Uses of Class
umcg.genetica.io.gwascatalog.GWASSNP

Packages that use GWASSNP

Package	Description
umcg.genetica.io.gwascatalog

Uses of GWASSNP in umcg.genetica.io.gwascatalog

Methods in umcg.genetica.io.gwascatalog that return GWASSNP

Modifier and Type	Method and Description
GWASSNP[]	GWASTrait.getSNPs()
GWASSNP[]	GWASTrait.getSNPs(double pThreshold)
GWASSNP[]	GWASCatalog.getSnpsArray()
GWASSNP[]	GWASCatalog.getSNPsForTraitContainingKey(String key)
GWASSNP[]	GWASTrait.getTopAssociations()

Methods in umcg.genetica.io.gwascatalog that return types with arguments of type GWASSNP

Modifier and Type	Method and Description
HashSet<GWASSNP>	GWASCatalog.getSnps()
HashMap<String,GWASSNP>	GWASCatalog.getSnpToObj()

Methods in umcg.genetica.io.gwascatalog with parameters of type GWASSNP

Modifier and Type	Method and Description
void	GWASTrait.addTopSNP(GWASSNP gwasTopSNPObj)
Double	GWASPublication.getPValueAssociatedWithTrait(GWASSNP gwasSNPObj, GWASTrait traitObj)
boolean	GWASTrait.isTopAssociation(GWASSNP snp)
void	GWASPublication.setPValueAssociatedWithTrait(GWASSNP gwasSNPObj, GWASTrait traitObj, Double pval)

Method parameters in umcg.genetica.io.gwascatalog with type arguments of type GWASSNP

Modifier and Type	Method and Description
void	GWASCatalog.setSnps(HashSet<GWASSNP> snps)
void	GWASCatalog.setSnpToObj(HashMap<String,GWASSNP> snpToObj)