umcg.genetica.io.geofiles

Class ParseSoftFile

java.lang.Object

umcg.genetica.io.geofiles.ParseSoftFile

public class ParseSoftFile
extends Object

Author:

Lude & Marc Jan

Field Summary

Fields

Modifier and Type	Field and Description
protected static String	ENCODING

Constructor Summary

Constructors

Constructor and Description
ParseSoftFile()

Method Summary

Modifier and Type	Method and Description
static HashMap<String,SoftfileAnnotation>	importAnnotationFromSOFTFile(String fileLocation)
static DoubleMatrixDataset<String,String>	importSOFTFile(String fileLocation, int numberOfSamples, int numberOfProbes)
static DoubleMatrixDataset<String,String>	importSOFTFileSelection(String fileLocation, int numberOfSamples, int numberOfProbes, int samplesPerDataset)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ENCODING

protected static final String ENCODING

See Also:

Constant Field Values

Constructor Detail

ParseSoftFile

public ParseSoftFile()

Method Detail

importAnnotationFromSOFTFile

public static HashMap<String,SoftfileAnnotation> importAnnotationFromSOFTFile(String fileLocation)
                                                                       throws Exception

Throws:

Exception

importSOFTFile

public static DoubleMatrixDataset<String,String> importSOFTFile(String fileLocation,
                                                                int numberOfSamples,
                                                                int numberOfProbes)
                                                         throws Exception

Throws:

Exception

importSOFTFileSelection

public static DoubleMatrixDataset<String,String> importSOFTFileSelection(String fileLocation,
                                                                         int numberOfSamples,
                                                                         int numberOfProbes,
                                                                         int samplesPerDataset)
                                                                  throws Exception

Throws:

Exception