Uses of Class
umcg.genetica.io.binInteraction.BinaryInteractionFileException

Packages that use BinaryInteractionFileException

Package	Description
umcg.genetica.io.binInteraction

Uses of BinaryInteractionFileException in umcg.genetica.io.binInteraction

Methods in umcg.genetica.io.binInteraction that throw BinaryInteractionFileException

Modifier and Type	Method and Description
void	BinaryInteractionFileCreator.addTestedInteraction(String variantName, String geneName, String[] covariateNames)
void	BinaryInteractionFileCreator.addTestedVariantGene(String variantName, String geneName)
boolean	BinaryInteractionFile.containsInteraction(String variantName, String geneName, String covariateName)
BinaryInteractionFile	BinaryInteractionFileCreator.create()
BinaryInteractionFile	BinaryInteractionFileConstructorBuilder.createBinaryInteractionFile()
void	BinaryInteractionFile.finalizeWriting()
BinaryInteractionGene	BinaryInteractionFile.getGene(int pointer)
BinaryInteractionGene	BinaryInteractionFile.getGene(String name)
BinaryInteractionVariant	BinaryInteractionFile.getVariant(int pointer)
BinaryInteractionVariant	BinaryInteractionFile.getVariant(String name)
static BinaryInteractionFile	BinaryInteractionFile.load(File interactionFile)
static BinaryInteractionFile	BinaryInteractionFile.load(File interactionFile, boolean readOnly)
protected BinaryInteractionZscores	BinaryInteractionFile.readInteractionResults(long interactionPointer)
BinaryInteractionZscores	BinaryInteractionFile.readInteractionResults(String variantName, String geneName, String covariateName)
BinaryInteractionQtlZscores	BinaryInteractionFile.readQtlResults(String variantName, String geneName)
BinaryInteractionQueryResult	BinaryInteractionFile.readVariantGeneCovariateResults(String variantName, String geneName, String covariateName)
Iterator<BinaryInteractionQueryResult>	BinaryInteractionFile.readVariantGeneResults(String variantName, String geneName)
void	BinaryInteractionFile.setInteractionResults(String variantName, String geneName, String covariateName, BinaryInteractionZscores zscores)
void	BinaryInteractionFile.setQtlResults(String variantName, String geneName, BinaryInteractionQtlZscores zscores)

Constructors in umcg.genetica.io.binInteraction that throw BinaryInteractionFileException

Constructor and Description
BinaryInteractionFile(File interactionFile, boolean readOnly, BinaryInteractionCohort[] cohorts, BinaryInteractionGene[] genes, BinaryInteractionVariant[] variants, String[] covariates, int[][] covariatesTested, long timeStamp, boolean allCovariants, boolean metaAnalysis, boolean normalQtlStored, boolean flippedZscoreStored, String fileDescription, long interactions, long startQtlBlock, long startInteractionBlock)
BinaryInteractionFileCreator(File file, BinaryInteractionVariantCreator[] variants, BinaryInteractionGeneCreator[] genes, BinaryInteractionCohort[] cohorts, String[] covariates, boolean allCovariants, boolean metaAnalysis, boolean normalQtlStored, boolean flippedZscoreStored)
BinaryInteractionQtlZscores(double[] zscores, int[] sampleCounts)
BinaryInteractionQtlZscores(double[] zscores, int[] sampleCounts, double metaZscore)
BinaryInteractionQtlZscores(double zscore, int sampleCounts)
BinaryInteractionZscores(int[] samplesInteractionCohort, double[] zscoreSnpCohort, double[] zscoreCovariateCohort, double[] zscoreInteractionCohort, double[] rSquaredCohort)
BinaryInteractionZscores(int[] samplesInteractionCohort, double[] zscoreSnpCohort, double[] zscoreCovariateCohort, double[] zscoreInteractionCohort, double[] rSquaredCohort, double[] zscoreInteractionFlippedCohort)
BinaryInteractionZscores(int[] samplesInteractionCohort, double[] zscoreSnpCohort, double[] zscoreCovariateCohort, double[] zscoreInteractionCohort, double[] rSquaredCohort, double[] zscoreInteractionFlippedCohort, double zscoreSnpMeta, double zscoreCovariateMeta, double zscoreInteractionMeta, double zscoreInteractionFlippedMeta)
BinaryInteractionZscores(int[] samplesInteractionCohort, double[] zscoreSnpCohort, double[] zscoreCovariateCohort, double[] zscoreInteractionCohort, double[] rSquaredCohort, double zscoreSnpMeta, double zscoreCovariateMeta, double zscoreInteractionMeta)
BinaryInteractionZscores(int samplesInteractionCohort, double zscoreSnpCohort, double zscoreCovariateCohort, double zscoreInteractionCohort, double rSquaredCohort, double zscoreInteractionFlippedCohort)