umcg.genetica.containers

Class Gene

java.lang.Object

umcg.genetica.containers.Gene

public class Gene
extends Object

Author:

harmjan

Constructor Summary

Constructors

Constructor and Description
Gene()

Method Summary

Modifier and Type	Method and Description
void	addTranscript(Transcript currTra)
String	getAnnotation()
int	getEnd()
String	getName()
Chromosome	getParentChromosome()
int	getStart()
int	getStrand()
HashMap<String,Transcript>	getTranscripts()
void	setAnnotation(String annotation)
void	setEnd(int end)
void	setName(String name)
void	setParentChromosome(Chromosome parentChromosome)
void	setStart(int start)
void	setStrand(int strand)
void	setTranscripts(HashMap<String,Transcript> transcripts)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Gene

public Gene()

Method Detail

getParentChromosome

public Chromosome getParentChromosome()

Returns:

the parentChromosome

setParentChromosome

public void setParentChromosome(Chromosome parentChromosome)

Parameters:

parentChromosome - the parentChromosome to set

getTranscripts

public HashMap<String,Transcript> getTranscripts()

Returns:

the transcripts

setTranscripts

public void setTranscripts(HashMap<String,Transcript> transcripts)

Parameters:

transcripts - the transcripts to set

getStart

public int getStart()

Returns:

the start

setStart

public void setStart(int start)

Parameters:

start - the start to set

getEnd

public int getEnd()

Returns:

the end

setEnd

public void setEnd(int end)

Parameters:

end - the end to set

getStrand

public int getStrand()

Returns:

the strand

setStrand

public void setStrand(int strand)

Parameters:

strand - the strand to set

getName

public String getName()

Returns:

the name

setName

public void setName(String name)

Parameters:

name - the name to set

addTranscript

public void addTranscript(Transcript currTra)

setAnnotation

public void setAnnotation(String annotation)

getAnnotation

public String getAnnotation()