| Package | Description |
|---|---|
| umcg.genetica.collections.intervaltree | |
| umcg.genetica.io.bed | |
| umcg.genetica.io.bedgraph | |
| umcg.genetica.io.gtf | |
| umcg.genetica.variantAnnotator |
| Modifier and Type | Class and Description |
|---|---|
class |
IntervalTree<E extends Range> |
class |
PerChrIntervalTree<E extends Range> |
| Modifier and Type | Class and Description |
|---|---|
class |
StringRange |
| Modifier and Type | Method and Description |
|---|---|
int |
RangeEndReverseComparator.compare(Range o1,
Range o2) |
int |
RangeStartComparator.compare(Range o1,
Range o2) |
| Constructor and Description |
|---|
IntervalTree(E[] elements,
Class<E> classE) |
| Modifier and Type | Class and Description |
|---|---|
class |
BedEntry |
| Modifier and Type | Class and Description |
|---|---|
class |
BedGraphEntry |
| Modifier and Type | Class and Description |
|---|---|
class |
GffElement |
| Modifier and Type | Interface and Description |
|---|---|
interface |
GenomicRange |
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