umcg.genetica.io.gmt

Class GMTFile

java.lang.Object

umcg.genetica.io.gmt.GMTFile

public class GMTFile
extends Object

Author:

harmjan $LastChangedDate: 2012-08-24 11:50:07 +0200 (Fri, 24 Aug 2012) $ $LastChangedRevision: 43 $

Constructor Summary

Constructors

Constructor and Description
GMTFile(String file)

Method Summary

Modifier and Type	Method and Description
Set<String>	getGenesForPathway(String pathway)
List<String>	getPathways()
Map<String,Set<String>>	getPathwayToGenes()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GMTFile

public GMTFile(String file)
        throws IOException

Throws:

IOException

Method Detail

getPathways

public List<String> getPathways()

getGenesForPathway

public Set<String> getGenesForPathway(String pathway)

getPathwayToGenes

public Map<String,Set<String>> getPathwayToGenes()