umcg.genetica.io.gwascatalog

Class GWASSNP

java.lang.Object

umcg.genetica.io.gwascatalog.GWASSNP

public class GWASSNP
extends Object

Author:

harmjan

Constructor Summary

Constructors

Constructor and Description
GWASSNP()

Method Summary

Modifier and Type	Method and Description
HashSet<GWASTrait>	getAssociatedTraits()
GWASTrait[]	getAssociatedTraitsArray()
byte	getChr()
int	getId()
String	getLocus()
String	getName()
int	getPosition()
HashSet<GWASPublication>	getPublishedIn()
Double	getPValueAssociatedWithTrait(GWASTrait t)
HashMap<GWASTrait,String>	getRiskAllele()
String	getRiskAllele(GWASTrait t)
void	setAssociatedTraits(HashSet<GWASTrait> associatedTraits)
void	setChr(byte chr)
void	setId(int id)
void	setLocus(String locus)
void	setName(String name)
void	setPosition(int position)
void	setPublishedIn(HashSet<GWASPublication> publishedIn)
void	setPValueAssociatedWithTrait(GWASTrait gwasTraitObj, Double pval)
void	setRiskAllele(HashMap<GWASTrait,String> riskAllele)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

GWASSNP

public GWASSNP()

Method Detail

getName

public String getName()

getRiskAllele

public String getRiskAllele(GWASTrait t)

getAssociatedTraits

public HashSet<GWASTrait> getAssociatedTraits()

Returns:

the associatedTraits

getAssociatedTraitsArray

public GWASTrait[] getAssociatedTraitsArray()

setAssociatedTraits

public void setAssociatedTraits(HashSet<GWASTrait> associatedTraits)

Parameters:

associatedTraits - the associatedTraits to set

getPublishedIn

public HashSet<GWASPublication> getPublishedIn()

Returns:

the publishedIn

setPublishedIn

public void setPublishedIn(HashSet<GWASPublication> publishedIn)

Parameters:

publishedIn - the publishedIn to set

getRiskAllele

public HashMap<GWASTrait,String> getRiskAllele()

Returns:

the riskAllele

setRiskAllele

public void setRiskAllele(HashMap<GWASTrait,String> riskAllele)

Parameters:

riskAllele - the riskAllele to set

getId

public int getId()

Returns:

the id

setId

public void setId(int id)

Parameters:

id - the id to set

setName

public void setName(String name)

Parameters:

name - the name to set

getChr

public byte getChr()

Returns:

the chr

setChr

public void setChr(byte chr)

Parameters:

chr - the chr to set

getPosition

public int getPosition()

Returns:

the position

setPosition

public void setPosition(int position)

Parameters:

position - the position to set

getLocus

public String getLocus()

Returns:

the locus

setLocus

public void setLocus(String locus)

Parameters:

locus - the locus to set

setPValueAssociatedWithTrait

public void setPValueAssociatedWithTrait(GWASTrait gwasTraitObj,
                                         Double pval)

getPValueAssociatedWithTrait

public Double getPValueAssociatedWithTrait(GWASTrait t)

toString

public String toString()

Overrides:

toString in class Object