Uses of Class
umcg.genetica.io.gwascatalog.GWASTrait

Packages that use GWASTrait

Package	Description
umcg.genetica.io.gwascatalog

Uses of GWASTrait in umcg.genetica.io.gwascatalog

Methods in umcg.genetica.io.gwascatalog that return GWASTrait

Modifier and Type	Method and Description
GWASTrait[]	GWASSNP.getAssociatedTraitsArray()
GWASTrait[]	GWASCatalog.getTraits()
GWASTrait[]	GWASCatalog.getTraitsForCertainKey(String key)

Methods in umcg.genetica.io.gwascatalog that return types with arguments of type GWASTrait

Modifier and Type	Method and Description
HashSet<GWASTrait>	GWASSNP.getAssociatedTraits()
HashSet<GWASTrait>	GWASCatalog.getFullTraitsForCertainSnps(String key)
HashMap<GWASTrait,String>	GWASSNP.getRiskAllele()
HashMap<String,GWASTrait>	GWASCatalog.getTraitToObj()

Methods in umcg.genetica.io.gwascatalog with parameters of type GWASTrait

Modifier and Type	Method and Description
Double	GWASPublication.getPValueAssociatedWithTrait(GWASSNP gwasSNPObj, GWASTrait traitObj)
Double	GWASSNP.getPValueAssociatedWithTrait(GWASTrait t)
String	GWASSNP.getRiskAllele(GWASTrait t)
void	GWASPublication.setPValueAssociatedWithTrait(GWASSNP gwasSNPObj, GWASTrait traitObj, Double pval)
void	GWASSNP.setPValueAssociatedWithTrait(GWASTrait gwasTraitObj, Double pval)

Method parameters in umcg.genetica.io.gwascatalog with type arguments of type GWASTrait

Modifier and Type	Method and Description
void	GWASSNP.setAssociatedTraits(HashSet<GWASTrait> associatedTraits)
void	GWASSNP.setRiskAllele(HashMap<GWASTrait,String> riskAllele)
void	GWASCatalog.setTraits(HashSet<GWASTrait> traits)
void	GWASCatalog.setTraitToObj(HashMap<String,GWASTrait> traitToObj)