umcg.genetica.io.trityper

Class ProbeAnnotation

java.lang.Object

umcg.genetica.io.trityper.ProbeAnnotation

public final class ProbeAnnotation
extends Object

Author:

harm-jan

Constructor Summary

Constructors

Constructor and Description
ProbeAnnotation()
ProbeAnnotation(String loc)

Method Summary

Modifier and Type	Method and Description
short[]	getChr()
int[]	getChrEnd()
int[]	getChrStart()
String[]	getProbeAnnotation()
String[]	getProbes()
HashMap<String,Integer>	getProbeToProbeId()
void	load(String loc)
void	setChr(short[] chr)
void	setChrEnd(int[] chrEnd)
void	setChrStart(int[] chrStart)
void	setProbeAnnotation(String[] probeAnnotation)
void	setProbes(String[] probes)
void	setProbeToProbeId(HashMap<String,Integer> probeToProbeId)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ProbeAnnotation

public ProbeAnnotation()

ProbeAnnotation

public ProbeAnnotation(String loc)
                throws IOException

Throws:

IOException

Method Detail

load

public void load(String loc)
          throws IOException

Throws:

IOException

getProbes

public String[] getProbes()

Returns:

the probes

getChrStart

public int[] getChrStart()

Returns:

the chrStart

getChrEnd

public int[] getChrEnd()

Returns:

the chrEnd

getChr

public short[] getChr()

Returns:

the chr

getProbeAnnotation

public String[] getProbeAnnotation()

Returns:

the probeAnnotation

getProbeToProbeId

public HashMap<String,Integer> getProbeToProbeId()

Returns:

the probeToProbeId

setProbes

public void setProbes(String[] probes)

Parameters:

probes - the probes to set

setChrStart

public void setChrStart(int[] chrStart)

Parameters:

chrStart - the chrStart to set

setChrEnd

public void setChrEnd(int[] chrEnd)

Parameters:

chrEnd - the chrEnd to set

setChr

public void setChr(short[] chr)

Parameters:

chr - the chr to set

setProbeAnnotation

public void setProbeAnnotation(String[] probeAnnotation)

Parameters:

probeAnnotation - the probeAnnotation to set

setProbeToProbeId

public void setProbeToProbeId(HashMap<String,Integer> probeToProbeId)

Parameters:

probeToProbeId - the probeToProbeId to set