D |
Author: @haesleinhuepf
12 2018
|
| Flip3D |
Author: @haesleinhuepf
12 2018
|
| FloodFillDiamond |
Author: @haesleinhuepf
March 2020
|
| GaussianBlur2D |
Author: @haesleinhuepf
12 2018
|
| GaussianBlur3D |
Author: @haesleinhuepf
12 2018
|
| GenerateBinaryOverlapMatrix |
Author: @haesleinhuepf
October 2019
|
| GenerateDistanceMatrix |
Author: @haesleinhuepf
December 2018
|
| GenerateJaccardIndexMatrix |
Author: @haesleinhuepf
June 2020
|
| GenerateParametricImage |
|
| GenerateParametricImageFromResultsTableColumn |
|
| GenerateTouchCountMatrix |
Author: @haesleinhuepf
June 2020
|
| GenerateTouchMatrix |
Author: @haesleinhuepf
October 2019
|
| GetAutomaticThreshold |
AutomaticThreshold
|
| GetBoundingBox |
Author: @haesleinhuepf
April 2020
|
| GetCenterOfMass |
Author: @haesleinhuepf
April 2020
|
| GetDimensions |
Author: @haesleinhuepf
June 2019
|
| GetGPUProperties |
Author: @haesleinhuepf
September 2019
|
| GetJaccardIndex |
Author: @haesleinhuepf
April 2020
|
| GetMaximumOfAllPixels |
Author: @haesleinhuepf
April 2020
|
| GetMeanOfAllPixels |
Author: @haesleinhuepf
April 2020
|
| GetMeanOfMaskedPixels |
Author: @haesleinhuepf
August 2020
|
| GetMeanSquaredError |
Author: @haesleinhuepf
April 2020
|
| GetMinimumOfAllPixels |
Author: @haesleinhuepf
April 2020
|
| GetSize |
Deprecated. |
| GetSorensenDiceCoefficient |
Author: @haesleinhuepf
April 2020
|
| GetSumOfAllPixels |
Author: @haesleinhuepf
April 2020
|
| GetTimeTracing |
Author: @haesleinhuepf
April 2020
|
| GPUProperties |
Author: @haesleinhuepf
April 2020
|
| GradientX |
Author: @haesleinhuepf
12 2018
|
| GradientY |
Author: @haesleinhuepf
12 2018
|
| GradientZ |
Author: @haesleinhuepf
12 2018
|
| Greater |
Author: @haesleinhuepf
August 2019
|
| GreaterConstant |
Author: @haesleinhuepf
August 2019
|
| GreaterOrEqual |
Author: @haesleinhuepf
August 2019
|
| GreaterOrEqualConstant |
Author: @haesleinhuepf
August 2019
|
| Help |
Author: @haesleinhuepf
12 2018
|
| Histogram |
Author: @haesleinhuepf
December 2019
|
| Image2DToResultsTable |
Deprecated. |
| ImageToStack |
Author: @haesleinhuepf
February 2020
|
| InvalidateKernelCache |
Author: @haesleinhuepf
12 2018
|
| Invert |
Author: @haesleinhuepf
12 2018
|
| JaccardIndex |
Author: @haesleinhuepf
July 2019
|
| LabelCentroidsToPointList |
|
| LabelledSpotsToPointList |
|
| LabelSpots |
|
| LabelToMask |
Author: @haesleinhuepf
August 2019
|
| LabelVoronoiOctagon |
Author: @haesleinhuepf
April 2020
|
| LaplaceBox |
|
| LaplaceDiamond |
|
| ListAvailableGPUs |
Author: @haesleinhuepf
September 2019
|
| LocalThreshold |
Author: @haesleinhuepf
12 2018
|
| Logarithm |
Based on
net.haesleinhuepf.clij.macro.modules.Power.java
Author: @haesleinhuepf
December 2018
modified by: @phaub
July 2019
|
| Mask |
Author: @haesleinhuepf
12 2018
|
| MaskLabel |
Author: @haesleinhuepf
12 2018
|
| MaskStackWithPlane |
Author: @haesleinhuepf
12 2018
|
| MatrixEqual |
|
| Maximum2DBox |
Author: @haesleinhuepf
12 2018
|
| Maximum2DSphere |
Author: @haesleinhuepf
12 2018
|
| Maximum3DBox |
Author: @haesleinhuepf
12 2018
|
| Maximum3DSphere |
Author: @haesleinhuepf
12 2018
|
