Uses of Class
umcg.genetica.collections.intervaltree.PerChrIntervalTree

Packages that use PerChrIntervalTree

Package	Description
umcg.genetica.collections.intervaltree
umcg.genetica.io.bed
umcg.genetica.io.bedgraph
umcg.genetica.io.gtf

Uses of PerChrIntervalTree in umcg.genetica.collections.intervaltree

Methods in umcg.genetica.collections.intervaltree that return PerChrIntervalTree

Modifier and Type	Method and Description
static <T extends GenomicRange> PerChrIntervalTree<T>	PerChrIntervalTree.createFromChrGroupedIterable(Iterable<T> elements, Class<T> classT) Elements must be grouped per chromosome

Uses of PerChrIntervalTree in umcg.genetica.io.bed

Methods in umcg.genetica.io.bed that return PerChrIntervalTree

Modifier and Type	Method and Description
PerChrIntervalTree<BedEntry>	BedFile.createIntervalTree()

Uses of PerChrIntervalTree in umcg.genetica.io.bedgraph

Methods in umcg.genetica.io.bedgraph that return PerChrIntervalTree

Modifier and Type	Method and Description
PerChrIntervalTree<BedGraphEntry>	BedGraphFile.createIntervalTree()

Uses of PerChrIntervalTree in umcg.genetica.io.gtf

Methods in umcg.genetica.io.gtf that return PerChrIntervalTree

Modifier and Type	Method and Description
PerChrIntervalTree<GffElement>	GtfReader.createIntervalTree()