umcg.genetica.io.binInteraction.gene

Class BinaryInteractionGeneCreator

java.lang.Object

umcg.genetica.io.binInteraction.gene.BinaryInteractionGeneAbstract

umcg.genetica.io.binInteraction.gene.BinaryInteractionGeneCreator

All Implemented Interfaces:

BinaryInteractionGene

public class BinaryInteractionGeneCreator
extends BinaryInteractionGeneAbstract

Author:

Patrick Deelen

Constructor Summary

Constructors

Constructor and Description
BinaryInteractionGeneCreator(String name)
BinaryInteractionGeneCreator(String name, String chr, int start, int end)

Method Summary

Modifier and Type	Method and Description
void	addVariant(int variantPointer)
int	getIndexOfVariantPointer(int variantIndex)
int	getVariantCount()
int[]	getVariantPointers()
void	sortGenePointers()

Methods inherited from class umcg.genetica.io.binInteraction.gene.BinaryInteractionGeneAbstract

getChr, getEnd, getName, getStart

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BinaryInteractionGeneCreator

public BinaryInteractionGeneCreator(String name,
                                    String chr,
                                    int start,
                                    int end)

BinaryInteractionGeneCreator

public BinaryInteractionGeneCreator(String name)

Method Detail

getVariantPointers

public int[] getVariantPointers()

getVariantCount

public int getVariantCount()

addVariant

public void addVariant(int variantPointer)

sortGenePointers

public void sortGenePointers()

getIndexOfVariantPointer

public int getIndexOfVariantPointer(int variantIndex)