umcg.genetica.collections

Class ChrPosTreeMap<E>

java.lang.Object

umcg.genetica.collections.ChrPosTreeMap<E>

All Implemented Interfaces:

Iterable<E>

public class ChrPosTreeMap<E>
extends Object
implements Iterable<E>

Author:

Patrick Deelen

Constructor Summary

Constructors

Constructor and Description
ChrPosTreeMap()

Method Summary

Modifier and Type	Method and Description
Iterator<E>	chrIterator(String chr)
E	get(String chr, Integer pos)
Iterator<ChrPos>	getChrPosIterator() not tested
Iterable<Integer>	getChrPositions(String chr)
Iterable<String>	getChrs()
Iterator<E>	iterator()
void	put(String chr, Integer pos, E element)
E	remove(String chr, Integer pos)
int	size()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.lang.Iterable

forEach, spliterator

Constructor Detail

ChrPosTreeMap

public ChrPosTreeMap()

Method Detail

put

public void put(String chr,
                Integer pos,
                E element)

get

public E get(String chr,
             Integer pos)

Parameters:

chr -

pos -

Returns:

null if not found

remove

public E remove(String chr,
                Integer pos)

Parameters:

chr -

pos -

Returns:

the removed element or null

chrIterator

public Iterator<E> chrIterator(String chr)

getChrs

public Iterable<String> getChrs()

getChrPositions

public Iterable<Integer> getChrPositions(String chr)

getChrPosIterator

public Iterator<ChrPos> getChrPosIterator()

not tested

Returns:

iterator

public Iterator<E> iterator()

Specified by:

iterator in interface Iterable<E>

size

public int size()