Uses of Class
umcg.genetica.containers.Pair

Packages that use Pair

Package	Description
umcg.genetica.containers
umcg.genetica.io.probemapping
umcg.genetica.io.text
umcg.genetica.io.trityper
umcg.genetica.io.trityper.util
umcg.genetica.math
umcg.genetica.math.matrix
umcg.genetica.math.matrix2
umcg.genetica.math.stats
umcg.genetica.math.stats.concurrent

Uses of Pair in umcg.genetica.containers

Methods in umcg.genetica.containers with parameters of type Pair

Modifier and Type	Method and Description
int	Pair.compareTo(Pair<L,R> toCompare)

Uses of Pair in umcg.genetica.io.probemapping

Methods in umcg.genetica.io.probemapping that return types with arguments of type Pair

Modifier and Type	Method and Description
static HashMap<Integer,HashMap<String,Pair<Integer,Integer>>>	reading.readAnnotationFileHashMap2(String annotationFile, boolean firstRowAsHeader, int key, int val1, int val2, int val3, int sizeMap)
static HashMap<String,Pair<String,Double>>	reading.readMetaAnalysisResults(String metaAnalysisScores, boolean firstRowAsHeader, int key, int val1, int val2, int sizeMap)

Uses of Pair in umcg.genetica.io.text

Methods in umcg.genetica.io.text that return types with arguments of type Pair

Modifier and Type	Method and Description
HashSet<Pair<String,String>>	TextFile.readAsPairs(int A, int B)

Uses of Pair in umcg.genetica.io.trityper

Methods in umcg.genetica.io.trityper with parameters of type Pair

Modifier and Type	Method and Description
void	TriTyperExpressionData.setPathwayDefinitions(Pair<List<String>,List<List<String>>> pathwayDefinitions)

Constructors in umcg.genetica.io.trityper with parameters of type Pair

Constructor and Description
TriTyperGeneticalGenomicsDataset(TriTyperGeneticalGenomicsDatasetSettings settings, Pair<List<String>,List<List<String>>> pathwayDefinitions)

Uses of Pair in umcg.genetica.io.trityper.util

Methods in umcg.genetica.io.trityper.util that return Pair

Modifier and Type	Method and Description
Pair<Double,Double>	DetermineLD.getLD(SNP snpX, SNP snpY, TriTyperGenotypeData genotypeData, int individualsToInclude, boolean print)

Uses of Pair in umcg.genetica.math

Methods in umcg.genetica.math that return Pair

Modifier and Type	Method and Description
static Pair<Integer,Integer>	Goniometry.calcPosOnCircle(double r, double originX, double originY, double angle)

Uses of Pair in umcg.genetica.math.matrix

Methods in umcg.genetica.math.matrix that return Pair

Modifier and Type	Method and Description
static Pair<Integer,Integer>	MatrixTools.getIndexOfFirstNaN(double[][] a)
static Pair<Integer,Integer>	MatrixTools.getIndexOfFirstNegative(double[][] a)
static Pair<Integer,Integer>	MatrixTools.getIndexOfFirstZero(double[][] a)
static Pair<Integer,Integer>	MatrixTools.getIndexOfFirstZeroIgnoreDiagonal(double[][] a)

Uses of Pair in umcg.genetica.math.matrix2

Methods in umcg.genetica.math.matrix2 that return Pair

Modifier and Type	Method and Description
static Pair<Integer,Integer>	MatrixTools.getIndexOfFirstNaN(cern.colt.matrix.tdouble.DoubleMatrix2D a)
static Pair<Integer,Integer>	MatrixTools.getIndexOfFirstNegative(cern.colt.matrix.tdouble.DoubleMatrix2D a)
static Pair<Integer,Integer>	MatrixTools.getIndexOfFirstZero(cern.colt.matrix.tdouble.DoubleMatrix2D a)
static Pair<Integer,Integer>	MatrixTools.getIndexOfFirstZeroIgnoreDiagonal(cern.colt.matrix.tdouble.DoubleMatrix2D a)

Uses of Pair in umcg.genetica.math.stats

Methods in umcg.genetica.math.stats that return Pair

Modifier and Type	Method and Description
static Pair<Double,Double>	Heterogeneity.getISq(double[] datasetZ, int[] datasetWeights)
static Pair<Double,Double>	Heterogeneity.getISq(Double[] datasetZ, int[] datasetWeights)
static Pair<Double,Double>	Descriptives.mean(double[] v, double[] w) Simultainiusly calculates mean for two double[] of the same lengths Warning: Does not check if the lenght is identical!

Uses of Pair in umcg.genetica.math.stats.concurrent

Methods in umcg.genetica.math.stats.concurrent that return Pair

Modifier and Type	Method and Description
Pair<Integer,double[]>	ConcurrentCovariationTask.call()
Pair<Integer,double[]>	ConcurrentCorrelationTask.call()