umcg.genetica.collections.intervaltree

Class PerChrIntervalTree<E extends Range>

java.lang.Object

umcg.genetica.collections.intervaltree.PerChrIntervalTree<E>

public class PerChrIntervalTree<E extends Range>
extends Object

Author:

Patrick Deelen

Constructor Summary

Constructors

Constructor and Description
PerChrIntervalTree(Class<E> classE)

Method Summary

Modifier and Type	Method and Description
void	addChrElements(String chr, List<E> elements)
static <T extends GenomicRange> PerChrIntervalTree<T>	createFromChrGroupedIterable(Iterable<T> elements, Class<T> classT) Elements must be grouped per chromosome
List<E>	searchPosition(String chr, int pos)
int	size()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PerChrIntervalTree

public PerChrIntervalTree(Class<E> classE)

Method Detail

addChrElements

public void addChrElements(String chr,
                           List<E> elements)
                    throws Exception

Throws:

Exception

searchPosition

public List<E> searchPosition(String chr,
                              int pos)

size

public int size()

createFromChrGroupedIterable

public static <T extends GenomicRange> PerChrIntervalTree<T> createFromChrGroupedIterable(Iterable<T> elements,
                                                                                          Class<T> classT)
                                                                                   throws Exception

Elements must be grouped per chromosome

Parameters:

elements -

Returns:

Throws:

Exception