umcg.genetica.io.geofiles

Class ParseTextTable

java.lang.Object

umcg.genetica.io.geofiles.ParseTextTable

public class ParseTextTable
extends Object

Author:

MarcJan

Field Summary

Fields

Modifier and Type	Field and Description
protected static String	ENCODING

Constructor Summary

Constructors

Constructor and Description
ParseTextTable()

Method Summary

Modifier and Type	Method and Description
static boolean	isNumeric(String str)
static DoubleMatrixDataset<String,String>	parseGeoTables(String fileInput, boolean debug) Geo text tables for HT12 v3 / v4 data

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ENCODING

protected static final String ENCODING

See Also:

Constant Field Values

Constructor Detail

ParseTextTable

public ParseTextTable()

Method Detail

parseGeoTables

public static DoubleMatrixDataset<String,String> parseGeoTables(String fileInput,
                                                                boolean debug)
                                                         throws IOException

Geo text tables for HT12 v3 / v4 data

Parameters:

fileInput -

Returns:

all data out of the TCGA files Methylated / un-methylated and beta-values

Throws:

IOException

isNumeric

public static boolean isNumeric(String str)