umcg.genetica.io.binInteraction.variant

Class BinaryInteractionVariantCreator

java.lang.Object

umcg.genetica.io.binInteraction.variant.BinaryInteractionVariantAbstract

umcg.genetica.io.binInteraction.variant.BinaryInteractionVariantCreator

All Implemented Interfaces:

BinaryInteractionVariant

public class BinaryInteractionVariantCreator
extends BinaryInteractionVariantAbstract

Author:

Patrick Deelen

Constructor Summary

Constructors

Constructor and Description
BinaryInteractionVariantCreator(String name, String chr, int pos, Allele refAllele, Allele altAllele)

Method Summary

Modifier and Type	Method and Description
void	addGene(int genePointer)
int	getGeneCount()
int[]	getGenePointers()
int	getIndexOfGenePointer(int geneIndex)
void	sortGenePointers()

Methods inherited from class umcg.genetica.io.binInteraction.variant.BinaryInteractionVariantAbstract

getAltAllele, getChr, getName, getPos, getRefAllele

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BinaryInteractionVariantCreator

public BinaryInteractionVariantCreator(String name,
                                       String chr,
                                       int pos,
                                       Allele refAllele,
                                       Allele altAllele)

Method Detail

getGeneCount

public int getGeneCount()

getGenePointers

public int[] getGenePointers()

addGene

public void addGene(int genePointer)

sortGenePointers

public void sortGenePointers()

getIndexOfGenePointer

public int getIndexOfGenePointer(int geneIndex)