umcg.genetica.genomicboundaries

Class GenomicBoundariesSimple

java.lang.Object

umcg.genetica.genomicboundaries.GenomicBoundariesSimple

public class GenomicBoundariesSimple
extends Object

Author:

PatrickDeelen

Constructor Summary

Constructors

Constructor and Description
GenomicBoundariesSimple(String genomicsBoundarysFilePath)
GenomicBoundariesSimple(String genomicsBoundarysFilePath, int margin)

Method Summary

Modifier and Type	Method and Description
GenomicBoundary	getBoundary(String chromosome, int position)
Set<String>	getChromosomes()
boolean	isChromosomeInBoundary(String chromosome)
boolean	isInBoundary(String chromosome, int position)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GenomicBoundariesSimple

public GenomicBoundariesSimple(String genomicsBoundarysFilePath)
                        throws FileNotFoundException,
                               IOException

Throws:

FileNotFoundException

IOException

GenomicBoundariesSimple

public GenomicBoundariesSimple(String genomicsBoundarysFilePath,
                               int margin)
                        throws FileNotFoundException,
                               IOException

Throws:

FileNotFoundException

IOException

Method Detail

isChromosomeInBoundary

public boolean isChromosomeInBoundary(String chromosome)

getChromosomes

public Set<String> getChromosomes()

isInBoundary

public boolean isInBoundary(String chromosome,
                            int position)

getBoundary

public GenomicBoundary getBoundary(String chromosome,
                                   int position)