| MaximumImageAndScalar |
Author: @haesleinhuepf
12 2018
|
| MaximumImages |
Author: @haesleinhuepf
12 2018
|
| MaximumOctagon |
Author: @haesleinhuepf
December 2019
|
| MaximumOfAllPixels |
Author: @haesleinhuepf
December 2018
|
| MaximumOfMaskedPixels |
Author: @haesleinhuepf
12 2018
|
| MaximumOfTouchingNeighbors |
|
| MaximumSliceBySliceSphere |
Author: @haesleinhuepf
12 2018
|
| MaximumXProjection |
Author: @haesleinhuepf
December 2018
|
| MaximumYProjection |
Author: @haesleinhuepf
December 2018
|
| MaximumZProjection |
Author: @haesleinhuepf
December 2018
|
| MaximumZProjectionBounded |
Author: @haesleinhuepf
December 2019
|
| Mean2DBox |
Author: @haesleinhuepf
12 2018
|
| Mean2DSphere |
Author: @haesleinhuepf
December 2018
|
| Mean3DBox |
Author: @haesleinhuepf
12 2018
|
| Mean3DSphere |
Author: @haesleinhuepf
12 2018
|
| MeanClosestSpotDistance |
Author: @haesleinhuepf
July 2019
|
| MeanOfAllPixels |
Author: @haesleinhuepf
December 2018
|
| MeanOfMaskedPixels |
Author: @haesleinhuepf
12 2018
|
| MeanOfPixelsAboveThreshold |
Author: @haesleinhuepf
12 2018
|
| MeanOfTouchingNeighbors |
|
| MeanSliceBySliceSphere |
Author: @haesleinhuepf
12 2018
|
| MeanSquaredError |
Author: @haesleinhuepf
December 2018
|
| MeanXProjection |
Author: @haesleinhuepf
June 2020
|
| MeanYProjection |
Author: @haesleinhuepf
June 2020
|
| MeanZProjection |
Author: @haesleinhuepf
December 2018
|
| MeanZProjectionBounded |
Author: @haesleinhuepf
December 2019
|
| Median2DBox |
Author: @haesleinhuepf
12 2018
|
| Median2DSphere |
Author: @haesleinhuepf
12 2018
|
| Median3DBox |
Author: @haesleinhuepf
12 2018
|
| Median3DSphere |
Author: @haesleinhuepf
12 2018
|
| MedianOfTouchingNeighbors |
|
| MedianSliceBySliceBox |
Author: @haesleinhuepf
12 2018
|
| MedianSliceBySliceSphere |
Author: @haesleinhuepf
12 2018
|
| MedianZProjection |
Author: @haesleinhuepf
June 2019
|
| Minimum2DBox |
Author: @haesleinhuepf
12 2018
|
| Minimum2DSphere |
Author: @haesleinhuepf
12 2018
|
| Minimum3DBox |
Author: @haesleinhuepf
12 2018
|
| Minimum3DSphere |
Author: @haesleinhuepf
12 2018
|
| MinimumDistanceOfTouchingNeighbors |
|
| MinimumImageAndScalar |
Author: @haesleinhuepf
12 2018
|
| MinimumImages |
Author: @haesleinhuepf
12 2018
|
| MinimumOctagon |
Author: @haesleinhuepf
December 2019
|
| MinimumOfAllPixels |
Author: @haesleinhuepf
December 2018
|
| MinimumOfMaskedPixels |
Author: @haesleinhuepf
12 2018
|
| MinimumOfTouchingNeighbors |
|
| MinimumSliceBySliceSphere |
Author: @haesleinhuepf
12 2018
|
| MinimumXProjection |
Author: @haesleinhuepf
June 2020
|
| MinimumYProjection |
Author: @haesleinhuepf
June 2020
|
| MinimumZProjection |
Author: @haesleinhuepf
December 2018
|
| MinimumZProjectionBounded |
Author: @haesleinhuepf
December 2019
|
| MinimumZProjectionThresholdedBounded |
Author: @haesleinhuepf
December 2019
|
| MultiplyImageAndCoordinate |
Author: @haesleinhuepf
December 2018
|
| MultiplyImageAndScalar |
Author: @haesleinhuepf
December 2018
|
| MultiplyImages |
Author: @haesleinhuepf
12 2018
|
| MultiplyImageStackWithScalars |
Author: @haesleinhuepf
December 2018
|
| MultiplyMatrix |
Author: @haesleinhuepf
