umcg.genetica.graphics

Class ForestPlot

java.lang.Object

umcg.genetica.graphics.ForestPlot

public class ForestPlot
extends Object

Author:

harm-jan

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	ForestPlot.Output

Constructor Summary

Constructors

Constructor and Description
ForestPlot()

Method Summary

Modifier and Type	Method and Description
GeneralPath	drawDiamond(int x, int y, int width, int height)
void	drawForrestPlot(String xAxisName, String[] yAxisNames, Double[] xValues, String filename, ForestPlot.Output output, double[] significanceThresholds, Double minX, Double maxX, int[] weights, byte[] chr, int[] chrpos, int metaRow)
void	drawMultiForrestPlot(String xAxisName, String[] yAxisNames, Double[][] xValues, String filename, ForestPlot.Output output, double[] significanceThresholds, Double minX, Double maxX, int[] weights, byte[] chr, int[] chrpos, int metaRow)
int	getWidth(String text, Font font)
void	setGeneNames(String[] geneNames)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ForestPlot

public ForestPlot()

Method Detail

drawForrestPlot

public void drawForrestPlot(String xAxisName,
                            String[] yAxisNames,
                            Double[] xValues,
                            String filename,
                            ForestPlot.Output output,
                            double[] significanceThresholds,
                            Double minX,
                            Double maxX,
                            int[] weights,
                            byte[] chr,
                            int[] chrpos,
                            int metaRow)
                     throws IOException,
                            com.lowagie.text.DocumentException

Throws:

IOException

com.lowagie.text.DocumentException

setGeneNames

public void setGeneNames(String[] geneNames)

drawMultiForrestPlot

public void drawMultiForrestPlot(String xAxisName,
                                 String[] yAxisNames,
                                 Double[][] xValues,
                                 String filename,
                                 ForestPlot.Output output,
                                 double[] significanceThresholds,
                                 Double minX,
                                 Double maxX,
                                 int[] weights,
                                 byte[] chr,
                                 int[] chrpos,
                                 int metaRow)
                          throws IOException,
                                 com.lowagie.text.DocumentException

Throws:

IOException

com.lowagie.text.DocumentException

getWidth

public int getWidth(String text,
                    Font font)

drawDiamond

public GeneralPath drawDiamond(int x,
                               int y,
                               int width,
                               int height)