Features (genetica-libraries 1.0.5 API)

Constructors
Constructor and Description
`Features()`

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`HashMap<String,Chromosome>`	`getChromosomeHash()`
`Exon`	`getExon(String match)`
`HashMap<String,Exon>`	`getExonHash()`
`HashMap<String,Gene>`	`getGeneHash()`
`Transcript`	`getTranscript(String match)`
`HashMap<String,Transcript>`	`getTranscriptHash()`
`void`	`loadAnnotation(String fileName)`
`void`	`setChromosomeHash(HashMap<String,Chromosome> chromosomeHash)`
`void`	`setExonHash(HashMap<String,Exon> exonHash)`
`void`	`setGeneHash(HashMap<String,Gene> geneHash)`
`void`	`setTranscriptHash(HashMap<String,Transcript> transcriptHash)`

public HashMap<String,Chromosome> getChromosomeHash()

public void setChromosomeHash(HashMap<String,Chromosome> chromosomeHash)

public HashMap<String,Gene> getGeneHash()

public void setGeneHash(HashMap<String,Gene> geneHash)

public HashMap<String,Transcript> getTranscriptHash()

public void setTranscriptHash(HashMap<String,Transcript> transcriptHash)

public HashMap<String,Exon> getExonHash()

public void setExonHash(HashMap<String,Exon> exonHash)

public void loadAnnotation(String fileName)
                    throws IOException

public Transcript getTranscript(String match)

Class Features