Uses of Class
umcg.genetica.genomicboundaries.GenomicBoundary

Packages that use GenomicBoundary

Package	Description
umcg.genetica.genomicboundaries

Uses of GenomicBoundary in umcg.genetica.genomicboundaries

Methods in umcg.genetica.genomicboundaries that return GenomicBoundary

Modifier and Type	Method and Description
GenomicBoundary	GenomicBoundariesSimple.getBoundary(String chromosome, int position)
GenomicBoundary	GenomicBoundaries.getBoundary(String chromosome, int position, int listIndex) This method returns a Boundary object from a chromosome at a specific position.
GenomicBoundary<V>	GenomicBoundariesIterator.next()

Methods in umcg.genetica.genomicboundaries that return types with arguments of type GenomicBoundary

Modifier and Type	Method and Description
HashMap<String,TreeMap<Integer,ArrayList<GenomicBoundary<V>>>>	GenomicBoundaries.getGenomicBoundaries() Returns the GenomicBoundaries
Collection<ArrayList<GenomicBoundary<V>>>	GenomicBoundaries.getGenomicBoundaries(String chromosome) Returns the GenomicBoundaries
TreeMap<Integer,ArrayList<GenomicBoundary<V>>>	GenomicBoundaries.getGenomicBoundariesMap(String chromosome) Returns a TreeMap> if the provided chromosome is present with genomicsBoundaries.
Iterator<GenomicBoundary<V>>	GenomicBoundaries.iterator()

Methods in umcg.genetica.genomicboundaries with parameters of type GenomicBoundary

Modifier and Type	Method and Description
int	GenomicBoundary.compareTo(GenomicBoundary other)
boolean	GenomicBoundary.isOverlaping(GenomicBoundary other)
boolean	GenomicBoundary.isPartOfBoundary(GenomicBoundary other) Is this boundary a sub boundary of the other boundary.

Constructor parameters in umcg.genetica.genomicboundaries with type arguments of type GenomicBoundary

Constructor and Description
GenomicBoundariesIterator(HashMap<String,TreeMap<Integer,ArrayList<GenomicBoundary<V>>>> genomicsBoundaries)