umcg.genetica.io.text.converters

Class NetworkConverter

java.lang.Object

umcg.genetica.io.text.converters.NetworkConverter

public class NetworkConverter
extends Object

Author:

juha

Method Summary

Modifier and Type	Method and Description
static void	convertGMTFileToPlainTextBinaryNetwork(String infile, String outfile, boolean hasIds, boolean isActuallyGMT)
static void	convertPlainTextDoubleMatrixToPlainTextEdgeList(String matrixfile, String outfile, String infileDelimiter, String outfileDelimiter)
static void	writeGMTFileBasedOnGeneSetFileAndMappingFileRemovingDuplicateGeneSets(String genesetfile, String mappingfile, String mappingdelimiter, String gmtfile)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

convertPlainTextDoubleMatrixToPlainTextEdgeList

public static void convertPlainTextDoubleMatrixToPlainTextEdgeList(String matrixfile,
                                                                   String outfile,
                                                                   String infileDelimiter,
                                                                   String outfileDelimiter)
                                                            throws IOException

Throws:

IOException

writeGMTFileBasedOnGeneSetFileAndMappingFileRemovingDuplicateGeneSets

public static void writeGMTFileBasedOnGeneSetFileAndMappingFileRemovingDuplicateGeneSets(String genesetfile,
                                                                                         String mappingfile,
                                                                                         String mappingdelimiter,
                                                                                         String gmtfile)
                                                                                  throws IOException

Throws:

IOException

convertGMTFileToPlainTextBinaryNetwork

public static void convertGMTFileToPlainTextBinaryNetwork(String infile,
                                                          String outfile,
                                                          boolean hasIds,
                                                          boolean isActuallyGMT)
                                                   throws IOException

Throws:

IOException