August 2019
|
| MultiplyStackWithPlane |
Author: @haesleinhuepf
December 2018
|
| NClosestDistances |
|
| NClosestPoints |
|
| NeighborsOfNeighbors |
Author: @haesleinhuepf
May 2020
|
| NonzeroMaximumBox |
|
| NonzeroMaximumDiamond |
|
| NonzeroMinimumBox |
|
| NonzeroMinimumDiamond |
|
| NotEqual |
Author: @haesleinhuepf
August 2019
|
| NotEqualConstant |
Author: @haesleinhuepf
August 2019
|
| OnlyzeroOverwriteMaximumBox |
|
| OnlyzeroOverwriteMaximumDiamond |
|
| OpeningBox |
|
| OpeningDiamond |
|
| Paste2D |
Author: @haesleinhuepf
December 2018
|
| Paste3D |
Author: @haesleinhuepf
December 2018
|
| PointIndexListToMesh |
PointIndexListToMesh
|
| PointlistToLabelledSpots |
Author: @haesleinhuepf
April 2020
|
| Power |
Author: @haesleinhuepf
December 2018
|
| PowerImages |
Author: @haesleinhuepf
August 2019
|
| Print |
Author: @haesleinhuepf
March 2020 in Bordeaux
|
| Pull |
Release
|
| PullAsROI |
|
| PullBinary |
PullBinary
|
| PullLabelsToROIList |
|
| PullLabelsToROIManager |
|
| PullString |
Author: @haesleinhuepf
April 2020
|
| PullToCurrentSlice |
|
| PullToCurrentSliceSelection |
|
| PullToResultsTable |
Author: @haesleinhuepf
April 2020
|
| PullToROIManager |
|
| Push |
Release
|
| PushArray |
Author: @haesleinhuepf
September 2019
|
| PushCurrentSelection |
Release
|
| PushCurrentSlice |
Release
|
| PushCurrentSliceSelection |
Release
|
| PushCurrentZStack |
Release
|
| PushResultsTable |
Author: @haesleinhuepf
April 2020
|
| PushResultsTableColumn |
Author: @haesleinhuepf
April 2020
|
| PushString |
Author: @haesleinhuepf
April 2020
|
| ReduceStack |
Author: @haesleinhuepf
May 2020
|
| Release |
Release
|
| ReplaceIntensities |
|
| ReplaceIntensity |
|
| ReplacePixelsIfZero |
Author: @haesleinhuepf
June 2020
|
| ReportMemory |
Author: @haesleinhuepf
12 2018
|
| Resample |
Author: @haesleinhuepf
12 2018
|
| ResliceBottom |
Author: @haesleinhuepf
12 2018
|
| ResliceLeft |
Author: @haesleinhuepf
12 2018
|
| ResliceRadial |
ResliceRadial
|
| ResliceRadialTop |
ResliceRadial
|
| ResliceRight |
Author: @haesleinhuepf
12 2018
|
| ResliceTop |
Author: @haesleinhuepf
12 2018
|
| ResultsTableColumnToImage |
Author: @haesleinhuepf
April 2020
|
| ResultsTableToImage2D |
Deprecated. |
| Rotate2D |
Author: @haesleinhuepf
12 2018
|
| Rotate3D |
Author: @haesleinhuepf
12 2018
|
| RotateClockwise |
Author: @haesleinhuepf
12 2018
|
| RotateCounterClockwise |
Author: @haesleinhuepf
12 2018
|
| RotateLeft |
Deprecated. |
| RotateRight |
Deprecated. |
| SaveAsTIF |
|
| Scale |
Deprecated. |
| Scale2D |
Author: @haesleinhuepf
12 2018
|
| Scale3D |
Author: @haesleinhuepf
12 2018
|
| Set |
Author: @haesleinhuepf
December 2018
|
| SetColumn |
Author: @haesleinhuepf
December 2018
|
| SetImageBorders |
Author: @haesleinhuepf
March 2020
|
| SetNonZeroPixelsToPixelIndex |
Author: @haesleinhuepf
12 2018
|
| SetPlane |
Author: @haesleinhuepf
December 2018
|
| SetRampX |
Author: @haesleinhuepf
February 2020
|
| SetRampY |
Author: @haesleinhuepf
February 2020
|
| SetRampZ |
Author: @haesleinhuepf
February 2020
|
| SetRandom |
Author: @haesleinhuepf
March 2020
|
| SetRow |
Author: @haesleinhuepf
