public class PileupFile extends Object implements Iterable<PileupEntry>
| Constructor and Description |
|---|
PileupFile(File pileupFile,
int minimumBaseQuality) |
PileupFile(String pileupFilePath,
int minimumBaseQuality) |
| Modifier and Type | Method and Description |
|---|---|
String |
getAbsolutePath() |
Iterator<PileupEntry> |
iterator() |
static PileupEntry |
parsePileupLine(String line,
int minimumBaseQuality) |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, waitforEach, spliteratorpublic PileupFile(String pileupFilePath, int minimumBaseQuality) throws FileNotFoundException, IOException
FileNotFoundExceptionIOExceptionpublic PileupFile(File pileupFile, int minimumBaseQuality) throws FileNotFoundException, IOException
FileNotFoundExceptionIOExceptionpublic static PileupEntry parsePileupLine(String line, int minimumBaseQuality) throws PileupParseException
PileupParseExceptionpublic Iterator<PileupEntry> iterator()
iterator in interface Iterable<PileupEntry>public String getAbsolutePath()
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