Uses of Class
umcg.genetica.io.pileup.PileupFile

Packages that use PileupFile

Package	Description
umcg.genetica.io.pileup

Uses of PileupFile in umcg.genetica.io.pileup

Methods in umcg.genetica.io.pileup with parameters of type PileupFile

Modifier and Type	Method and Description
static void	PileupToVcf.convertPileupToVcf(PileupFile pileupFile, String sample, File outputVcf, RandomAccessGenotypeData referenceGenotypes, int minBaseQuality) Parse pileup file and create vcf files with only SNPs that are in referenceGenotype data.
static void	PileupToVcf.convertPileupToVcf2(PileupFile pileupFile, String sample, File outputVcf, RandomAccessGenotypeData referenceGenotypes, int minBaseQuality) Parse pileup file and create vcf files with only SNPs that are in referenceGenotype data.