umcg.genetica.io.binInteraction

Class BinaryInteractionZscores

java.lang.Object

umcg.genetica.io.binInteraction.BinaryInteractionZscores

public class BinaryInteractionZscores
extends Object

Author:

Patrick Deelen

Field Summary

Fields

Modifier and Type	Field and Description
protected static double[]	emptyDoubleArray
protected static int[]	emptyIntArray

Constructor Summary

Constructors

Constructor and Description
BinaryInteractionZscores(double zscoreSnpMeta, double zscoreCovariateMeta, double zscoreInteractionMeta)
BinaryInteractionZscores(double zscoreSnpMeta, double zscoreCovariateMeta, double zscoreInteractionMeta, double zscoreInteractionFlippedMeta)
BinaryInteractionZscores(int[] samplesInteractionCohort, double[] zscoreSnpCohort, double[] zscoreCovariateCohort, double[] zscoreInteractionCohort, double[] rSquaredCohort)
BinaryInteractionZscores(int[] samplesInteractionCohort, double[] zscoreSnpCohort, double[] zscoreCovariateCohort, double[] zscoreInteractionCohort, double[] rSquaredCohort, double[] zscoreInteractionFlippedCohort)
BinaryInteractionZscores(int[] samplesInteractionCohort, double[] zscoreSnpCohort, double[] zscoreCovariateCohort, double[] zscoreInteractionCohort, double[] rSquaredCohort, double[] zscoreInteractionFlippedCohort, double zscoreSnpMeta, double zscoreCovariateMeta, double zscoreInteractionMeta, double zscoreInteractionFlippedMeta)
BinaryInteractionZscores(int[] samplesInteractionCohort, double[] zscoreSnpCohort, double[] zscoreCovariateCohort, double[] zscoreInteractionCohort, double[] rSquaredCohort, double zscoreSnpMeta, double zscoreCovariateMeta, double zscoreInteractionMeta)
BinaryInteractionZscores(int samplesInteractionCohort, double zscoreSnpCohort, double zscoreCovariateCohort, double zscoreInteractionCohort, double rSquaredCohort, double zscoreInteractionFlippedCohort)

Method Summary

Modifier and Type	Method and Description
int	getCohortCount()
double[]	getrSquaredCohort()
int[]	getSamplesInteractionCohort()
double[]	getZscoreCovariateCohort()
double	getZscoreCovariateMeta()
double[]	getZscoreInteractionCohort()
double[]	getZscoreInteractionFlippedCohort()
double	getZscoreInteractionFlippedMeta()
double	getZscoreInteractionMeta()
double[]	getZscoreSnpCohort()
double	getZscoreSnpMeta()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

emptyDoubleArray

protected static final double[] emptyDoubleArray

emptyIntArray

protected static final int[] emptyIntArray

Constructor Detail

BinaryInteractionZscores

public BinaryInteractionZscores(int[] samplesInteractionCohort,
                                double[] zscoreSnpCohort,
                                double[] zscoreCovariateCohort,
                                double[] zscoreInteractionCohort,
                                double[] rSquaredCohort,
                                double[] zscoreInteractionFlippedCohort,
                                double zscoreSnpMeta,
                                double zscoreCovariateMeta,
                                double zscoreInteractionMeta,
                                double zscoreInteractionFlippedMeta)
                         throws BinaryInteractionFileException

Throws:

BinaryInteractionFileException

BinaryInteractionZscores

public BinaryInteractionZscores(int[] samplesInteractionCohort,
                                double[] zscoreSnpCohort,
                                double[] zscoreCovariateCohort,
                                double[] zscoreInteractionCohort,
                                double[] rSquaredCohort,
                                double[] zscoreInteractionFlippedCohort)
                         throws BinaryInteractionFileException

Throws:

BinaryInteractionFileException

BinaryInteractionZscores

public BinaryInteractionZscores(int[] samplesInteractionCohort,
                                double[] zscoreSnpCohort,
                                double[] zscoreCovariateCohort,
                                double[] zscoreInteractionCohort,
                                double[] rSquaredCohort)
                         throws BinaryInteractionFileException

Throws:

BinaryInteractionFileException

BinaryInteractionZscores

public BinaryInteractionZscores(int samplesInteractionCohort,
                                double zscoreSnpCohort,
                                double zscoreCovariateCohort,
                                double zscoreInteractionCohort,
                                double rSquaredCohort,
                                double zscoreInteractionFlippedCohort)
                         throws BinaryInteractionFileException

Throws:

BinaryInteractionFileException

BinaryInteractionZscores

public BinaryInteractionZscores(int[] samplesInteractionCohort,
                                double[] zscoreSnpCohort,
                                double[] zscoreCovariateCohort,
                                double[] zscoreInteractionCohort,
                                double[] rSquaredCohort,
                                double zscoreSnpMeta,
                                double zscoreCovariateMeta,
                                double zscoreInteractionMeta)
                         throws BinaryInteractionFileException

Throws:

BinaryInteractionFileException

BinaryInteractionZscores

public BinaryInteractionZscores(double zscoreSnpMeta,
                                double zscoreCovariateMeta,
                                double zscoreInteractionMeta,
                                double zscoreInteractionFlippedMeta)

BinaryInteractionZscores

public BinaryInteractionZscores(double zscoreSnpMeta,
                                double zscoreCovariateMeta,
                                double zscoreInteractionMeta)

Method Detail

getSamplesInteractionCohort

public int[] getSamplesInteractionCohort()

getZscoreSnpCohort

public double[] getZscoreSnpCohort()

getZscoreCovariateCohort

public double[] getZscoreCovariateCohort()

getZscoreInteractionCohort

public double[] getZscoreInteractionCohort()

getrSquaredCohort

public double[] getrSquaredCohort()

getZscoreInteractionFlippedCohort

public double[] getZscoreInteractionFlippedCohort()

getZscoreSnpMeta

public double getZscoreSnpMeta()

getZscoreCovariateMeta

public double getZscoreCovariateMeta()

getZscoreInteractionMeta

public double getZscoreInteractionMeta()

getZscoreInteractionFlippedMeta

public double getZscoreInteractionFlippedMeta()

getCohortCount

public int getCohortCount()