umcg.genetica.io.binInteraction

Class BinaryInteractionFileConstructorBuilder

java.lang.Object

umcg.genetica.io.binInteraction.BinaryInteractionFileConstructorBuilder

public class BinaryInteractionFileConstructorBuilder
extends Object

Constructor Summary

Constructors

Constructor and Description
BinaryInteractionFileConstructorBuilder()

Method Summary

Modifier and Type	Method and Description
BinaryInteractionFile	createBinaryInteractionFile()
BinaryInteractionFileConstructorBuilder	setAllCovariants(boolean allCovariants)
BinaryInteractionFileConstructorBuilder	setCohorts(BinaryInteractionCohort[] cohorts)
BinaryInteractionFileConstructorBuilder	setCovariates(String[] covariates)
BinaryInteractionFileConstructorBuilder	setCovariatesTested(int[][] covariatesTested)
BinaryInteractionFileConstructorBuilder	setFileDescription(String fileDescription)
BinaryInteractionFileConstructorBuilder	setFlippedZscoreStored(boolean flippedZscoreStored)
BinaryInteractionFileConstructorBuilder	setGenes(BinaryInteractionGene[] genes)
BinaryInteractionFileConstructorBuilder	setInteractionFile(File interactionFile)
BinaryInteractionFileConstructorBuilder	setInteractions(long interactions)
BinaryInteractionFileConstructorBuilder	setMetaAnalysis(boolean metaAnalysis)
BinaryInteractionFileConstructorBuilder	setNormalQtlStored(boolean normalQtlStored)
BinaryInteractionFileConstructorBuilder	setReadOnly(boolean readOnly)
BinaryInteractionFileConstructorBuilder	setStartInteractionBlock(long startInteractionBlock)
BinaryInteractionFileConstructorBuilder	setStartQtlBlock(long startQtlBlock)
BinaryInteractionFileConstructorBuilder	setTimeStamp(long timeStamp)
BinaryInteractionFileConstructorBuilder	setVariants(BinaryInteractionVariant[] variants)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BinaryInteractionFileConstructorBuilder

public BinaryInteractionFileConstructorBuilder()

Method Detail

setInteractionFile

public BinaryInteractionFileConstructorBuilder setInteractionFile(File interactionFile)

setReadOnly

public BinaryInteractionFileConstructorBuilder setReadOnly(boolean readOnly)

setCohorts

public BinaryInteractionFileConstructorBuilder setCohorts(BinaryInteractionCohort[] cohorts)

setGenes

public BinaryInteractionFileConstructorBuilder setGenes(BinaryInteractionGene[] genes)

setVariants

public BinaryInteractionFileConstructorBuilder setVariants(BinaryInteractionVariant[] variants)

setCovariatesTested

public BinaryInteractionFileConstructorBuilder setCovariatesTested(int[][] covariatesTested)

setCovariates

public BinaryInteractionFileConstructorBuilder setCovariates(String[] covariates)

setTimeStamp

public BinaryInteractionFileConstructorBuilder setTimeStamp(long timeStamp)

setAllCovariants

public BinaryInteractionFileConstructorBuilder setAllCovariants(boolean allCovariants)

setMetaAnalysis

public BinaryInteractionFileConstructorBuilder setMetaAnalysis(boolean metaAnalysis)

setNormalQtlStored

public BinaryInteractionFileConstructorBuilder setNormalQtlStored(boolean normalQtlStored)

setFlippedZscoreStored

public BinaryInteractionFileConstructorBuilder setFlippedZscoreStored(boolean flippedZscoreStored)

setFileDescription

public BinaryInteractionFileConstructorBuilder setFileDescription(String fileDescription)

setInteractions

public BinaryInteractionFileConstructorBuilder setInteractions(long interactions)

setStartQtlBlock

public BinaryInteractionFileConstructorBuilder setStartQtlBlock(long startQtlBlock)

setStartInteractionBlock

public BinaryInteractionFileConstructorBuilder setStartInteractionBlock(long startInteractionBlock)

createBinaryInteractionFile

public BinaryInteractionFile createBinaryInteractionFile()
                                                  throws BinaryInteractionFileException,
                                                         FileNotFoundException,
                                                         IOException

Throws:

BinaryInteractionFileException

FileNotFoundException

IOException