umcg.genetica.io.trityper

Class TriTyperGeneticalGenomicsDatasetSettings

java.lang.Object

umcg.genetica.io.trityper.TriTyperGeneticalGenomicsDatasetSettings

public class TriTyperGeneticalGenomicsDatasetSettings
extends Object

Author:

harmjan

Field Summary

Fields

Modifier and Type	Field and Description
boolean	cisAnalysis
boolean	confineProbesToProbesMappingToAnyChromosome
Integer	confineProbesToProbesThatMapToChromosome
String	covariateFile
String	expressionLocation
String	expressionplatform
String	genotypeLocation
String	genotypeToExpressionCoupling
boolean	logtransform
String	name
String	probeannotation
boolean	quantilenormalize
boolean	transAnalysis
gnu.trove.set.hash.THashSet<String>	tsProbesConfine

Constructor Summary

Constructors

Constructor and Description
TriTyperGeneticalGenomicsDatasetSettings()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

name

public String name

genotypeLocation

public String genotypeLocation

expressionLocation

public String expressionLocation

genotypeToExpressionCoupling

public String genotypeToExpressionCoupling

logtransform

public boolean logtransform

quantilenormalize

public boolean quantilenormalize

tsProbesConfine

public gnu.trove.set.hash.THashSet<String> tsProbesConfine

confineProbesToProbesMappingToAnyChromosome

public boolean confineProbesToProbesMappingToAnyChromosome

confineProbesToProbesThatMapToChromosome

public Integer confineProbesToProbesThatMapToChromosome

expressionplatform

public String expressionplatform

probeannotation

public String probeannotation

cisAnalysis

public boolean cisAnalysis

transAnalysis

public boolean transAnalysis

covariateFile

public String covariateFile

Constructor Detail

TriTyperGeneticalGenomicsDatasetSettings

public TriTyperGeneticalGenomicsDatasetSettings()