Package net.haesleinhuepf.clij.macro

Class AbstractCLIJPlugin

java.lang.Object

net.haesleinhuepf.clij.macro.AbstractCLIJPlugin

All Implemented Interfaces:

PlugInFilter, CLIJMacroPlugin, SciJavaPlugin

Direct Known Subclasses:

Absolute, AddImageAndScalar, AddImages, AddImagesWeighted, AffineTransform2D, AffineTransform3D, ApplyVectorField2D, ApplyVectorField3D, ArgMaximumZProjection, AutomaticThreshold, BinaryAnd, BinaryNot, BinaryOr, BinaryXOr, Blur2D, Blur3D, Blur3DSliceBySlice, CenterOfMass, Clear, ClInfo, ConvertFloat, ConvertUInt16, ConvertUInt8, Copy, CopySlice, CountNonZeroPixels2DSphere, CountNonZeroPixelsSliceBySliceSphere, CountNonZeroVoxels3DSphere, Create2D, Create3D, Crop2D, Crop3D, DetectMaximaBox, DetectMaximaSliceBySliceBox, DetectMinimaBox, DetectMinimaSliceBySliceBox, DilateBox, DilateBoxSliceBySlice, DilateSphere, DilateSphereSliceBySlice, DivideImages, Downsample2D, Downsample3D, DownsampleSliceBySliceHalfMedian, ErodeBox, ErodeBoxSliceBySlice, ErodeSphere, ErodeSphereSliceBySlice, Flip2D, Flip3D, GradientX, GradientY, GradientZ, Help, Histogram, Invert, LocalThreshold, Mask, MaskStackWithPlane, Maximum2DBox, Maximum2DSphere, Maximum3DBox, Maximum3DSphere, MaximumImageAndScalar, MaximumImages, MaximumOfAllPixels, MaximumSliceBySliceSphere, MaximumXYZProjection, MaximumZProjection, Mean2DBox, Mean2DSphere, Mean3DBox, Mean3DSphere, MeanOfAllPixels, MeanSliceBySliceSphere, MeanZProjection, Median2DBox, Median2DSphere, Median3DBox, Median3DSphere, MedianSliceBySliceBox, MedianSliceBySliceSphere, Minimum2DBox, Minimum2DSphere, Minimum3DBox, Minimum3DSphere, MinimumImageAndScalar, MinimumImages, MinimumOfAllPixels, MinimumSliceBySliceSphere, MinimumZProjection, MultiplyImageAndScalar, MultiplyImages, MultiplyStackWithPlane, Power, Pull, PullBinary, Push, PushCurrentSlice, PushCurrentZStack, Release, ReportMemory, ResliceBottom, ResliceLeft, ResliceRadial, ResliceRight, ResliceTop, Rotate2D, Rotate3D, RotateLeft, RotateRight, Scale2D, Scale3D, Set, SubtractImages, SumOfAllPixels, SumZProjection, Threshold, Translate2D, Translate3D

public abstract class AbstractCLIJPlugin
extends Object
implements PlugInFilter, CLIJMacroPlugin

AbstractCLIJPlugin

Author: @haesleinhuepf December 2018

Field Summary

Fields

Modifier and Type	Field	Description
protected Object[]	args
protected net.haesleinhuepf.clij.CLIJ	clij
protected static Object[]	default_values
protected String	name

Fields inherited from interface ij.plugin.filter.PlugInFilter

CONVERT_TO_FLOAT, DOES_16, DOES_32, DOES_8C, DOES_8G, DOES_ALL, DOES_RGB, DOES_STACKS, DONE, FINAL_PROCESSING, KEEP_THRESHOLD, NO_CHANGES, NO_IMAGE_REQUIRED, NO_UNDO, NO_UNDO_RESET, PARALLELIZE_IMAGES, PARALLELIZE_STACKS, ROI_REQUIRED, SNAPSHOT, STACK_REQUIRED, SUPPORTS_MASKING

Constructor Summary

Constructors

Constructor	Description
AbstractCLIJPlugin()

Method Summary

Modifier and Type	Method	Description
static Boolean	asBoolean(Object object)
static Float	asFloat(Object number)
static Integer	asInteger(Object number)
protected boolean	containsCLBufferArguments()	Deprecated.
protected boolean	containsCLImageArguments()	Deprecated.
net.haesleinhuepf.clij.clearcl.ClearCLBuffer	createOutputBufferFromSource(net.haesleinhuepf.clij.clearcl.ClearCLBuffer input)
Object[]	getDefaultValues()
protected String	getImageVariableName(String destinationName)
String	getName()
protected Object[]	imageJ2Args()	Deprecated.
protected Object[]	imageJArgs()	Deprecated.
protected Object[]	openCLBufferArgs()	Deprecated.
protected Object[]	openCLImageArgs()	Deprecated.
protected void	releaseBuffers(Object[] args)	Deprecated.
protected void	releaseImages(Object[] args)	Deprecated.
void	run(ImageProcessor ip)
void	setArgs(Object[] args)
void	setClij(net.haesleinhuepf.clij.CLIJ clij)
int	setup(String arg, ImagePlus imp)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.haesleinhuepf.clij.macro.CLIJMacroPlugin

getParameterHelpText

Field Detail

clij

protected net.haesleinhuepf.clij.CLIJ clij

args

protected Object[] args

default_values

protected static Object[] default_values

name

protected String name

Constructor Detail

AbstractCLIJPlugin

public AbstractCLIJPlugin()

Method Detail

setClij

public void setClij(net.haesleinhuepf.clij.CLIJ clij)

Specified by:

setClij in interface CLIJMacroPlugin

setArgs

public void setArgs(Object[] args)

Specified by:

setArgs in interface CLIJMacroPlugin

imageJArgs

@Deprecated
protected Object[] imageJArgs()

Deprecated.

openCLBufferArgs

@Deprecated
protected Object[] openCLBufferArgs()

Deprecated.

openCLImageArgs

@Deprecated
protected Object[] openCLImageArgs()

Deprecated.

imageJ2Args

@Deprecated
protected Object[] imageJ2Args()

Deprecated.

containsCLImageArguments

@Deprecated
protected boolean containsCLImageArguments()

Deprecated.

releaseImages

@Deprecated
protected void releaseImages(Object[] args)

Deprecated.

releaseBuffers

@Deprecated
protected void releaseBuffers(Object[] args)

Deprecated.

containsCLBufferArguments

@Deprecated
protected boolean containsCLBufferArguments()

Deprecated.

asFloat

public static Float asFloat(Object number)

asBoolean

public static Boolean asBoolean(Object object)

asInteger

public static Integer asInteger(Object number)

createOutputBufferFromSource

public net.haesleinhuepf.clij.clearcl.ClearCLBuffer createOutputBufferFromSource(net.haesleinhuepf.clij.clearcl.ClearCLBuffer input)

Specified by:

createOutputBufferFromSource in interface CLIJMacroPlugin

setup

public int setup(String arg,
                 ImagePlus imp)

Specified by:

setup in interface PlugInFilter

run

public void run(ImageProcessor ip)

Specified by:

run in interface PlugInFilter

getDefaultValues

public Object[] getDefaultValues()

getImageVariableName

protected String getImageVariableName(String destinationName)

getName

public String getName()

Specified by:

getName in interface CLIJMacroPlugin