umcg.genetica.io.binInteraction

Class BinaryInteractionFileCreator

java.lang.Object

umcg.genetica.io.binInteraction.BinaryInteractionFileCreator

public class BinaryInteractionFileCreator
extends Object

Author:

Patrick Deelen

Constructor Summary

Constructors

Constructor and Description
BinaryInteractionFileCreator(File file, BinaryInteractionVariantCreator[] variants, BinaryInteractionGeneCreator[] genes, BinaryInteractionCohort[] cohorts, String[] covariates, boolean allCovariants, boolean metaAnalysis, boolean normalQtlStored, boolean flippedZscoreStored)

Method Summary

Modifier and Type	Method and Description
void	addTestedInteraction(String variantName, String geneName, String[] covariateNames)
void	addTestedVariantGene(String variantName, String geneName)
BinaryInteractionFile	create()
void	setDescription(String description)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BinaryInteractionFileCreator

public BinaryInteractionFileCreator(File file,
                                    BinaryInteractionVariantCreator[] variants,
                                    BinaryInteractionGeneCreator[] genes,
                                    BinaryInteractionCohort[] cohorts,
                                    String[] covariates,
                                    boolean allCovariants,
                                    boolean metaAnalysis,
                                    boolean normalQtlStored,
                                    boolean flippedZscoreStored)
                             throws BinaryInteractionFileException,
                                    IOException

Parameters:

file -

variants -

genes -

cohorts -

covariates -

allCovariants -

metaAnalysis -

normalQtlStored -

flippedZscoreStored -

Throws:

BinaryInteractionFileException

IOException

Method Detail

addTestedVariantGene

public void addTestedVariantGene(String variantName,
                                 String geneName)
                          throws BinaryInteractionFileException

Throws:

BinaryInteractionFileException

addTestedInteraction

public void addTestedInteraction(String variantName,
                                 String geneName,
                                 String[] covariateNames)
                          throws BinaryInteractionFileException

Throws:

BinaryInteractionFileException

create

public BinaryInteractionFile create()
                             throws FileNotFoundException,
                                    IOException,
                                    BinaryInteractionFileException

Throws:

FileNotFoundException

IOException

BinaryInteractionFileException

setDescription

public void setDescription(String description)