December 2018
|
| SetWhereXequalsY |
Author: @haesleinhuepf
December 2018
|
| SetWhereXgreaterThanY |
Author: @haesleinhuepf
December 2018
|
| SetWhereXsmallerThanY |
Author: @haesleinhuepf
December 2018
|
| ShortestDistances |
|
| Smaller |
Author: @haesleinhuepf
August 2019
|
| SmallerConstant |
Author: @haesleinhuepf
August 2019
|
| SmallerOrEqual |
Author: @haesleinhuepf
August 2019
|
| SmallerOrEqualConstant |
Author: @haesleinhuepf
August 2019
|
| Sobel |
Author: @ruthhwj, @haesleinhuepf
November 2019
|
| SorensenDiceCoefficient |
Author: @haesleinhuepf
July 2019
|
| SpotsToPointList |
|
| SquaredDifference |
Author: @haesleinhuepf
June 2020
|
| StandardDeviationOfAllPixels |
Author: @haesleinhuepf
September 2019
|
| StandardDeviationOfMaskedPixels |
Author: @haesleinhuepf
September 2019
|
| StandardDeviationOfTouchingNeighbors |
|
| StandardDeviationZProjection |
Author: @haesleinhuepf
June 2019
|
| StartTimeTracing |
Author: @haesleinhuepf
April 2020
|
| StatisticsOfBackgroundAndLabelledPixels |
Author: @haesleinhuepf
April 2020
|
| StatisticsOfImage |
Author: @haesleinhuepf
April 2020
|
| StatisticsOfLabelledPixels |
Author: @haesleinhuepf
September 2019 in Prague
|
| StopTimeTracing |
Author: @haesleinhuepf
April 2020
|
| SubtractImageFromScalar |
Author: @haesleinhuepf
12 2018
|
| SubtractImages |
Author: @haesleinhuepf
12 2018
|
| SumImageSliceBySlice |
Author: @haesleinhuepf
December 2018
|
| SumOfAllPixels |
Author: @haesleinhuepf
December 2018
|
| SumXProjection |
Author: @haesleinhuepf
December 2018
|
| SumYProjection |
Author: @haesleinhuepf
December 2018
|
| SumZProjection |
Author: @haesleinhuepf
December 2018
|
| Threshold |
Author: @haesleinhuepf
December 2018
|
| ThresholdDefault |
ThresholdDefault
|
| ThresholdHuang |
ThresholdHuang
|
| ThresholdIJ_IsoData |
ThresholdIJ_IsoData
|
| ThresholdIntermodes |
ThresholdIntermodes
|
| ThresholdIsoData |
ThresholdIsoData
|
| ThresholdLi |
ThresholdLi
|
| ThresholdMaxEntropy |
ThresholdMaxEntropy
|
| ThresholdMean |
ThresholdMean
|
| ThresholdMinError |
ThresholdMinError
|
| ThresholdMinimum |
ThresholdMinimum
|
| ThresholdMoments |
ThresholdMoments
|
| ThresholdOtsu |
ThresholdOtsu
|
| ThresholdPercentile |
ThresholdPercentile
|
| ThresholdRenyiEntropy |
ThresholdRenyiEntropy
|
| ThresholdShanbhag |
ThresholdShanbhag
|
| ThresholdTriangle |
ThresholdTriangle
|
| ThresholdYen |
ThresholdYen
|
| TopHatBox |
|
| TopHatSphere |
|
| TouchMatrixToAdjacencyMatrix |
Author: @haesleinhuepf
April 2020
|
| TouchMatrixToMesh |
Author: @haesleinhuepf
November 2019
|
| Translate2D |
Author: @haesleinhuepf
12 2018
|
| Translate3D |
Author: @haesleinhuepf
12 2018
|
| TransposeXY |
|
| TransposeXZ |
|
| TransposeYZ |
|
| UndefinedToZero |
Author: @haesleinhuepf
June 2020
|
| VarianceOfAllPixels |
Author: @haesleinhuepf
September 2019
|
| VarianceOfMaskedPixels |
Author: @haesleinhuepf
12 2018
|
| VoronoiLabeling |
Author: @haesleinhuepf
March 2020
|
| VoronoiOctagon |
Author: @haesleinhuepf
March 2020
|
| Watershed |
Author: @haesleinhuepf
December 2018
|
| WriteValuesToPositions |
Author: @haesleinhuepf
June 2019
|