public class BedGraphFile extends Object implements Iterable<BedGraphEntry>
| Constructor and Description |
|---|
BedGraphFile(File bedGraphFile) |
BedGraphFile(File bedGraphFile,
boolean omitChr,
boolean makeOneBased) |
BedGraphFile(String bedGraphFilePath) |
BedGraphFile(String bedGraphFilePath,
boolean omitChr,
boolean makeOneBased) |
| Modifier and Type | Method and Description |
|---|---|
PerChrIntervalTree<BedGraphEntry> |
createIntervalTree() |
Iterator<BedGraphEntry> |
iterator() |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, waitforEach, spliteratorpublic BedGraphFile(String bedGraphFilePath) throws FileNotFoundException, IOException
FileNotFoundExceptionIOExceptionpublic BedGraphFile(String bedGraphFilePath, boolean omitChr, boolean makeOneBased) throws FileNotFoundException, IOException
FileNotFoundExceptionIOExceptionpublic BedGraphFile(File bedGraphFile) throws FileNotFoundException, IOException
FileNotFoundExceptionIOExceptionpublic BedGraphFile(File bedGraphFile, boolean omitChr, boolean makeOneBased) throws FileNotFoundException, IOException
FileNotFoundExceptionIOExceptionpublic Iterator<BedGraphEntry> iterator()
iterator in interface Iterable<BedGraphEntry>public PerChrIntervalTree<BedGraphEntry> createIntervalTree() throws Exception
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